File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/b7cf01d507351a632ebd8b16063205/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:27:37
                             Started mapping on |	Jun 08 10:34:08
                                    Finished on |	Jun 08 11:32:21
       Mapping speed, Million of reads per hour |	303.59

                          Number of input reads |	294565000
                      Average input read length |	210
                                    UNIQUE READS:
                   Uniquely mapped reads number |	277540264
                        Uniquely mapped reads % |	94.22%
                          Average mapped length |	209.99
                       Number of splices: Total |	238350729
            Number of splices: Annotated (sjdb) |	234702869
                       Number of splices: GT/AG |	235967364
                       Number of splices: GC/AG |	1264601
                       Number of splices: AT/AC |	127118
               Number of splices: Non-canonical |	991646
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.84
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12757359
             % of reads mapped to multiple loci |	4.33%
        Number of reads mapped to too many loci |	687472
             % of reads mapped to too many loci |	0.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3146699
                 % of reads unmapped: too short |	1.07%
                Number of reads unmapped: other |	433206
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%