Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:27:28.818 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:27:28 GMT 2026] MarkDuplicates --INPUT 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:27:28 GMT 2026] Executing as ?@nf-0d54cf87b910b65d5bee228846ed05c0-9cec5-qqlwl on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:27:28 MarkDuplicates Start of doWork freeMemory: 105827816; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:27:28 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:27:28 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:27:32 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,390,334
INFO 2026-06-08 08:27:32 MarkDuplicates Tracking 3122 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:27:34 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:6,186,728
INFO 2026-06-08 08:27:34 MarkDuplicates Tracking 7502 as yet unmatched pairs. 1565 records in RAM.
INFO 2026-06-08 08:27:36 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:8,358,834
INFO 2026-06-08 08:27:36 MarkDuplicates Tracking 9024 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:10,119,531
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 12007 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:12,022,877
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 14715 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:15,933,547
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 17382 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 08:27:44 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:17,580,600
INFO 2026-06-08 08:27:44 MarkDuplicates Tracking 20263 as yet unmatched pairs. 246 records in RAM.
INFO 2026-06-08 08:27:46 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:20,776,655
INFO 2026-06-08 08:27:46 MarkDuplicates Tracking 23072 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:27:47 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:22,091,445
INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 26099 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:24,648,868
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 28754 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 08:27:50 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:26,762,976
INFO 2026-06-08 08:27:50 MarkDuplicates Tracking 31459 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:27:52 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:28,480,532
INFO 2026-06-08 08:27:52 MarkDuplicates Tracking 34350 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:31,736,335
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 37190 as yet unmatched pairs. 28 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:34,987,065
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 40037 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:27:58 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:36,304,506
INFO 2026-06-08 08:27:58 MarkDuplicates Tracking 42955 as yet unmatched pairs. 78 records in RAM.
INFO 2026-06-08 08:28:00 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:39,437,819
INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 45832 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 08:28:02 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:42,278,576
INFO 2026-06-08 08:28:02 MarkDuplicates Tracking 48527 as yet unmatched pairs. 223 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:43,609,456
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 51786 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:28:05 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:45,568,076
INFO 2026-06-08 08:28:05 MarkDuplicates Tracking 54479 as yet unmatched pairs. 60 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:51,409,583
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 57224 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:28:10 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:58,505,999
INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 59804 as yet unmatched pairs. 72 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 3s. Last read position: chr1:64,850,855
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 62680 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:28:16 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:77,966,939
INFO 2026-06-08 08:28:16 MarkDuplicates Tracking 65361 as yet unmatched pairs. 254 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:91,719,966
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 68148 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:99,877,678
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 70174 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:28:22 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:103,687,464
INFO 2026-06-08 08:28:22 MarkDuplicates Tracking 71795 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:108,699,886
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 72364 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:111,456,641
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 75147 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:114,427,261
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 77739 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:28:29 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,517
INFO 2026-06-08 08:28:29 MarkDuplicates Tracking 80810 as yet unmatched pairs. 466 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:120,459,426
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 82701 as yet unmatched pairs. 88 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:146,066,313
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 84518 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 08:28:35 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:147,620,259
INFO 2026-06-08 08:28:35 MarkDuplicates Tracking 85404 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:149,075,757
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 86679 as yet unmatched pairs. 321 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,471,754
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 88270 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:151,404,785
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 91138 as yet unmatched pairs. 173 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:153,952,153
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 93637 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:154,951,339
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 96183 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 08:28:45 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:155,659,806
INFO 2026-06-08 08:28:45 MarkDuplicates Tracking 98936 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,240
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 101807 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:28:50 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:160,217,700
INFO 2026-06-08 08:28:50 MarkDuplicates Tracking 104665 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:162,719,043
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 107319 as yet unmatched pairs. 59 records in RAM.
INFO 2026-06-08 08:28:53 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:171,540,297
INFO 2026-06-08 08:28:53 MarkDuplicates Tracking 110171 as yet unmatched pairs. 250 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:179,050,279
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 112436 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:186,088,744
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 114985 as yet unmatched pairs. 45 records in RAM.
INFO 2026-06-08 08:28:58 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:186,361,817
INFO 2026-06-08 08:28:58 MarkDuplicates Tracking 117788 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:202,310,237
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 119988 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 08:29:03 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:204,112,929
INFO 2026-06-08 08:29:03 MarkDuplicates Tracking 122586 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:29:05 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:208,217,230
INFO 2026-06-08 08:29:05 MarkDuplicates Tracking 125203 as yet unmatched pairs. 74 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:220,528,751
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 127618 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:29:08 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,384
INFO 2026-06-08 08:29:08 MarkDuplicates Tracking 130470 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:29:10 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:231,336,880
INFO 2026-06-08 08:29:10 MarkDuplicates Tracking 133173 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:29:12 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:235,342,668
INFO 2026-06-08 08:29:12 MarkDuplicates Tracking 136255 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:244,859,306
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 138997 as yet unmatched pairs. 256 records in RAM.
INFO 2026-06-08 08:29:17 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr2:1,687,624
INFO 2026-06-08 08:29:17 MarkDuplicates Tracking 142423 as yet unmatched pairs. 140718 records in RAM.
INFO 2026-06-08 08:29:19 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:10,789,785
INFO 2026-06-08 08:29:19 MarkDuplicates Tracking 144422 as yet unmatched pairs. 142679 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:24,310,500
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 147189 as yet unmatched pairs. 145394 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr2:27,055,102
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 149721 as yet unmatched pairs. 147908 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:28,869,584
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 152590 as yet unmatched pairs. 150750 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 227973 as yet unmatched pairs. 148688 records in RAM.
INFO 2026-06-08 08:29:29 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:29 MarkDuplicates Tracking 489958 as yet unmatched pairs. 136465 records in RAM.
INFO 2026-06-08 08:29:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:29:31 MarkDuplicates Tracking 1116287 as yet unmatched pairs. 106865 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 1365547 as yet unmatched pairs. 94897 records in RAM.
INFO 2026-06-08 08:29:34 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:29:34 MarkDuplicates Tracking 1370136 as yet unmatched pairs. 94693 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:36,851,039
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 1457981 as yet unmatched pairs. 89990 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:42,329,991
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 1455230 as yet unmatched pairs. 87210 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:47,161,723
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 1452386 as yet unmatched pairs. 84326 records in RAM.
INFO 2026-06-08 08:29:42 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:54,668,445
INFO 2026-06-08 08:29:42 MarkDuplicates Tracking 1449660 as yet unmatched pairs. 81570 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:61,256,391
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 1447181 as yet unmatched pairs. 79043 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 2s. Last read position: chr2:69,123,051
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 1444607 as yet unmatched pairs. 76403 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:73,251,351
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 1441959 as yet unmatched pairs. 73728 records in RAM.
INFO 2026-06-08 08:29:51 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:74,527,288
INFO 2026-06-08 08:29:51 MarkDuplicates Tracking 1439197 as yet unmatched pairs. 70946 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:86,563,319
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 1436410 as yet unmatched pairs. 68132 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:95,929,116
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 1435237 as yet unmatched pairs. 66935 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:96,972,121
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 1432426 as yet unmatched pairs. 64096 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:97,585,021
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 1431125 as yet unmatched pairs. 62774 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:101,874,172
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 1428065 as yet unmatched pairs. 59691 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:108,763,886
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 1426502 as yet unmatched pairs. 58118 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,204
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 1424781 as yet unmatched pairs. 56385 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:112,390,996
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 1423672 as yet unmatched pairs. 55248 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:120,346,416
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 1421439 as yet unmatched pairs. 52973 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:130,914,360
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 1419056 as yet unmatched pairs. 50536 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:147,939,216
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 1416797 as yet unmatched pairs. 48211 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:159,227,823
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 1414279 as yet unmatched pairs. 45643 records in RAM.
INFO 2026-06-08 08:30:12 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:169,914,108
INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 1411970 as yet unmatched pairs. 43286 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:173,909,668
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 1409315 as yet unmatched pairs. 40592 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:178,574,092
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 1407032 as yet unmatched pairs. 38275 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:188,991,047
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 1404645 as yet unmatched pairs. 35844 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:196,764,560
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 1401826 as yet unmatched pairs. 32993 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:201,718,166
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 1399190 as yet unmatched pairs. 30320 records in RAM.
INFO 2026-06-08 08:30:24 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:203,440,841
INFO 2026-06-08 08:30:24 MarkDuplicates Tracking 1396866 as yet unmatched pairs. 27964 records in RAM.
INFO 2026-06-08 08:30:26 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:209,730,314
INFO 2026-06-08 08:30:26 MarkDuplicates Tracking 1394157 as yet unmatched pairs. 25219 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,637
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 1393272 as yet unmatched pairs. 24301 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,559
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 1389839 as yet unmatched pairs. 20852 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:216,138,094
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 1386991 as yet unmatched pairs. 17989 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:218,696,490
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 1383734 as yet unmatched pairs. 14715 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:222,919,105
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 1380777 as yet unmatched pairs. 11658 records in RAM.
INFO 2026-06-08 08:30:36 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:231,276,709
INFO 2026-06-08 08:30:36 MarkDuplicates Tracking 1378130 as yet unmatched pairs. 8982 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:233,256,184
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 1375307 as yet unmatched pairs. 6131 records in RAM.
INFO 2026-06-08 08:30:39 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:240,014,771
INFO 2026-06-08 08:30:39 MarkDuplicates Tracking 1372459 as yet unmatched pairs. 3237 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:241,670,736
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 1369473 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 3s. Last read position: chr3:9,911,274
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 1366827 as yet unmatched pairs. 78545 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr3:12,839,465
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 1365466 as yet unmatched pairs. 77151 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr3:18,415,202
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 1361236 as yet unmatched pairs. 72897 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr3:36,855,258
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 1358630 as yet unmatched pairs. 70251 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:38,252,355
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 1356014 as yet unmatched pairs. 67577 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,268
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 1355469 as yet unmatched pairs. 67020 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:42,639,160
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 1351173 as yet unmatched pairs. 62698 records in RAM.
INFO 2026-06-08 08:30:57 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:46,994,396
INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 1348227 as yet unmatched pairs. 59717 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:47,772,825
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 1345881 as yet unmatched pairs. 57348 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:48,694,932
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 1343628 as yet unmatched pairs. 55073 records in RAM.
INFO 2026-06-08 08:31:02 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,112,598
INFO 2026-06-08 08:31:02 MarkDuplicates Tracking 1339624 as yet unmatched pairs. 51049 records in RAM.
INFO 2026-06-08 08:31:04 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:50,115,575
INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 1337049 as yet unmatched pairs. 48451 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:52,292,263
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 1334233 as yet unmatched pairs. 45614 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:53,726,916
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 1331158 as yet unmatched pairs. 42514 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:58,097,815
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 1329029 as yet unmatched pairs. 40353 records in RAM.
INFO 2026-06-08 08:31:11 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:58,170,664
INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 1326216 as yet unmatched pairs. 37515 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:70,988,007
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 1323115 as yet unmatched pairs. 34346 records in RAM.
INFO 2026-06-08 08:31:14 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:100,744,921
INFO 2026-06-08 08:31:14 MarkDuplicates Tracking 1320635 as yet unmatched pairs. 31799 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:113,453,558
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 1317944 as yet unmatched pairs. 29075 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:121,718,381
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 1315327 as yet unmatched pairs. 26417 records in RAM.
INFO 2026-06-08 08:31:19 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:127,014,581
INFO 2026-06-08 08:31:19 MarkDuplicates Tracking 1312647 as yet unmatched pairs. 23712 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:131,498,263
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 1309832 as yet unmatched pairs. 20862 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:141,571,435
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1307152 as yet unmatched pairs. 18139 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:149,657,232
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1304634 as yet unmatched pairs. 15591 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:167,695,705
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 1302249 as yet unmatched pairs. 13182 records in RAM.
INFO 2026-06-08 08:31:28 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:180,609,959
INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 1299781 as yet unmatched pairs. 10672 records in RAM.
INFO 2026-06-08 08:31:30 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:184,323,222
INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 1296974 as yet unmatched pairs. 7836 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:188,524,772
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 1294635 as yet unmatched pairs. 5468 records in RAM.
INFO 2026-06-08 08:31:33 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,830
INFO 2026-06-08 08:31:33 MarkDuplicates Tracking 1292489 as yet unmatched pairs. 3296 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:196,828,354
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1290268 as yet unmatched pairs. 1055 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr4:1,025,078
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1287791 as yet unmatched pairs. 49894 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr4:2,720,010
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 1284359 as yet unmatched pairs. 46442 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:7,793,803
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1281450 as yet unmatched pairs. 43511 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:13,603,286
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 1278923 as yet unmatched pairs. 40953 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:26,739,881
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 1276410 as yet unmatched pairs. 38386 records in RAM.
INFO 2026-06-08 08:31:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:41,013,704
INFO 2026-06-08 08:31:45 MarkDuplicates Tracking 1273807 as yet unmatched pairs. 35752 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:56,009,778
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 1271170 as yet unmatched pairs. 33059 records in RAM.
INFO 2026-06-08 08:31:48 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:69,999,675
INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 1272203 as yet unmatched pairs. 34065 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:70,768,581
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1266415 as yet unmatched pairs. 28265 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:77,048,336
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 1264021 as yet unmatched pairs. 25841 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr4:84,787,621
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 1261231 as yet unmatched pairs. 23036 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr4:95,157,805
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 1258769 as yet unmatched pairs. 20523 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:108,622,569
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 1257768 as yet unmatched pairs. 19484 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:122,229,979
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 1254124 as yet unmatched pairs. 15792 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:140,152,916
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 1251781 as yet unmatched pairs. 13428 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:151,100,577
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 1251529 as yet unmatched pairs. 13151 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:155,775,033
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 1246924 as yet unmatched pairs. 8502 records in RAM.
INFO 2026-06-08 08:32:06 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:170,087,093
INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 1244280 as yet unmatched pairs. 5819 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:186,606,108
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 1242044 as yet unmatched pairs. 3547 records in RAM.
INFO 2026-06-08 08:32:09 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:186,708,862
INFO 2026-06-08 08:32:09 MarkDuplicates Tracking 1240083 as yet unmatched pairs. 1561 records in RAM.
INFO 2026-06-08 08:32:12 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:1,255,355
INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 1236481 as yet unmatched pairs. 80454 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr5:10,748,215
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1232868 as yet unmatched pairs. 76810 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:16,710,978
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 1230021 as yet unmatched pairs. 73934 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:35,065,221
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 1227658 as yet unmatched pairs. 71538 records in RAM.
INFO 2026-06-08 08:32:19 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr5:40,834,237
INFO 2026-06-08 08:32:19 MarkDuplicates Tracking 1226833 as yet unmatched pairs. 70678 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:58,457,080
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 1222555 as yet unmatched pairs. 66373 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:68,226,644
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1220074 as yet unmatched pairs. 63849 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:71,109,995
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 1218621 as yet unmatched pairs. 62370 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:75,674,474
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 1216144 as yet unmatched pairs. 59863 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,449
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1215480 as yet unmatched pairs. 59157 records in RAM.
INFO 2026-06-08 08:32:29 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:83,538,603
INFO 2026-06-08 08:32:29 MarkDuplicates Tracking 1212704 as yet unmatched pairs. 56358 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:87,268,959
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 1209069 as yet unmatched pairs. 52701 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:97,022,356
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 1206258 as yet unmatched pairs. 49868 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:113,013,362
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 1203922 as yet unmatched pairs. 47481 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:131,706,501
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 1201406 as yet unmatched pairs. 44922 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,858
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 1198697 as yet unmatched pairs. 42183 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,475
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 1196049 as yet unmatched pairs. 39510 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:140,438,517
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 1193494 as yet unmatched pairs. 36756 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:141,096,192
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 1190634 as yet unmatched pairs. 33868 records in RAM.
INFO 2026-06-08 08:32:44 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:141,224,862
INFO 2026-06-08 08:32:44 MarkDuplicates Tracking 1188812 as yet unmatched pairs. 32040 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,679,798
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 1185653 as yet unmatched pairs. 28865 records in RAM.
INFO 2026-06-08 08:32:47 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,001,027
INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 1183089 as yet unmatched pairs. 26264 records in RAM.
INFO 2026-06-08 08:32:49 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,579
INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 1181940 as yet unmatched pairs. 25111 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:151,103,585
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 1177091 as yet unmatched pairs. 20233 records in RAM.
INFO 2026-06-08 08:32:53 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:160,603,970
INFO 2026-06-08 08:32:53 MarkDuplicates Tracking 1174333 as yet unmatched pairs. 17440 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:170,809,679
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1176320 as yet unmatched pairs. 19399 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,741
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1173150 as yet unmatched pairs. 16211 records in RAM.
INFO 2026-06-08 08:32:58 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr5:173,151,562
INFO 2026-06-08 08:32:58 MarkDuplicates Tracking 1167152 as yet unmatched pairs. 10192 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:177,512,513
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1164353 as yet unmatched pairs. 7379 records in RAM.
INFO 2026-06-08 08:33:02 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:179,723,725
INFO 2026-06-08 08:33:02 MarkDuplicates Tracking 1162137 as yet unmatched pairs. 5137 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:181,236,969
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1160890 as yet unmatched pairs. 3868 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:3,224,788
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 1155905 as yet unmatched pairs. 96073 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:7,563,765
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 1153466 as yet unmatched pairs. 93612 records in RAM.
INFO 2026-06-08 08:33:09 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:7,582,749
INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 1150856 as yet unmatched pairs. 90987 records in RAM.
INFO 2026-06-08 08:33:11 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:10,749,675
INFO 2026-06-08 08:33:11 MarkDuplicates Tracking 1147685 as yet unmatched pairs. 87782 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:18,465,105
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 1144939 as yet unmatched pairs. 85006 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,760
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1141978 as yet unmatched pairs. 81993 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,053
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 1139073 as yet unmatched pairs. 79070 records in RAM.
INFO 2026-06-08 08:33:17 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:30,606,786
INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 1136449 as yet unmatched pairs. 76412 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,530,775
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1134360 as yet unmatched pairs. 74307 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:31,647,662
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1131107 as yet unmatched pairs. 71042 records in RAM.
INFO 2026-06-08 08:33:23 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,961,321
INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 1128192 as yet unmatched pairs. 68105 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:32,977,914
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1125648 as yet unmatched pairs. 65548 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:33,414,040
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 1123129 as yet unmatched pairs. 63015 records in RAM.
INFO 2026-06-08 08:33:27 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:35,468,959
INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 1120639 as yet unmatched pairs. 60495 records in RAM.
INFO 2026-06-08 08:33:29 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr6:41,094,457
INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 1117144 as yet unmatched pairs. 56967 records in RAM.
INFO 2026-06-08 08:33:31 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:43,132,567
INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 1114620 as yet unmatched pairs. 54415 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:44,230,418
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1111417 as yet unmatched pairs. 51203 records in RAM.
INFO 2026-06-08 08:33:34 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:52,995,770
INFO 2026-06-08 08:33:34 MarkDuplicates Tracking 1109213 as yet unmatched pairs. 48922 records in RAM.
INFO 2026-06-08 08:33:36 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:63,709,175
INFO 2026-06-08 08:33:36 MarkDuplicates Tracking 1106458 as yet unmatched pairs. 46143 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:75,255,936
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1104069 as yet unmatched pairs. 43719 records in RAM.
INFO 2026-06-08 08:33:39 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr6:83,110,225
INFO 2026-06-08 08:33:39 MarkDuplicates Tracking 1101707 as yet unmatched pairs. 41311 records in RAM.
INFO 2026-06-08 08:33:42 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr6:89,083,785
INFO 2026-06-08 08:33:42 MarkDuplicates Tracking 1099811 as yet unmatched pairs. 39391 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr6:98,926,623
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 1096494 as yet unmatched pairs. 36046 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,710
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1094833 as yet unmatched pairs. 34365 records in RAM.
INFO 2026-06-08 08:33:48 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:111,367,441
INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 1091344 as yet unmatched pairs. 30834 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr6:119,024,762
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1088650 as yet unmatched pairs. 28108 records in RAM.
INFO 2026-06-08 08:33:51 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr6:130,955,170
INFO 2026-06-08 08:33:51 MarkDuplicates Tracking 1086187 as yet unmatched pairs. 25610 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:135,181,512
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1086382 as yet unmatched pairs. 25779 records in RAM.
INFO 2026-06-08 08:33:54 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:135,190,318
INFO 2026-06-08 08:33:54 MarkDuplicates Tracking 1083127 as yet unmatched pairs. 22522 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:135,194,367
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 1080998 as yet unmatched pairs. 20367 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:135,195,874
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 1083296 as yet unmatched pairs. 22658 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:135,200,109
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1075404 as yet unmatched pairs. 14751 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr6:138,944,533
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1070158 as yet unmatched pairs. 9480 records in RAM.
INFO 2026-06-08 08:34:03 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:151,373,489
INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 1067420 as yet unmatched pairs. 6703 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr6:159,232,639
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 1064860 as yet unmatched pairs. 4114 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr6:167,952,155
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 1062161 as yet unmatched pairs. 1385 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr7:1,502,948
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 1058900 as yet unmatched pairs. 101171 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:5,332,935
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 1055833 as yet unmatched pairs. 98066 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,278
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 1054411 as yet unmatched pairs. 96629 records in RAM.
INFO 2026-06-08 08:34:14 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:8,086,400
INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 1049929 as yet unmatched pairs. 92114 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr7:22,773,707
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1047550 as yet unmatched pairs. 89706 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:32,870,766
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 1044990 as yet unmatched pairs. 87111 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:43,987,828
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 1042336 as yet unmatched pairs. 84421 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:44,760,483
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 1039771 as yet unmatched pairs. 81842 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:48,272,376
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 1036864 as yet unmatched pairs. 78918 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:55,965,780
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 1034188 as yet unmatched pairs. 76226 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:70,763,068
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 1032115 as yet unmatched pairs. 74100 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:72,969,721
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 1029935 as yet unmatched pairs. 71915 records in RAM.
INFO 2026-06-08 08:34:27 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,612
INFO 2026-06-08 08:34:27 MarkDuplicates Tracking 1029402 as yet unmatched pairs. 71373 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:74,735,482
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 1026880 as yet unmatched pairs. 68821 records in RAM.
INFO 2026-06-08 08:34:30 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:75,201,286
INFO 2026-06-08 08:34:30 MarkDuplicates Tracking 1027184 as yet unmatched pairs. 69118 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:75,497,914
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 1023898 as yet unmatched pairs. 65828 records in RAM.
INFO 2026-06-08 08:34:33 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:77,056,599
INFO 2026-06-08 08:34:33 MarkDuplicates Tracking 1021718 as yet unmatched pairs. 63635 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:90,413,309
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 1019624 as yet unmatched pairs. 61519 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:92,070,183
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 1017262 as yet unmatched pairs. 59140 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr7:93,131,595
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 1014486 as yet unmatched pairs. 56344 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:98,192,201
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 1011804 as yet unmatched pairs. 53645 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:99,458,284
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 1009033 as yet unmatched pairs. 50863 records in RAM.
INFO 2026-06-08 08:34:43 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,064,820
INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 1006532 as yet unmatched pairs. 48342 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,358,700
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 1004227 as yet unmatched pairs. 46028 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,885,257
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 1000534 as yet unmatched pairs. 42324 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:102,354,766
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 997892 as yet unmatched pairs. 39659 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:102,593,923
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 997073 as yet unmatched pairs. 38834 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:105,073,626
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 995456 as yet unmatched pairs. 37201 records in RAM.
INFO 2026-06-08 08:34:51 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:107,923,923
INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 994337 as yet unmatched pairs. 36066 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:107,962,972
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 991167 as yet unmatched pairs. 32886 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:117,098,656
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 987817 as yet unmatched pairs. 29486 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,970
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 985459 as yet unmatched pairs. 27113 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:130,070,745
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 982478 as yet unmatched pairs. 24099 records in RAM.
INFO 2026-06-08 08:34:59 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:135,166,096
INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 980143 as yet unmatched pairs. 21738 records in RAM.
INFO 2026-06-08 08:35:01 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,321
INFO 2026-06-08 08:35:01 MarkDuplicates Tracking 979209 as yet unmatched pairs. 20782 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:138,460,870
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 974722 as yet unmatched pairs. 16275 records in RAM.
INFO 2026-06-08 08:35:04 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:139,572,939
INFO 2026-06-08 08:35:04 MarkDuplicates Tracking 972060 as yet unmatched pairs. 13599 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:141,641,852
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 969376 as yet unmatched pairs. 10896 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 61s. Last read position: chr7:144,365,484
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 967153 as yet unmatched pairs. 8645 records in RAM.
INFO 2026-06-08 08:36:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:151,080,712
INFO 2026-06-08 08:36:09 MarkDuplicates Tracking 964027 as yet unmatched pairs. 5508 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:152,220,572
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 961415 as yet unmatched pairs. 2882 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr8:213,578
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 958574 as yet unmatched pairs. 50209 records in RAM.
INFO 2026-06-08 08:36:14 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:12,416,483
INFO 2026-06-08 08:36:14 MarkDuplicates Tracking 956086 as yet unmatched pairs. 47691 records in RAM.
INFO 2026-06-08 08:36:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:22,570,996
INFO 2026-06-08 08:36:16 MarkDuplicates Tracking 953506 as yet unmatched pairs. 45087 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr8:28,106,713
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 950735 as yet unmatched pairs. 42302 records in RAM.
INFO 2026-06-08 08:36:19 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:38,296,148
INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 947782 as yet unmatched pairs. 39334 records in RAM.
INFO 2026-06-08 08:36:21 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:41,609,790
INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 945037 as yet unmatched pairs. 36570 records in RAM.
INFO 2026-06-08 08:36:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:52,656,273
INFO 2026-06-08 08:36:22 MarkDuplicates Tracking 942490 as yet unmatched pairs. 33973 records in RAM.
INFO 2026-06-08 08:36:24 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:63,187,531
INFO 2026-06-08 08:36:24 MarkDuplicates Tracking 939926 as yet unmatched pairs. 31382 records in RAM.
INFO 2026-06-08 08:36:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:70,162,814
INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 937554 as yet unmatched pairs. 28976 records in RAM.
INFO 2026-06-08 08:36:27 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:86,529,040
INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 935449 as yet unmatched pairs. 26837 records in RAM.
INFO 2026-06-08 08:36:29 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:98,044,995
INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 933232 as yet unmatched pairs. 24597 records in RAM.
INFO 2026-06-08 08:36:30 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:100,718,177
INFO 2026-06-08 08:36:30 MarkDuplicates Tracking 933677 as yet unmatched pairs. 25034 records in RAM.
INFO 2026-06-08 08:36:32 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr8:108,228,339
INFO 2026-06-08 08:36:32 MarkDuplicates Tracking 928626 as yet unmatched pairs. 19957 records in RAM.
INFO 2026-06-08 08:36:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:119,240,269
INFO 2026-06-08 08:36:33 MarkDuplicates Tracking 924920 as yet unmatched pairs. 16210 records in RAM.
INFO 2026-06-08 08:36:35 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,373
INFO 2026-06-08 08:36:35 MarkDuplicates Tracking 922020 as yet unmatched pairs. 13292 records in RAM.
INFO 2026-06-08 08:36:37 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:140,532,002
INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 919614 as yet unmatched pairs. 10862 records in RAM.
INFO 2026-06-08 08:36:38 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,721,331
INFO 2026-06-08 08:36:38 MarkDuplicates Tracking 916234 as yet unmatched pairs. 7462 records in RAM.
INFO 2026-06-08 08:36:40 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,368
INFO 2026-06-08 08:36:40 MarkDuplicates Tracking 914068 as yet unmatched pairs. 5292 records in RAM.
INFO 2026-06-08 08:36:41 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:144,436,076
INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 910470 as yet unmatched pairs. 1672 records in RAM.
INFO 2026-06-08 08:36:43 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr9:2,115,979
INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 907635 as yet unmatched pairs. 80051 records in RAM.
INFO 2026-06-08 08:36:45 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:6,497,220
INFO 2026-06-08 08:36:45 MarkDuplicates Tracking 905134 as yet unmatched pairs. 77526 records in RAM.
INFO 2026-06-08 08:36:46 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:14,113,012
INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 904465 as yet unmatched pairs. 76842 records in RAM.
INFO 2026-06-08 08:36:48 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr9:14,146,704
INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 902472 as yet unmatched pairs. 74839 records in RAM.
INFO 2026-06-08 08:36:50 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,333
INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 901564 as yet unmatched pairs. 73899 records in RAM.
INFO 2026-06-08 08:36:51 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:21,859,310
INFO 2026-06-08 08:36:51 MarkDuplicates Tracking 895400 as yet unmatched pairs. 67724 records in RAM.
INFO 2026-06-08 08:36:53 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:35,074,905
INFO 2026-06-08 08:36:53 MarkDuplicates Tracking 892613 as yet unmatched pairs. 64909 records in RAM.
INFO 2026-06-08 08:36:54 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:37,441,182
INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 889746 as yet unmatched pairs. 62007 records in RAM.
INFO 2026-06-08 08:36:56 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:74,816,683
INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 887907 as yet unmatched pairs. 60149 records in RAM.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:87,498,961
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 885584 as yet unmatched pairs. 57798 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr9:93,229,740
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 882966 as yet unmatched pairs. 55161 records in RAM.
INFO 2026-06-08 08:37:01 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:93,259,000
INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 879219 as yet unmatched pairs. 51403 records in RAM.
INFO 2026-06-08 08:37:02 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:93,268,703
INFO 2026-06-08 08:37:02 MarkDuplicates Tracking 877385 as yet unmatched pairs. 49561 records in RAM.
INFO 2026-06-08 08:37:04 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr9:93,318,010
INFO 2026-06-08 08:37:04 MarkDuplicates Tracking 872893 as yet unmatched pairs. 45057 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:99,062,254
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 869894 as yet unmatched pairs. 42046 records in RAM.
INFO 2026-06-08 08:37:07 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr9:107,487,314
INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 867371 as yet unmatched pairs. 39509 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:114,048,756
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 864531 as yet unmatched pairs. 36654 records in RAM.
INFO 2026-06-08 08:37:10 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:114,169,210
INFO 2026-06-08 08:37:10 MarkDuplicates Tracking 862866 as yet unmatched pairs. 34979 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:114,292,165
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 859003 as yet unmatched pairs. 31092 records in RAM.
INFO 2026-06-08 08:37:14 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:121,167,539
INFO 2026-06-08 08:37:14 MarkDuplicates Tracking 855613 as yet unmatched pairs. 27683 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:125,263,550
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 852813 as yet unmatched pairs. 24859 records in RAM.
INFO 2026-06-08 08:37:17 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:128,185,708
INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 850210 as yet unmatched pairs. 22239 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:129,022,314
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 846924 as yet unmatched pairs. 18940 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:131,446,529
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 844242 as yet unmatched pairs. 16239 records in RAM.
INFO 2026-06-08 08:37:21 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,506
INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 841677 as yet unmatched pairs. 13665 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:133,992,092
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 839155 as yet unmatched pairs. 11128 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:136,226,784
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 836082 as yet unmatched pairs. 8047 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:136,510,665
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 832718 as yet unmatched pairs. 4659 records in RAM.
INFO 2026-06-08 08:37:28 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:137,301,627
INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 829351 as yet unmatched pairs. 1285 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr10:5,456,861
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 826739 as yet unmatched pairs. 53945 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:13,499,868
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 824114 as yet unmatched pairs. 51309 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr10:21,536,052
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 821147 as yet unmatched pairs. 48326 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:26,860,746
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 818702 as yet unmatched pairs. 45869 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:32,021,100
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 816685 as yet unmatched pairs. 43845 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:34,696,340
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 814026 as yet unmatched pairs. 41182 records in RAM.
INFO 2026-06-08 08:37:39 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:45,826,753
INFO 2026-06-08 08:37:39 MarkDuplicates Tracking 811902 as yet unmatched pairs. 39042 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:46,836,622
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 810437 as yet unmatched pairs. 37568 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:50,009,414
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 808909 as yet unmatched pairs. 36035 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:59,804,469
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 806717 as yet unmatched pairs. 33827 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:68,572,755
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 803687 as yet unmatched pairs. 30770 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:73,310,232
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 800938 as yet unmatched pairs. 28000 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:75,029,207
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 798445 as yet unmatched pairs. 25501 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:79,298,453
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 795817 as yet unmatched pairs. 22870 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:88,939,507
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 793904 as yet unmatched pairs. 20944 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:95,868,891
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 791130 as yet unmatched pairs. 18147 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:99,900,009
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 788445 as yet unmatched pairs. 15444 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:102,344,070
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 785643 as yet unmatched pairs. 12626 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:110,573,735
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 782773 as yet unmatched pairs. 9737 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:118,754,699
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 780186 as yet unmatched pairs. 7140 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:121,526,700
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 778065 as yet unmatched pairs. 5016 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:125,738,435
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 775268 as yet unmatched pairs. 2206 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr11:314,963
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 772561 as yet unmatched pairs. 84462 records in RAM.
INFO 2026-06-08 08:38:06 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:864,460
INFO 2026-06-08 08:38:06 MarkDuplicates Tracking 768924 as yet unmatched pairs. 80815 records in RAM.
INFO 2026-06-08 08:38:08 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:3,679,610
INFO 2026-06-08 08:38:08 MarkDuplicates Tracking 766257 as yet unmatched pairs. 78135 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,373
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 763736 as yet unmatched pairs. 75606 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:10,800,539
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 760745 as yet unmatched pairs. 72611 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:17,169,505
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 758289 as yet unmatched pairs. 70136 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:20,097,649
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 755671 as yet unmatched pairs. 67497 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:34,096,593
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 753207 as yet unmatched pairs. 65010 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:45,181,826
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 750467 as yet unmatched pairs. 62258 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:47,475,466
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 747904 as yet unmatched pairs. 59688 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:58,549,988
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 745222 as yet unmatched pairs. 56994 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:62,130,012
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 742505 as yet unmatched pairs. 54253 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:62,570,989
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 740236 as yet unmatched pairs. 51979 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:63,900,708
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 737202 as yet unmatched pairs. 48935 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:65,108,281
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 734058 as yet unmatched pairs. 45781 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,745
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 731305 as yet unmatched pairs. 43002 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:66,626,474
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 727894 as yet unmatched pairs. 39568 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:68,363,814
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 724863 as yet unmatched pairs. 36528 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:69,653,210
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 722439 as yet unmatched pairs. 34100 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:71,109,969
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 719932 as yet unmatched pairs. 31574 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:72,097,859
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 716208 as yet unmatched pairs. 27836 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:75,400,736
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 714611 as yet unmatched pairs. 26234 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:83,163,736
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 710598 as yet unmatched pairs. 22209 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:95,979,484
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 708282 as yet unmatched pairs. 19870 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:103,177,631
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 705441 as yet unmatched pairs. 17013 records in RAM.
INFO 2026-06-08 08:38:45 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:113,410,732
INFO 2026-06-08 08:38:45 MarkDuplicates Tracking 704252 as yet unmatched pairs. 15808 records in RAM.
INFO 2026-06-08 08:38:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:114,447,865
INFO 2026-06-08 08:38:47 MarkDuplicates Tracking 699775 as yet unmatched pairs. 11306 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:118,505,519
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 697211 as yet unmatched pairs. 8738 records in RAM.
INFO 2026-06-08 08:38:50 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:119,097,900
INFO 2026-06-08 08:38:50 MarkDuplicates Tracking 694285 as yet unmatched pairs. 5808 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:125,625,997
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 691497 as yet unmatched pairs. 3011 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:134,216,964
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 688714 as yet unmatched pairs. 220 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 3s. Last read position: chr12:900,485
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 686222 as yet unmatched pairs. 109624 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr12:6,582,864
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 683637 as yet unmatched pairs. 107020 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:7,137,006
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 680584 as yet unmatched pairs. 103961 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:10,882,230
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 681542 as yet unmatched pairs. 104911 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:10,882,402
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 681082 as yet unmatched pairs. 104445 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:10,930,716
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 678615 as yet unmatched pairs. 101977 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:10,930,860
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 679590 as yet unmatched pairs. 102940 records in RAM.
INFO 2026-06-08 08:39:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,223
INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 675528 as yet unmatched pairs. 98866 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,411
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 683088 as yet unmatched pairs. 106417 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,566
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 677879 as yet unmatched pairs. 101206 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,623
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 674314 as yet unmatched pairs. 97637 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,717
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 671923 as yet unmatched pairs. 95240 records in RAM.
INFO 2026-06-08 08:39:14 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,846
INFO 2026-06-08 08:39:14 MarkDuplicates Tracking 671635 as yet unmatched pairs. 94950 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:11,267,951
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 667910 as yet unmatched pairs. 91225 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:11,268,103
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 670634 as yet unmatched pairs. 93947 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:11,351,893
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 666424 as yet unmatched pairs. 89733 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,192
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 663350 as yet unmatched pairs. 86659 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,283
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 663907 as yet unmatched pairs. 87214 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,340
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 662574 as yet unmatched pairs. 85880 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,495
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 664876 as yet unmatched pairs. 88179 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr12:11,353,725
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 662341 as yet unmatched pairs. 85641 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,856
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 659324 as yet unmatched pairs. 82622 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:11,353,924
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 668034 as yet unmatched pairs. 91328 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr12:11,392,823
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 664509 as yet unmatched pairs. 87802 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,026
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 653415 as yet unmatched pairs. 76706 records in RAM.
INFO 2026-06-08 08:39:34 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,087
INFO 2026-06-08 08:39:34 MarkDuplicates Tracking 653339 as yet unmatched pairs. 76630 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,218
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 653145 as yet unmatched pairs. 76435 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,281
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 653505 as yet unmatched pairs. 76795 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,414
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 653870 as yet unmatched pairs. 77159 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,557
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 651291 as yet unmatched pairs. 74580 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,710
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 650991 as yet unmatched pairs. 74278 records in RAM.
INFO 2026-06-08 08:39:42 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:11,393,786
INFO 2026-06-08 08:39:42 MarkDuplicates Tracking 648331 as yet unmatched pairs. 71617 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:11,752,549
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 647332 as yet unmatched pairs. 70612 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr12:14,456,561
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 644621 as yet unmatched pairs. 67892 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:26,439,133
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 641914 as yet unmatched pairs. 65175 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:32,821,353
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 639221 as yet unmatched pairs. 62450 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:48,705,795
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 636636 as yet unmatched pairs. 59846 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,396
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 633989 as yet unmatched pairs. 57190 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:50,678,700
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 631474 as yet unmatched pairs. 54671 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:53,018,797
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 628588 as yet unmatched pairs. 51774 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:53,467,254
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 626416 as yet unmatched pairs. 49591 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,892
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 624978 as yet unmatched pairs. 48147 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,109,266
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 621040 as yet unmatched pairs. 44197 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:56,571,801
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 618203 as yet unmatched pairs. 41353 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,713
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 615849 as yet unmatched pairs. 38994 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr12:57,500,317
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 612851 as yet unmatched pairs. 35992 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:64,194,125
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 610336 as yet unmatched pairs. 33471 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:71,632,154
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 607993 as yet unmatched pairs. 31097 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:91,158,337
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 605357 as yet unmatched pairs. 28438 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr12:101,285,514
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 602693 as yet unmatched pairs. 25764 records in RAM.
INFO 2026-06-08 08:40:13 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:107,741,117
INFO 2026-06-08 08:40:13 MarkDuplicates Tracking 600362 as yet unmatched pairs. 23410 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:111,452,758
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 597592 as yet unmatched pairs. 20628 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:112,408,258
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 595382 as yet unmatched pairs. 18410 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:117,968,109
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 591933 as yet unmatched pairs. 14948 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:120,791,392
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 589235 as yet unmatched pairs. 12245 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:122,834,989
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 586378 as yet unmatched pairs. 9378 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:124,311,847
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 584049 as yet unmatched pairs. 7036 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:131,929,716
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 580557 as yet unmatched pairs. 3531 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:133,057,352
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 577515 as yet unmatched pairs. 482 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr13:20,067,304
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 575755 as yet unmatched pairs. 21348 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr13:28,270,839
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 572702 as yet unmatched pairs. 18286 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr13:39,013,610
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 570237 as yet unmatched pairs. 15806 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr13:45,969,081
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 567585 as yet unmatched pairs. 13139 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:59,971,034
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 565108 as yet unmatched pairs. 10647 records in RAM.
INFO 2026-06-08 08:40:35 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr13:85,794,221
INFO 2026-06-08 08:40:35 MarkDuplicates Tracking 562701 as yet unmatched pairs. 8227 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr13:101,452,866
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 559919 as yet unmatched pairs. 5438 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:110,508,134
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 557174 as yet unmatched pairs. 2687 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr14:20,455,938
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 554021 as yet unmatched pairs. 44513 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr14:21,503,672
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 551355 as yet unmatched pairs. 41837 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:23,360,762
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 548250 as yet unmatched pairs. 38725 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr14:24,440,167
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 545363 as yet unmatched pairs. 35832 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr14:35,742,466
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 542907 as yet unmatched pairs. 33361 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr14:50,204,307
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 540683 as yet unmatched pairs. 31123 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:58,366,123
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 538004 as yet unmatched pairs. 28432 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr14:64,053,312
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 535375 as yet unmatched pairs. 25794 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,004
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 532609 as yet unmatched pairs. 23024 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr14:71,707,118
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 529833 as yet unmatched pairs. 20231 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:74,781,964
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 527169 as yet unmatched pairs. 17561 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr14:77,113,882
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 524339 as yet unmatched pairs. 14729 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:91,937,038
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 521593 as yet unmatched pairs. 11963 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:99,510,643
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 518946 as yet unmatched pairs. 9276 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr14:102,209,342
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 516181 as yet unmatched pairs. 6502 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:104,942,054
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 513155 as yet unmatched pairs. 3465 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,076
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 510395 as yet unmatched pairs. 697 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr15:25,340,123
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 508383 as yet unmatched pairs. 49818 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr15:30,605,882
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 506214 as yet unmatched pairs. 47643 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:34,387,928
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 504319 as yet unmatched pairs. 45736 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr15:40,471,394
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 501871 as yet unmatched pairs. 43280 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:41,757,788
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 499353 as yet unmatched pairs. 40755 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:43,361,618
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 496641 as yet unmatched pairs. 38040 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:45,153,432
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 494191 as yet unmatched pairs. 35584 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr15:50,476,880
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 491587 as yet unmatched pairs. 32967 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr15:57,231,152
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 489683 as yet unmatched pairs. 31055 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:61,908,993
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 486596 as yet unmatched pairs. 27956 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:64,865,052
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 483879 as yet unmatched pairs. 25228 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:66,503,433
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 481115 as yet unmatched pairs. 22456 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:72,242,157
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 478544 as yet unmatched pairs. 19881 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:74,839,264
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 475689 as yet unmatched pairs. 17022 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:78,470,591
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 472870 as yet unmatched pairs. 14198 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:82,540,012
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 470746 as yet unmatched pairs. 12070 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr15:85,245,063
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 469233 as yet unmatched pairs. 10555 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:88,906,757
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 467251 as yet unmatched pairs. 8569 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr15:90,906,902
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 463649 as yet unmatched pairs. 4960 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr15:98,957,166
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 461215 as yet unmatched pairs. 2490 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr16:189,237
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 458405 as yet unmatched pairs. 80510 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:1,350,943
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 454751 as yet unmatched pairs. 76849 records in RAM.
INFO 2026-06-08 08:41:47 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,088,089
INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 451499 as yet unmatched pairs. 73587 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,064
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 448461 as yet unmatched pairs. 70544 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:2,768,995
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 445570 as yet unmatched pairs. 67649 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:3,767,863
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 442313 as yet unmatched pairs. 64388 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:9,156,516
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 439269 as yet unmatched pairs. 61336 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:14,251,904
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 437293 as yet unmatched pairs. 59351 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:14,951,920
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 435908 as yet unmatched pairs. 57966 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:16,318,506
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 434067 as yet unmatched pairs. 56114 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,324,105
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 433393 as yet unmatched pairs. 55437 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:18,788,123
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 433023 as yet unmatched pairs. 55065 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr16:21,403,530
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 430486 as yet unmatched pairs. 52522 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:21,454,100
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 429476 as yet unmatched pairs. 51512 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,506
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 429500 as yet unmatched pairs. 51529 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:22,485,854
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 427419 as yet unmatched pairs. 49445 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,734
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 427444 as yet unmatched pairs. 49470 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:24,570,184
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 425685 as yet unmatched pairs. 47707 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:28,608,726
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 423140 as yet unmatched pairs. 45159 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr16:29,381,633
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 421324 as yet unmatched pairs. 43327 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,053
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 420916 as yet unmatched pairs. 42918 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr16:29,813,429
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 419239 as yet unmatched pairs. 41235 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr16:30,225,519
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 417453 as yet unmatched pairs. 39447 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr16:30,721,223
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 415803 as yet unmatched pairs. 37791 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:31,184,213
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 413361 as yet unmatched pairs. 35342 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:47,461,494
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 410163 as yet unmatched pairs. 32137 records in RAM.
INFO 2026-06-08 08:42:23 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:53,888,907
INFO 2026-06-08 08:42:23 MarkDuplicates Tracking 407797 as yet unmatched pairs. 29763 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:56,834,390
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 404280 as yet unmatched pairs. 26238 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr16:66,932,685
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 401486 as yet unmatched pairs. 23434 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:68,339,409
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 398474 as yet unmatched pairs. 20419 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:70,031,010
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 395892 as yet unmatched pairs. 17836 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:72,106,079
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 393275 as yet unmatched pairs. 15212 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr16:83,032,010
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 390686 as yet unmatched pairs. 12604 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr16:87,748,696
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 387640 as yet unmatched pairs. 9544 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:88,434,008
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 384759 as yet unmatched pairs. 6659 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:89,280,117
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 381543 as yet unmatched pairs. 3438 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:89,907,242
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 378413 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 2s. Last read position: chr17:1,613,240
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 375671 as yet unmatched pairs. 106864 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:2,963,926
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 372947 as yet unmatched pairs. 104137 records in RAM.
INFO 2026-06-08 08:42:46 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:4,673,098
INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 369984 as yet unmatched pairs. 101167 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,039,669
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 367014 as yet unmatched pairs. 98188 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,605
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 364517 as yet unmatched pairs. 95688 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:7,906,874
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 361452 as yet unmatched pairs. 92619 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr17:9,149,836
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 358648 as yet unmatched pairs. 89813 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:16,690,554
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 356041 as yet unmatched pairs. 87196 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:18,317,634
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 353243 as yet unmatched pairs. 84398 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:21,015,882
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 351336 as yet unmatched pairs. 82488 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:28,759,215
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 348300 as yet unmatched pairs. 79448 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr17:31,230,879
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 345914 as yet unmatched pairs. 77056 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,002
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 343166 as yet unmatched pairs. 74298 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:36,953,797
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 340800 as yet unmatched pairs. 71927 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,099
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 339112 as yet unmatched pairs. 70234 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:39,261,437
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 336243 as yet unmatched pairs. 67365 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:40,093,019
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 333266 as yet unmatched pairs. 64384 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:41,828,837
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 330356 as yet unmatched pairs. 61466 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:42,811,679
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 327317 as yet unmatched pairs. 58419 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:44,399,973
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 324454 as yet unmatched pairs. 55544 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:46,039,776
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 322317 as yet unmatched pairs. 53406 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:47,151,806
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 321059 as yet unmatched pairs. 52140 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,500
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 320395 as yet unmatched pairs. 51462 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 61s. Last read position: chr17:50,187,083
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 319271 as yet unmatched pairs. 50334 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 68s. Last read position: chr17:50,189,858
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 313825 as yet unmatched pairs. 44883 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,129
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 310894 as yet unmatched pairs. 41951 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,499
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 307769 as yet unmatched pairs. 38823 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,808
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 303352 as yet unmatched pairs. 34401 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: chr17:57,105,912
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 299518 as yet unmatched pairs. 30557 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:59,070,825
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 296675 as yet unmatched pairs. 27706 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:61,874,913
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 294090 as yet unmatched pairs. 25115 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:64,503,816
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 291675 as yet unmatched pairs. 22696 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:67,912,976
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 289550 as yet unmatched pairs. 20565 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:74,203,704
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 286996 as yet unmatched pairs. 18007 records in RAM.
INFO 2026-06-08 08:45:43 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:75,625,555
INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 283668 as yet unmatched pairs. 14671 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:76,084,055
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 280463 as yet unmatched pairs. 11464 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:78,855,651
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 277602 as yet unmatched pairs. 8593 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr17:81,251,386
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 274447 as yet unmatched pairs. 5427 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:82,054,944
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 271168 as yet unmatched pairs. 2144 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr18:2,747,597
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 268175 as yet unmatched pairs. 21040 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr18:10,487,899
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 265813 as yet unmatched pairs. 18668 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr18:24,132,489
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 262847 as yet unmatched pairs. 15692 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr18:31,849,721
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 260146 as yet unmatched pairs. 12985 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr18:46,334,299
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 257771 as yet unmatched pairs. 10602 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr18:51,176,407
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 255572 as yet unmatched pairs. 8396 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 1s. Last read position: chr18:62,221,054
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 252545 as yet unmatched pairs. 5363 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr18:74,520,038
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 249048 as yet unmatched pairs. 1860 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 3s. Last read position: chr19:805,140
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 245924 as yet unmatched pairs. 102739 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr19:1,398,979
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 242420 as yet unmatched pairs. 99232 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:2,246,790
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 238995 as yet unmatched pairs. 95802 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:3,728,611
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 235712 as yet unmatched pairs. 92516 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:5,616,296
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 232679 as yet unmatched pairs. 89480 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr19:7,083,091
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 229444 as yet unmatched pairs. 86244 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,321,514
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 226787 as yet unmatched pairs. 83584 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,252,262
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 223593 as yet unmatched pairs. 80384 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:11,021,775
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 220658 as yet unmatched pairs. 77446 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:12,643,643
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 218127 as yet unmatched pairs. 74912 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:13,768,942
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 214835 as yet unmatched pairs. 71620 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:15,174,277
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 211734 as yet unmatched pairs. 68518 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,397
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 208927 as yet unmatched pairs. 65710 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr19:16,403,676
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 205606 as yet unmatched pairs. 62386 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr19:17,861,406
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 203593 as yet unmatched pairs. 60366 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:18,683,705
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 199453 as yet unmatched pairs. 56222 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:19,618,457
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 196228 as yet unmatched pairs. 52988 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:32,980,212
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 193907 as yet unmatched pairs. 50663 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,732
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 190698 as yet unmatched pairs. 47452 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:38,082,032
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 187931 as yet unmatched pairs. 44681 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:39,389,531
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 184875 as yet unmatched pairs. 41623 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:40,025,368
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 181906 as yet unmatched pairs. 38654 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:41,305,781
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 178965 as yet unmatched pairs. 35710 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,225
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 176130 as yet unmatched pairs. 32873 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:44,900,819
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 172885 as yet unmatched pairs. 29596 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:45,784,202
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 169738 as yet unmatched pairs. 26446 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,523
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 166311 as yet unmatched pairs. 23019 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:48,750,841
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 163317 as yet unmatched pairs. 20025 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:49,497,518
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 161073 as yet unmatched pairs. 17776 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:49,884,730
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 157103 as yet unmatched pairs. 13806 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:52,613,550
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 154103 as yet unmatched pairs. 10804 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:54,455,047
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 152006 as yet unmatched pairs. 8706 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:55,659,313
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 148257 as yet unmatched pairs. 4957 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:58,067,178
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 145691 as yet unmatched pairs. 2387 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr20:1,305,685
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 142590 as yet unmatched pairs. 38050 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,701
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 139610 as yet unmatched pairs. 35069 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr20:14,002,297
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 136878 as yet unmatched pairs. 32332 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr20:23,397,027
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 134297 as yet unmatched pairs. 29751 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:33,173,008
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 131485 as yet unmatched pairs. 26936 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr20:35,548,533
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 128501 as yet unmatched pairs. 23948 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr20:38,013,373
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 125617 as yet unmatched pairs. 21064 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr20:43,459,258
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 122751 as yet unmatched pairs. 18194 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:47,210,740
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 120071 as yet unmatched pairs. 15513 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr20:50,893,933
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 117588 as yet unmatched pairs. 13027 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr20:58,715,185
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 114276 as yet unmatched pairs. 9710 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,181
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 111661 as yet unmatched pairs. 7091 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr20:62,822,120
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 107511 as yet unmatched pairs. 2937 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr21:5,557,189
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 104377 as yet unmatched pairs. 19433 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,260,263
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 103397 as yet unmatched pairs. 18434 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 0s. Last read position: chr21:8,443,354
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 102198 as yet unmatched pairs. 17227 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr21:26,468,500
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 100380 as yet unmatched pairs. 15404 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,267
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 97707 as yet unmatched pairs. 12731 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr21:37,182,772
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 94857 as yet unmatched pairs. 9880 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:42,554,132
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 91876 as yet unmatched pairs. 6898 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:45,220,937
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 89134 as yet unmatched pairs. 4155 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr21:46,351,464
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 85802 as yet unmatched pairs. 823 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr22:19,456,624
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 83068 as yet unmatched pairs. 37180 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:21,694,756
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 80115 as yet unmatched pairs. 34226 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr22:24,054,919
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 77022 as yet unmatched pairs. 31133 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,029
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 74655 as yet unmatched pairs. 28765 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr22:30,293,632
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 71228 as yet unmatched pairs. 25338 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 2s. Last read position: chr22:35,330,445
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 68261 as yet unmatched pairs. 22371 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:37,568,221
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 65202 as yet unmatched pairs. 19312 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:37,983,581
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 62431 as yet unmatched pairs. 16541 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:39,318,428
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 59278 as yet unmatched pairs. 13388 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:41,178,125
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 56716 as yet unmatched pairs. 10825 records in RAM.
INFO 2026-06-08 08:47:48 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr22:42,879,051
INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 53958 as yet unmatched pairs. 8066 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:49,885,571
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 50536 as yet unmatched pairs. 4644 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr22:50,580,402
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 47149 as yet unmatched pairs. 1252 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:10,139,482
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 44179 as yet unmatched pairs. 36737 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:24,055,626
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 41599 as yet unmatched pairs. 34131 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:41,214,661
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 38920 as yet unmatched pairs. 31452 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:48,515,739
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 36061 as yet unmatched pairs. 28591 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:52,187,721
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 33074 as yet unmatched pairs. 25604 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:53,937,898
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 30435 as yet unmatched pairs. 22965 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:71,096,831
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 28340 as yet unmatched pairs. 20870 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:72,272,659
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 25850 as yet unmatched pairs. 18380 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chrX:77,688,880
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 22883 as yet unmatched pairs. 15413 records in RAM.
INFO 2026-06-08 08:48:07 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:103,216,435
INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 20375 as yet unmatched pairs. 12905 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:119,834,895
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 17820 as yet unmatched pairs. 10350 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:133,596,440
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 15194 as yet unmatched pairs. 7724 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chrX:152,945,353
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 12694 as yet unmatched pairs. 5221 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chrX:154,360,536
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 10041 as yet unmatched pairs. 2568 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrM:2,449
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 7388 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,155
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 5744 as yet unmatched pairs. 58 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,391
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 553 as yet unmatched pairs. 460 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 634954334 records. 0 pairs never matched.
INFO 2026-06-08 08:48:57 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140744; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:48:57 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:49:01 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:49:01 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:49:04 OpticalDuplicateFinder Large duplicate set. size = 1307
INFO 2026-06-08 08:49:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,155
INFO 2026-06-08 08:49:06 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:49:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,524
INFO 2026-06-08 08:49:09 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 08:49:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,785
INFO 2026-06-08 08:49:09 OpticalDuplicateFinder Large duplicate set. size = 1555
INFO 2026-06-08 08:49:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,598
INFO 2026-06-08 08:49:12 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 08:49:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,362
INFO 2026-06-08 08:49:16 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 08:49:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,010
INFO 2026-06-08 08:49:23 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:49:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,815
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,467
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1027
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,770
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,342
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1729
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,663
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,112
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,970
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,728
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,212
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1464
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,712
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,748
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,327
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,169
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 2192
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,428
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,192
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,047
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:49:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,104
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,669
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder Large duplicate set. size = 2185
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,386
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,892
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,157
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder Large duplicate set. size = 1694
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,990
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder Large duplicate set. size = 2037
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,504
INFO 2026-06-08 08:49:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,591
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder Large duplicate set. size = 1340
INFO 2026-06-08 08:49:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,812
INFO 2026-06-08 08:49:32 OpticalDuplicateFinder Large duplicate set. size = 2162
INFO 2026-06-08 08:49:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,033
INFO 2026-06-08 08:49:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,092
INFO 2026-06-08 08:49:32 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 08:49:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,851
INFO 2026-06-08 08:49:35 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 08:49:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,837
INFO 2026-06-08 08:49:36 OpticalDuplicateFinder Large duplicate set. size = 1757
INFO 2026-06-08 08:49:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,519
INFO 2026-06-08 08:49:36 OpticalDuplicateFinder Large duplicate set. size = 1470
INFO 2026-06-08 08:49:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,936
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,229
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder Large duplicate set. size = 1475
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,567
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,262
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:49:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,375
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1126
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,068
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,705
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,152
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 2262
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,186
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 2244
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,033
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,556
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,674
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,925
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,583
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,394
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1363
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,375
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,687
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,745
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1034
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,965
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,822
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,779
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,823
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1519
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,031
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1083
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,181
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,004
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 08:49:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,698
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,659
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1895
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,391
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1907
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,227
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,770
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1522
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,841
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,026
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 4880
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,746
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,059
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,729
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,152
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,074
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,342
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1208
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,851
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1469
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,973
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1790
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,142
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,709
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,096
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2075
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,932
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,760
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,978
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,005
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1857
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,040
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,952
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1271
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,251
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,941
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1734
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,085
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2659
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,053
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,799
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1988
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,977
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,929
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2750
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,317
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,524
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,186
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1658
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,341
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,650
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,544
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2559
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,780
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,453
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,650
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1367
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,104
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1172
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,942
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,513
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2086
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,818
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,195
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 2019
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,796
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,937
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1073
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,125
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,814
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1536
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,964
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder Large duplicate set. size = 1469
INFO 2026-06-08 08:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,443
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1366
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,415
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,243
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1623
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,999
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,954
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,792
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1280
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,223
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,307
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1344
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,935
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1390
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,250
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,607
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,779
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1482
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,105
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,428
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1624
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,471
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1825
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,953
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,476
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1362
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,750
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1146
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,083
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,245
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,117
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,651
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,817
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,233
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1338
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,822
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1531
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,378
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1686
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,752
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1586
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,122
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1939
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,810
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,390
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,257
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1547
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,610
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1273
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,086
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,056
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 2760
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,387
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,397
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder Large duplicate set. size = 1843
INFO 2026-06-08 08:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,152
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,148
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,805
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,992
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,959
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,808
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1094
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,809
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,817
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,980
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1446
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,085
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,697
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,036
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1441
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,026
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1586
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,003
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,149
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2001
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,740
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,581
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,356
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,051
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,811
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2795
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,568
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1439
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2915
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,859
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,534
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2422
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,945
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,808
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1524
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,805
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1884
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,072
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1616
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,723
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1304
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,367
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,389
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1158
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,488
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1702
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,370
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1750
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,229
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1552
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,663
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,411
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,166
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1613
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,495
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,186
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1286
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,284
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,178
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1528
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,606
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2010
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,380
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 2006
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,173
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,485
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,351
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,290
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1683
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,699
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder Large duplicate set. size = 1720
INFO 2026-06-08 08:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,744
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,011
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,079
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,207
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2084
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,130
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,527
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1818
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,677
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1220
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,944
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2176
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,127
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,515
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2262
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,538
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,411
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,223
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,734
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,870
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1170
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,574
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1237
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,936
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1553
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,694
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1603
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,620
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,498
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1447
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,122
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,085
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,013
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,023
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1446
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,114
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,599
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,160
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1575
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,333
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,111
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,441
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 3401
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,335
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,045
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,351
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,259
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1483
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,747
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,031
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 3041
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,215
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,231
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,624
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,030
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1834
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,739
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1570
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,572
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,669
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 3354
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,789
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,354
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,190
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,995
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,510
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,362
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,015
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,375
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2550
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,238
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,979
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1434
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,636
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1368
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,448
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1499
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,033
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,236
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2125
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,799
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,603
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 1165
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,941
INFO 2026-06-08 08:49:44 OpticalDuplicateFinder Large duplicate set. size = 2295
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,024
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,803
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1279
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,780
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 2072
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,998
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,575
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,178
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1773
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,819
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,131
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1131
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,007
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1376
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,130
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,554
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,806
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,532
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1829
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,211
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,438
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:49:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,771
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder Large duplicate set. size = 1764
INFO 2026-06-08 08:49:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,880
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 08:49:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,917
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1260
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,095
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,207
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1799
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,008
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,816
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,215
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1408
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,935
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1728
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,112
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1665
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,890
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1868
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,575
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:49:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,333
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,734
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,583
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,372
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder Large duplicate set. size = 1409
INFO 2026-06-08 08:49:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,935
INFO 2026-06-08 08:50:04 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 08:50:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,820
INFO 2026-06-08 08:50:25 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:50:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:51:23 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:51:24 MarkDuplicates After generateDuplicateIndexes freeMemory: 203842216; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:51:24 MarkDuplicates Marking 287180458 records as duplicates.
INFO 2026-06-08 08:51:24 MarkDuplicates Found 6465048 optical duplicate clusters.
INFO 2026-06-08 08:51:24 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:51:40 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:24,648,868
INFO 2026-06-08 08:51:55 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 15s. Last read position: chr1:51,409,583
INFO 2026-06-08 08:52:10 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 14s. Last read position: chr1:119,915,517
INFO 2026-06-08 08:52:25 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:00s. Time for last 10,000,000: 15s. Last read position: chr1:156,136,240
INFO 2026-06-08 08:52:40 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 14s. Last read position: chr1:220,528,751
INFO 2026-06-08 08:52:59 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:34s. Time for last 10,000,000: 19s. Last read position: chr2:32,916,256
INFO 2026-06-08 08:53:25 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 25s. Last read position: chr2:69,123,051
INFO 2026-06-08 08:53:49 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:24s. Time for last 10,000,000: 24s. Last read position: chr2:112,390,996
INFO 2026-06-08 08:54:10 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:45s. Time for last 10,000,000: 20s. Last read position: chr2:201,718,166
INFO 2026-06-08 08:54:29 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:05s. Time for last 10,000,000: 19s. Last read position: chr2:240,014,771
INFO 2026-06-08 08:54:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:22s. Time for last 10,000,000: 17s. Last read position: chr3:47,772,825
INFO 2026-06-08 08:55:05 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:40s. Time for last 10,000,000: 17s. Last read position: chr3:113,453,558
INFO 2026-06-08 08:55:21 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 16s. Last read position: chr3:195,780,830
INFO 2026-06-08 08:55:37 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:13s. Time for last 10,000,000: 16s. Last read position: chr4:70,768,581
INFO 2026-06-08 08:55:54 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 16s. Last read position: chr4:186,606,108
INFO 2026-06-08 08:56:12 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:47s. Time for last 10,000,000: 17s. Last read position: chr5:75,674,474
INFO 2026-06-08 08:56:28 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 16s. Last read position: chr5:141,096,192
INFO 2026-06-08 08:56:44 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:20s. Time for last 10,000,000: 16s. Last read position: chr5:177,512,513
INFO 2026-06-08 08:57:02 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 17s. Last read position: chr6:30,606,786
INFO 2026-06-08 08:57:21 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 18s. Last read position: chr6:52,995,770
INFO 2026-06-08 08:57:38 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 17s. Last read position: chr6:135,181,512
INFO 2026-06-08 08:57:58 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:34s. Time for last 10,000,000: 20s. Last read position: chr7:5,332,935
INFO 2026-06-08 08:58:16 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 17s. Last read position: chr7:72,969,721
INFO 2026-06-08 08:58:33 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 17s. Last read position: chr7:99,458,284
INFO 2026-06-08 08:58:50 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:26s. Time for last 10,000,000: 17s. Last read position: chr7:127,887,970
INFO 2026-06-08 08:59:07 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 16s. Last read position: chr8:213,578
INFO 2026-06-08 08:59:23 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 16s. Last read position: chr8:98,044,995
INFO 2026-06-08 08:59:40 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 17s. Last read position: chr9:6,497,220
INFO 2026-06-08 08:59:57 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 16s. Last read position: chr9:93,259,000
INFO 2026-06-08 09:00:13 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 16s. Last read position: chr9:128,185,708
INFO 2026-06-08 09:00:30 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 16s. Last read position: chr10:21,536,052
INFO 2026-06-08 09:00:46 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 16s. Last read position: chr10:75,029,207
INFO 2026-06-08 09:01:02 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 16s. Last read position: chr11:314,963
INFO 2026-06-08 09:01:18 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:53s. Time for last 10,000,000: 15s. Last read position: chr11:58,549,988
INFO 2026-06-08 09:01:34 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:09s. Time for last 10,000,000: 15s. Last read position: chr11:72,097,859
INFO 2026-06-08 09:01:50 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 15s. Last read position: chr11:134,216,964
INFO 2026-06-08 09:02:05 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 15s. Last read position: chr12:11,267,566
INFO 2026-06-08 09:02:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 14s. Last read position: chr12:11,353,495
INFO 2026-06-08 09:02:34 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 14s. Last read position: chr12:11,393,557
INFO 2026-06-08 09:02:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 14s. Last read position: chr12:53,018,797
INFO 2026-06-08 09:03:04 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 14s. Last read position: chr12:101,285,514
INFO 2026-06-08 09:03:18 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 14s. Last read position: chr13:20,067,304
INFO 2026-06-08 09:03:34 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 15s. Last read position: chr14:23,360,762
INFO 2026-06-08 09:03:49 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:24s. Time for last 10,000,000: 15s. Last read position: chr14:91,937,038
INFO 2026-06-08 09:04:04 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 14s. Last read position: chr15:43,361,618
INFO 2026-06-08 09:04:19 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 15s. Last read position: chr15:82,540,012
INFO 2026-06-08 09:04:34 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 15s. Last read position: chr16:3,767,863
INFO 2026-06-08 09:04:49 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 15s. Last read position: chr16:22,485,854
INFO 2026-06-08 09:05:04 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:39s. Time for last 10,000,000: 14s. Last read position: chr16:47,461,494
INFO 2026-06-08 09:05:19 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:55s. Time for last 10,000,000: 15s. Last read position: chr16:89,280,117
INFO 2026-06-08 09:05:35 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 15s. Last read position: chr17:18,317,634
INFO 2026-06-08 09:05:51 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 15s. Last read position: chr17:42,811,679
INFO 2026-06-08 09:06:06 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 15s. Last read position: chr17:57,105,912
INFO 2026-06-08 09:06:22 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:57s. Time for last 10,000,000: 15s. Last read position: chr17:82,054,944
INFO 2026-06-08 09:06:37 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:13s. Time for last 10,000,000: 15s. Last read position: chr19:1,398,979
INFO 2026-06-08 09:06:52 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 14s. Last read position: chr19:15,174,277
INFO 2026-06-08 09:07:07 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 14s. Last read position: chr19:40,025,368
INFO 2026-06-08 09:07:21 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 14s. Last read position: chr19:54,455,047
INFO 2026-06-08 09:07:37 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 15s. Last read position: chr20:43,459,258
INFO 2026-06-08 09:07:51 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:27s. Time for last 10,000,000: 14s. Last read position: chr21:33,551,267
INFO 2026-06-08 09:08:06 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:41s. Time for last 10,000,000: 14s. Last read position: chr22:35,330,445
INFO 2026-06-08 09:08:21 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 14s. Last read position: chrX:41,214,661
INFO 2026-06-08 09:08:36 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:11s. Time for last 10,000,000: 14s. Last read position: chrX:152,945,353
INFO 2026-06-08 09:08:51 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:08:51 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:08:51 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:08:51 MarkDuplicates Before output close freeMemory: 203807504; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:51 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:08:51 MarkDuplicates After output close freeMemory: 104050944; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:08:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.39 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory