Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/e75e1b484fa1d1daf321f5f6f6171f/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/8e72542a3258e70960922b82b82078/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/8e72542a3258e70960922b82b82078/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/e75e1b484fa1d1daf321f5f6f6171f/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/6eea4b0ece97d2622ab4dc3cf65ae5/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.eM4XzRXFR2/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary
-sample contains 34655956 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir -J /tmp/nxf.eM4XzRXFR2/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -O /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.eM4XzRXFR2/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
[10000], rate=40000.00/min
[20000], rate=40000.00/min
[30000], rate=40909.09/min
[40000], rate=42105.26/min
[50000], rate=43478.26/min
[60000], rate=47368.42/min
[70000], rate=50000.00/min
[80000], rate=47524.75/min
[90000], rate=46551.72/min
[100000], rate=46153.85/min
[110000], rate=46478.87/min
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[270000], rate=58909.09/min
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[300000], rate=61016.95/min
[310000], rate=61589.40/min
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[340000], rate=63551.40/min
[350000], rate=63829.79/min
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[370000], rate=64347.83/min
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[410000], rate=64397.91/min
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[440000], rate=64864.86/min
[450000], rate=65060.24/min
[460000], rate=65558.19/min -building interval tree based on /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=50000.00/min
[20000], rate=54545.45/min
[30000], rate=56250.00/min
[40000], rate=54545.45/min
[50000], rate=49180.33/min
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[70000], rate=44680.85/min
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[100000], rate=45801.53/min
[110000], rate=47142.86/min
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[130000], rate=49367.09/min
[140000], rate=50602.41/min
[150000], rate=52023.12/min
[160000], rate=53932.58/min
[170000], rate=56666.67/min
[180000], rate=58378.38/min
[190000], rate=58163.27/min
[200000], rate=59701.49/min
[210000], rate=62068.97/min
[220000], rate=63768.12/min
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[240000], rate=65454.55/min
[250000], rate=66079.30/min
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[270000], rate=67782.43/min
[280000], rate=67469.88/min
[290000], rate=67181.47/min
[300000], rate=67164.18/min
[310000], rate=67391.30/min
[320000], rate=65753.42/min
[330000], rate=64495.11/min
[340000], rate=63354.04/min
[350000], rate=62874.25/min
[360000], rate=62790.70/min
[370000], rate=63793.10/min
[380000], rate=63687.15/min
[390000], rate=63072.78/min
[400000], rate=62827.23/min
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[440000], rate=61538.46/min
[450000], rate=61643.84/min
[460000], rate=62022.47/min -building interval tree based on /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=50000.00/min
[20000], rate=52173.91/min
[30000], rate=56250.00/min
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[50000], rate=53571.43/min
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[440000], rate=52905.81/min
[450000], rate=52631.58/min -building interval tree based on /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
[10000], rate=66666.67/min
[20000], rate=80000.00/min
[30000], rate=100000.00/min
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[50000], rate=96774.19/min
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[440000], rate=51063.83/min
[450000], rate=50943.40/min
[460000], rate=50828.73/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir --filt_file /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
4000000.00 reads per min processed...
4500000.00 reads per min processed...
4000000.00 reads per min processed...
3750000.00 reads per min processed...
4000000.00 reads per min processed...
3818181.82 reads per min processed...
4000000.00 reads per min processed...
4153846.15 reads per min processed...
4285714.29 reads per min processed...
4125000.00 reads per min processed...
4235294.12 reads per min processed...
4105263.16 reads per min processed...
4200000.00 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.eM4XzRXFR2/1173_SFA_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -21099.777560
EM: Round [1] log likelihood: -21060.168733
EM: Round [2] log likelihood: -21045.182940
EM: Round [3] log likelihood: -21038.833200
EM: Round [4] log likelihood: -21035.851140
EM: Round [5] log likelihood: -21034.338344
EM: Round [6] log likelihood: -21033.523022
EM: Round [7] log likelihood: -21033.060117
EM: Round [8] log likelihood: -21032.784509
EM: Round [9] log likelihood: -21032.613054
EM: Round [10] log likelihood: -21032.502035
EM: Round [11] log likelihood: -21032.427517
EM: Round [12] log likelihood: -21032.375873
EM: Round [13] log likelihood: -21032.339048
EM: Round [14] log likelihood: -21032.312109
EM: Round [15] log likelihood: -21032.291934
EM: Round [16] log likelihood: -21032.276489
EM: Round [17] log likelihood: -21032.264418
EM: Round [18] log likelihood: -21032.254790
EM: Round [19] log likelihood: -21032.246963
EM: Round [20] log likelihood: -21032.240481
EM: Round [21] log likelihood: -21032.235017
EM: Round [22] log likelihood: -21032.230335
EM: Round [23] log likelihood: -21032.226264
EM: Round [24] log likelihood: -21032.222675
EM: Round [25] log likelihood: -21032.219474
EM: Round [26] log likelihood: -21032.216589
EM: Round [27] log likelihood: -21032.213965
EM: Round [28] log likelihood: -21032.211562
EM: Round [29] log likelihood: -21032.209347
EM: Round [30] log likelihood: -21032.207294
EM: Round [31] log likelihood: -21032.205383
EM: Round [32] log likelihood: -21032.203599
EM: Round [33] log likelihood: -21032.201928
EM: Round [34] log likelihood: -21032.200359
EM: Round [35] log likelihood: -21032.198883
EM: Round [36] log likelihood: -21032.197492
EM: Round [37] log likelihood: -21032.196179
EM: Round [38] log likelihood: -21032.194939
EM: Round [39] log likelihood: -21032.193767
EM: Round [40] log likelihood: -21032.192658
EM: Round [41] log likelihood: -21032.191608
EM: Round [42] log likelihood: -21032.190613
EM: Round [43] log likelihood: -21032.189670
EM: Round [44] log likelihood: -21032.188776
EM: Round [45] log likelihood: -21032.187927
EM: Round [46] log likelihood: -21032.187122
EM: Round [47] log likelihood: -21032.186358
EM: Round [48] log likelihood: -21032.185633
EM: Round [49] log likelihood: -21032.184944
EM: Round [50] log likelihood: -21032.184289
EM: Round [51] log likelihood: -21032.183667
EM: Round [52] log likelihood: -21032.183076
EM: Round [53] log likelihood: -21032.182515
EM: Round [54] log likelihood: -21032.181981
EM: Round [55] log likelihood: -21032.181473
EM: Round [56] log likelihood: -21032.180991
EM: Round [57] log likelihood: -21032.180532
EM: Round [58] log likelihood: -21032.180095
EM: Round [59] log likelihood: -21032.179680
EM: Round [60] log likelihood: -21032.179285
EM: Round [61] log likelihood: -21032.178909
EM: Round [62] log likelihood: -21032.178551
EM: Round [63] log likelihood: -21032.178211
EM: Round [64] log likelihood: -21032.177886
EM: Round [65] log likelihood: -21032.177578
EM: Round [66] log likelihood: -21032.177284
EM: Round [67] log likelihood: -21032.177004
EM: Round [68] log likelihood: -21032.176738
EM: Round [69] log likelihood: -21032.176484
EM: Round [70] log likelihood: -21032.176243
EM: Round [71] log likelihood: -21032.176013
EM: Round [72] log likelihood: -21032.175793
EM: Round [73] log likelihood: -21032.175584
EM: Round [74] log likelihood: -21032.175385
EM: Round [75] log likelihood: -21032.175195
EM: Round [76] log likelihood: -21032.175014
EM: Round [77] log likelihood: -21032.174842
EM: Round [78] log likelihood: -21032.174678
EM: Round [79] log likelihood: -21032.174521
EM: Round [80] log likelihood: -21032.174371
EM: Round [81] log likelihood: -21032.174229
EM: Round [82] log likelihood: -21032.174093
EM: Round [83] log likelihood: -21032.173963
EM: Round [84] log likelihood: -21032.173839
EM: Round [85] log likelihood: -21032.173721
EM: Round [86] log likelihood: -21032.173608
EM: Round [87] log likelihood: -21032.173501
EM: Round [88] log likelihood: -21032.173398
EM: Round [89] log likelihood: -21032.173300
EM: Stopping iterations at round 89 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -21082.865723
EM: Round [1] log likelihood: -21045.781875
EM: Round [2] log likelihood: -21033.065359
EM: Round [3] log likelihood: -21028.026610
EM: Round [4] log likelihood: -21025.782134
EM: Round [5] log likelihood: -21024.697098
EM: Round [6] log likelihood: -21024.137771
EM: Round [7] log likelihood: -21023.832672
EM: Round [8] log likelihood: -21023.657137
EM: Round [9] log likelihood: -21023.550836
EM: Round [10] log likelihood: -21023.483239
EM: Round [11] log likelihood: -21023.438245
EM: Round [12] log likelihood: -21023.407018
EM: Round [13] log likelihood: -21023.384510
EM: Round [14] log likelihood: -21023.367729
EM: Round [15] log likelihood: -21023.354831
EM: Round [16] log likelihood: -21023.344645
EM: Round [17] log likelihood: -21023.336398
EM: Round [18] log likelihood: -21023.329573
EM: Round [19] log likelihood: -21023.323809
EM: Round [20] log likelihood: -21023.318853
EM: Round [21] log likelihood: -21023.314526
EM: Round [22] log likelihood: -21023.310696
EM: Round [23] log likelihood: -21023.307264
EM: Round [24] log likelihood: -21023.304160
EM: Round [25] log likelihood: -21023.301327
EM: Round [26] log likelihood: -21023.298724
EM: Round [27] log likelihood: -21023.296319
EM: Round [28] log likelihood: -21023.294085
EM: Round [29] log likelihood: -21023.292003
EM: Round [30] log likelihood: -21023.290056
EM: Round [31] log likelihood: -21023.288230
EM: Round [32] log likelihood: -21023.286515
EM: Round [33] log likelihood: -21023.284899
EM: Round [34] log likelihood: -21023.283377
EM: Round [35] log likelihood: -21023.281939
EM: Round [36] log likelihood: -21023.280581
EM: Round [37] log likelihood: -21023.279297
EM: Round [38] log likelihood: -21023.278081
EM: Round [39] log likelihood: -21023.276930
EM: Round [40] log likelihood: -21023.275840
EM: Round [41] log likelihood: -21023.274806
EM: Round [42] log likelihood: -21023.273826
EM: Round [43] log likelihood: -21023.272896
EM: Round [44] log likelihood: -21023.272013
EM: Round [45] log likelihood: -21023.271176
EM: Round [46] log likelihood: -21023.270380
EM: Round [47] log likelihood: -21023.269625
EM: Round [48] log likelihood: -21023.268908
EM: Round [49] log likelihood: -21023.268226
EM: Round [50] log likelihood: -21023.267578
EM: Round [51] log likelihood: -21023.266963
EM: Round [52] log likelihood: -21023.266377
EM: Round [53] log likelihood: -21023.265821
EM: Round [54] log likelihood: -21023.265292
EM: Round [55] log likelihood: -21023.264789
EM: Round [56] log likelihood: -21023.264310
EM: Round [57] log likelihood: -21023.263855
EM: Round [58] log likelihood: -21023.263422
EM: Round [59] log likelihood: -21023.263010
EM: Round [60] log likelihood: -21023.262617
EM: Round [61] log likelihood: -21023.262244
EM: Round [62] log likelihood: -21023.261889
EM: Round [63] log likelihood: -21023.261551
EM: Round [64] log likelihood: -21023.261229
EM: Round [65] log likelihood: -21023.260922
EM: Round [66] log likelihood: -21023.260630
EM: Round [67] log likelihood: -21023.260352
EM: Round [68] log likelihood: -21023.260087
EM: Round [69] log likelihood: -21023.259835
EM: Round [70] log likelihood: -21023.259595
EM: Round [71] log likelihood: -21023.259366
EM: Round [72] log likelihood: -21023.259148
EM: Round [73] log likelihood: -21023.258940
EM: Round [74] log likelihood: -21023.258742
EM: Round [75] log likelihood: -21023.258553
EM: Round [76] log likelihood: -21023.258373
EM: Round [77] log likelihood: -21023.258201
EM: Round [78] log likelihood: -21023.258037
EM: Round [79] log likelihood: -21023.257881
EM: Round [80] log likelihood: -21023.257733
EM: Round [81] log likelihood: -21023.257591
EM: Round [82] log likelihood: -21023.257455
EM: Round [83] log likelihood: -21023.257326
EM: Round [84] log likelihood: -21023.257203
EM: Round [85] log likelihood: -21023.257085
EM: Round [86] log likelihood: -21023.256973
EM: Round [87] log likelihood: -21023.256866
EM: Round [88] log likelihood: -21023.256763
EM: Round [89] log likelihood: -21023.256665
EM: Stopping iterations at round 89 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 34655956 > /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir > /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir --annotate /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir
-done, see /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 340, filtered: 2108)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.eM4XzRXFR2/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.eM4XzRXFR2/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000253784.1]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000175061.18]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000227638.2]
WARNING, no entry stored in dbm for [ENSG00000276375.1]
WARNING, no entry stored in dbm for [ENSG00000240225.10]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000127589.4]
WARNING, no entry stored in dbm for [ENSG00000199568.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000258038.6]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000266904.6]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000248980.1]
WARNING, no entry stored in dbm for [ENSG00000238062.6]
WARNING, no entry stored in dbm for [ENSG00000247498.10]
WARNING, no entry stored in dbm for [ENSG00000226083.5]
WARNING, no entry stored in dbm for [ENSG00000285045.1]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000242058.2]
WARNING, no entry stored in dbm for [ENSG00000241625.3]
WARNING, no entry stored in dbm for [ENSG00000278771.1]
WARNING, no entry stored in dbm for [ENSG00000241625.3]
WARNING, no entry stored in dbm for [ENSG00000276168.1]
WARNING, no entry stored in dbm for [ENSG00000241625.3]
WARNING, no entry stored in dbm for [ENSG00000282885.2]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000205578.6]
WARNING, no entry stored in dbm for [ENSG00000206763.1]
WARNING, no entry stored in dbm for [ENSG00000244257.5]
WARNING, no entry stored in dbm for [ENSG00000274602.5]
WARNING, no entry stored in dbm for [ENSG00000215604.3]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000236172.7]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249669.10]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000229694.7]
WARNING, no entry stored in dbm for [ENSG00000285964.1]
WARNING, no entry stored in dbm for [ENSG00000259673.6]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000260276.2]
WARNING, no entry stored in dbm for [ENSG00000225465.10]
WARNING, no entry stored in dbm for [ENSG00000270255.1]
WARNING, no entry stored in dbm for [ENSG00000245322.7]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000230368.2]
WARNING, no entry stored in dbm for [ENSG00000228742.11]
WARNING, no entry stored in dbm for [ENSG00000179523.5]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000250091.3]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000261751.1]
WARNING, no entry stored in dbm for [ENSG00000100058.12]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000283805.1]
WARNING, no entry stored in dbm for [ENSG00000215146.5]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000236794.5]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000236794.5]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000251066.1]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000163016.10]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000275953.1]
WARNING, no entry stored in dbm for [ENSG00000233290.3]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000287708.1]
WARNING, no entry stored in dbm for [ENSG00000231113.2]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000248449.2]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000239315.4]
WARNING, no entry stored in dbm for [ENSG00000214999.3]
WARNING, no entry stored in dbm for [ENSG00000288075.1]
WARNING, no entry stored in dbm for [ENSG00000180764.13]
WARNING, no entry stored in dbm for [ENSG00000249741.2]
WARNING, no entry stored in dbm for [ENSG00000231747.1]
WARNING, no entry stored in dbm for [ENSG00000228375.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000224152.1]
WARNING, no entry stored in dbm for [ENSG00000277283.1]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
* STAR-Fusion complete. See output: /tmp/nxf.eM4XzRXFR2/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)