Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/ce2e3edefa9b02be065ce810be072d/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0c61264156c4b71f0c21c6655e14f8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0c61264156c4b71f0c21c6655e14f8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/6fa3904034808502e9bc4a4d1ec957/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 124.0 bp
  Median Fragment Length: 116.0 bp
  pct_mito_est_counts: 0.013%
  pct_ribo_est_counts: 1.124%
  pct_hk_est_counts: 0.476%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.026%
  pct_ribo_tpm: 3.223%
  pct_hk_tpm: 0.702%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.013%