File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/5b97e668afecc403e22c035401dbd1/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:01:53
                             Started mapping on |	Jun 08 11:08:21
                                    Finished on |	Jun 08 11:54:00
       Mapping speed, Million of reads per hour |	387.71

                          Number of input reads |	294980563
                      Average input read length |	229
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281849080
                        Uniquely mapped reads % |	95.55%
                          Average mapped length |	228.44
                       Number of splices: Total |	269190643
            Number of splices: Annotated (sjdb) |	265120083
                       Number of splices: GT/AG |	266066725
                       Number of splices: GC/AG |	1945119
                       Number of splices: AT/AC |	237364
               Number of splices: Non-canonical |	941435
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.90
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8559820
             % of reads mapped to multiple loci |	2.90%
        Number of reads mapped to too many loci |	405208
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3653269
                 % of reads unmapped: too short |	1.24%
                Number of reads unmapped: other |	513186
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%