File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/c0347ccb8a778d43994309434bf0a4/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:27:49
                             Started mapping on |	Jun 08 11:34:21
                                    Finished on |	Jun 08 12:21:51
       Mapping speed, Million of reads per hour |	372.53

                          Number of input reads |	294921407
                      Average input read length |	238
                                    UNIQUE READS:
                   Uniquely mapped reads number |	282087204
                        Uniquely mapped reads % |	95.65%
                          Average mapped length |	237.32
                       Number of splices: Total |	298952496
            Number of splices: Annotated (sjdb) |	296088259
                       Number of splices: GT/AG |	295187208
                       Number of splices: GC/AG |	2481871
                       Number of splices: AT/AC |	296297
               Number of splices: Non-canonical |	987120
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.89
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.77
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8284646
             % of reads mapped to multiple loci |	2.81%
        Number of reads mapped to too many loci |	418523
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3762088
                 % of reads unmapped: too short |	1.28%
                Number of reads unmapped: other |	368946
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%