AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 188
Pass (FILTER=PASS): 20 (10.6%)
Fail (FILTER=FAIL): 168 (89.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 6
All 6 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 80
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 21
confidence_below_min(low<high): 14
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
total_reads_below_min(6.0<8.0): 1
Breakdown by confidence:
high: 20 pass, 1 fail (total: 21)
low: 0 pass, 75 fail (total: 75)
medium: 0 pass, 92 fail (total: 92)
Arriba filter: 188 rows -> 20 PASS; wrote 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt