AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 133
Pass (FILTER=PASS): 5 (3.8%)
Fail (FILTER=FAIL): 128 (96.2%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 70
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
confidence_below_min(low<high): 5
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
confidence_below_min(low<high);aih_curated_blacklist: 1
total_reads_below_min(4.0<8.0): 1
confidence_below_min(medium<high);aih_curated_blacklist: 1
Breakdown by confidence:
high: 5 pass, 3 fail (total: 8)
low: 0 pass, 40 fail (total: 40)
medium: 0 pass, 85 fail (total: 85)
Arriba filter: 133 rows -> 5 PASS; wrote 1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt