Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/ffffc52e870dc0f58fc5a263df09b4/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/ed5910e1be844a5e5435b8a041af53/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/b5e5aa81766ed637c0fe06490d4bff/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/ed5910e1be844a5e5435b8a041af53/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/b5e5aa81766ed637c0fe06490d4bff/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.QylaTwlNTQ/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary
-sample contains 267915314 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir  -J /tmp/nxf.QylaTwlNTQ/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.QylaTwlNTQ/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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-building interval tree based on /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[2530000], rate=33000.00/min 
[2540000], rate=33037.07/min 
[2550000], rate=33081.08/min 
[2560000], rate=33124.87/min 
[2570000], rate=33175.56/min 
[2580000], rate=33226.01/min 
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[2600000], rate=33290.65/min 
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[2620000], rate=33333.33/min 
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[2660000], rate=33480.18/min 
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[2680000], rate=33555.93/min 
[2690000], rate=33590.01/min 
[2700000], rate=33637.87/min 
[2710000], rate=33671.57/min 
-building interval tree based on /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=18750.00/min 
[20000], rate=19047.62/min 
[30000], rate=20930.23/min 
[40000], rate=21238.94/min 
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[2030000], rate=28517.91/min 
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[2580000], rate=32364.62/min 
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[2680000], rate=33202.56/min 
[2690000], rate=33285.21/min 
[2700000], rate=33381.41/min 
[2710000], rate=33463.68/min 
-building interval tree based on /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=54545.45/min 
[20000], rate=60000.00/min 
[30000], rate=56250.00/min 
[40000], rate=58536.59/min 
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[100000], rate=72289.16/min 
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[2790000], rate=41818.64/min 
[2800000], rate=41905.71/min 
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[3860000], rate=37014.54/min 
[3870000], rate=37051.22/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
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 3962264.15 reads per min processed...  
 3950310.56 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.QylaTwlNTQ/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -2799738.227545
EM: Round [1] log likelihood: -2799307.021988
EM: Round [2] log likelihood: -2799149.642167
EM: Round [3] log likelihood: -2799076.103930
EM: Round [4] log likelihood: -2799037.496307
EM: Round [5] log likelihood: -2799015.734355
EM: Round [6] log likelihood: -2799002.767247
EM: Round [7] log likelihood: -2798994.638079
EM: Round [8] log likelihood: -2798989.289267
EM: Round [9] log likelihood: -2798985.607386
EM: Round [10] log likelihood: -2798982.968221
EM: Round [11] log likelihood: -2798981.008993
EM: Round [12] log likelihood: -2798979.510718
EM: Round [13] log likelihood: -2798978.336003
EM: Round [14] log likelihood: -2798977.395377
EM: Round [15] log likelihood: -2798976.628549
EM: Round [16] log likelihood: -2798975.993645
EM: Round [17] log likelihood: -2798975.460806
EM: Round [18] log likelihood: -2798975.008256
EM: Round [19] log likelihood: -2798974.619801
EM: Round [20] log likelihood: -2798974.283188
EM: Round [21] log likelihood: -2798973.989007
EM: Round [22] log likelihood: -2798973.729932
EM: Round [23] log likelihood: -2798973.500191
EM: Round [24] log likelihood: -2798973.295182
EM: Round [25] log likelihood: -2798973.111198
EM: Round [26] log likelihood: -2798972.945226
EM: Round [27] log likelihood: -2798972.794790
EM: Round [28] log likelihood: -2798972.657844
EM: Round [29] log likelihood: -2798972.532678
EM: Round [30] log likelihood: -2798972.417856
EM: Round [31] log likelihood: -2798972.312164
EM: Round [32] log likelihood: -2798972.214566
EM: Round [33] log likelihood: -2798972.124176
EM: Round [34] log likelihood: -2798972.040231
EM: Round [35] log likelihood: -2798971.962070
EM: Round [36] log likelihood: -2798971.889118
EM: Round [37] log likelihood: -2798971.820872
EM: Round [38] log likelihood: -2798971.756894
EM: Round [39] log likelihood: -2798971.696794
EM: Round [40] log likelihood: -2798971.640231
EM: Round [41] log likelihood: -2798971.586901
EM: Round [42] log likelihood: -2798971.536533
EM: Round [43] log likelihood: -2798971.488888
EM: Round [44] log likelihood: -2798971.443750
EM: Round [45] log likelihood: -2798971.400925
EM: Round [46] log likelihood: -2798971.360239
EM: Round [47] log likelihood: -2798971.321537
EM: Round [48] log likelihood: -2798971.284676
EM: Round [49] log likelihood: -2798971.249527
EM: Round [50] log likelihood: -2798971.215975
EM: Round [51] log likelihood: -2798971.183914
EM: Round [52] log likelihood: -2798971.153247
EM: Round [53] log likelihood: -2798971.123885
EM: Round [54] log likelihood: -2798971.095748
EM: Round [55] log likelihood: -2798971.068761
EM: Round [56] log likelihood: -2798971.042856
EM: Round [57] log likelihood: -2798971.017972
EM: Round [58] log likelihood: -2798970.994049
EM: Round [59] log likelihood: -2798970.971034
EM: Round [60] log likelihood: -2798970.948877
EM: Round [61] log likelihood: -2798970.927534
EM: Round [62] log likelihood: -2798970.906961
EM: Round [63] log likelihood: -2798970.887118
EM: Round [64] log likelihood: -2798970.867969
EM: Round [65] log likelihood: -2798970.849479
EM: Round [66] log likelihood: -2798970.831617
EM: Round [67] log likelihood: -2798970.814351
EM: Round [68] log likelihood: -2798970.797655
EM: Round [69] log likelihood: -2798970.781501
EM: Round [70] log likelihood: -2798970.765864
EM: Round [71] log likelihood: -2798970.750723
EM: Round [72] log likelihood: -2798970.736054
EM: Round [73] log likelihood: -2798970.721838
EM: Round [74] log likelihood: -2798970.708054
EM: Round [75] log likelihood: -2798970.694684
EM: Round [76] log likelihood: -2798970.681711
EM: Round [77] log likelihood: -2798970.669120
EM: Round [78] log likelihood: -2798970.656893
EM: Round [79] log likelihood: -2798970.645017
EM: Round [80] log likelihood: -2798970.633478
EM: Round [81] log likelihood: -2798970.622262
EM: Round [82] log likelihood: -2798970.611357
EM: Round [83] log likelihood: -2798970.600752
EM: Round [84] log likelihood: -2798970.590434
EM: Round [85] log likelihood: -2798970.580393
EM: Round [86] log likelihood: -2798970.570620
EM: Round [87] log likelihood: -2798970.561103
EM: Round [88] log likelihood: -2798970.551834
EM: Round [89] log likelihood: -2798970.542805
EM: Round [90] log likelihood: -2798970.534006
EM: Round [91] log likelihood: -2798970.525429
EM: Round [92] log likelihood: -2798970.517068
EM: Round [93] log likelihood: -2798970.508914
EM: Round [94] log likelihood: -2798970.500960
EM: Round [95] log likelihood: -2798970.493200
EM: Round [96] log likelihood: -2798970.485628
EM: Round [97] log likelihood: -2798970.478237
EM: Round [98] log likelihood: -2798970.471021
EM: Round [99] log likelihood: -2798970.463975
EM: Round [100] log likelihood: -2798970.457093
EM: Round [101] log likelihood: -2798970.450370
EM: Round [102] log likelihood: -2798970.443802
EM: Round [103] log likelihood: -2798970.437382
EM: Round [104] log likelihood: -2798970.431108
EM: Round [105] log likelihood: -2798970.424974
EM: Round [106] log likelihood: -2798970.418976
EM: Round [107] log likelihood: -2798970.413110
EM: Round [108] log likelihood: -2798970.407372
EM: Round [109] log likelihood: -2798970.401758
EM: Round [110] log likelihood: -2798970.396266
EM: Round [111] log likelihood: -2798970.390890
EM: Round [112] log likelihood: -2798970.385629
EM: Round [113] log likelihood: -2798970.380478
EM: Round [114] log likelihood: -2798970.375435
EM: Round [115] log likelihood: -2798970.370497
EM: Round [116] log likelihood: -2798970.365660
EM: Round [117] log likelihood: -2798970.360922
EM: Round [118] log likelihood: -2798970.356280
EM: Round [119] log likelihood: -2798970.351733
EM: Round [120] log likelihood: -2798970.347276
EM: Round [121] log likelihood: -2798970.342908
EM: Round [122] log likelihood: -2798970.338626
EM: Round [123] log likelihood: -2798970.334429
EM: Round [124] log likelihood: -2798970.330314
EM: Round [125] log likelihood: -2798970.326278
EM: Round [126] log likelihood: -2798970.322321
EM: Round [127] log likelihood: -2798970.318439
EM: Round [128] log likelihood: -2798970.314631
EM: Round [129] log likelihood: -2798970.310896
EM: Round [130] log likelihood: -2798970.307231
EM: Round [131] log likelihood: -2798970.303634
EM: Round [132] log likelihood: -2798970.300105
EM: Round [133] log likelihood: -2798970.296641
EM: Round [134] log likelihood: -2798970.293240
EM: Round [135] log likelihood: -2798970.289902
EM: Round [136] log likelihood: -2798970.286625
EM: Round [137] log likelihood: -2798970.283407
EM: Round [138] log likelihood: -2798970.280247
EM: Round [139] log likelihood: -2798970.277144
EM: Round [140] log likelihood: -2798970.274097
EM: Round [141] log likelihood: -2798970.271103
EM: Round [142] log likelihood: -2798970.268162
EM: Round [143] log likelihood: -2798970.265273
EM: Round [144] log likelihood: -2798970.262435
EM: Round [145] log likelihood: -2798970.259645
EM: Round [146] log likelihood: -2798970.256905
EM: Round [147] log likelihood: -2798970.254211
EM: Round [148] log likelihood: -2798970.251564
EM: Round [149] log likelihood: -2798970.248962
EM: Round [150] log likelihood: -2798970.246404
EM: Round [151] log likelihood: -2798970.243890
EM: Round [152] log likelihood: -2798970.241417
EM: Round [153] log likelihood: -2798970.238987
EM: Round [154] log likelihood: -2798970.236597
EM: Round [155] log likelihood: -2798970.234247
EM: Round [156] log likelihood: -2798970.231936
EM: Round [157] log likelihood: -2798970.229663
EM: Round [158] log likelihood: -2798970.227427
EM: Round [159] log likelihood: -2798970.225228
EM: Round [160] log likelihood: -2798970.223065
EM: Round [161] log likelihood: -2798970.220936
EM: Round [162] log likelihood: -2798970.218843
EM: Round [163] log likelihood: -2798970.216783
EM: Round [164] log likelihood: -2798970.214756
EM: Round [165] log likelihood: -2798970.212762
EM: Round [166] log likelihood: -2798970.210799
EM: Round [167] log likelihood: -2798970.208868
EM: Round [168] log likelihood: -2798970.206967
EM: Round [169] log likelihood: -2798970.205096
EM: Round [170] log likelihood: -2798970.203254
EM: Round [171] log likelihood: -2798970.201441
EM: Round [172] log likelihood: -2798970.199657
EM: Round [173] log likelihood: -2798970.197900
EM: Round [174] log likelihood: -2798970.196171
EM: Round [175] log likelihood: -2798970.194468
EM: Round [176] log likelihood: -2798970.192791
EM: Round [177] log likelihood: -2798970.191141
EM: Round [178] log likelihood: -2798970.189515
EM: Round [179] log likelihood: -2798970.187914
EM: Round [180] log likelihood: -2798970.186337
EM: Round [181] log likelihood: -2798970.184785
EM: Round [182] log likelihood: -2798970.183255
EM: Round [183] log likelihood: -2798970.181749
EM: Round [184] log likelihood: -2798970.180265
EM: Round [185] log likelihood: -2798970.178804
EM: Round [186] log likelihood: -2798970.177364
EM: Round [187] log likelihood: -2798970.175946
EM: Round [188] log likelihood: -2798970.174549
EM: Round [189] log likelihood: -2798970.173172
EM: Round [190] log likelihood: -2798970.171815
EM: Round [191] log likelihood: -2798970.170479
EM: Round [192] log likelihood: -2798970.169162
EM: Round [193] log likelihood: -2798970.167864
EM: Round [194] log likelihood: -2798970.166586
EM: Round [195] log likelihood: -2798970.165326
EM: Round [196] log likelihood: -2798970.164084
EM: Round [197] log likelihood: -2798970.162860
EM: Round [198] log likelihood: -2798970.161653
EM: Round [199] log likelihood: -2798970.160464
EM: Round [200] log likelihood: -2798970.159292
EM: Round [201] log likelihood: -2798970.158137
EM: Round [202] log likelihood: -2798970.156998
EM: Round [203] log likelihood: -2798970.155875
EM: Round [204] log likelihood: -2798970.154769
EM: Round [205] log likelihood: -2798970.153678
EM: Round [206] log likelihood: -2798970.152602
EM: Round [207] log likelihood: -2798970.151541
EM: Round [208] log likelihood: -2798970.150496
EM: Round [209] log likelihood: -2798970.149465
EM: Round [210] log likelihood: -2798970.148448
EM: Round [211] log likelihood: -2798970.147445
EM: Round [212] log likelihood: -2798970.146457
EM: Round [213] log likelihood: -2798970.145482
EM: Round [214] log likelihood: -2798970.144521
EM: Round [215] log likelihood: -2798970.143573
EM: Round [216] log likelihood: -2798970.142637
EM: Round [217] log likelihood: -2798970.141715
EM: Round [218] log likelihood: -2798970.140806
EM: Round [219] log likelihood: -2798970.139908
EM: Round [220] log likelihood: -2798970.139023
EM: Round [221] log likelihood: -2798970.138151
EM: Round [222] log likelihood: -2798970.137289
EM: Round [223] log likelihood: -2798970.136440
EM: Round [224] log likelihood: -2798970.135602
EM: Round [225] log likelihood: -2798970.134775
EM: Round [226] log likelihood: -2798970.133960
EM: Round [227] log likelihood: -2798970.133155
EM: Round [228] log likelihood: -2798970.132362
EM: Round [229] log likelihood: -2798970.131578
EM: Round [230] log likelihood: -2798970.130806
EM: Round [231] log likelihood: -2798970.130043
EM: Round [232] log likelihood: -2798970.129291
EM: Round [233] log likelihood: -2798970.128548
EM: Round [234] log likelihood: -2798970.127816
EM: Round [235] log likelihood: -2798970.127093
EM: Round [236] log likelihood: -2798970.126380
EM: Round [237] log likelihood: -2798970.125676
EM: Round [238] log likelihood: -2798970.124981
EM: Round [239] log likelihood: -2798970.124295
EM: Round [240] log likelihood: -2798970.123618
EM: Round [241] log likelihood: -2798970.122951
EM: Round [242] log likelihood: -2798970.122291
EM: Round [243] log likelihood: -2798970.121641
EM: Round [244] log likelihood: -2798970.120998
EM: Round [245] log likelihood: -2798970.120364
EM: Round [246] log likelihood: -2798970.119739
EM: Round [247] log likelihood: -2798970.119121
EM: Round [248] log likelihood: -2798970.118511
EM: Round [249] log likelihood: -2798970.117909
EM: Round [250] log likelihood: -2798970.117315
EM: Round [251] log likelihood: -2798970.116729
EM: Round [252] log likelihood: -2798970.116149
EM: Round [253] log likelihood: -2798970.115578
EM: Round [254] log likelihood: -2798970.115013
EM: Round [255] log likelihood: -2798970.114456
EM: Round [256] log likelihood: -2798970.113906
EM: Round [257] log likelihood: -2798970.113362
EM: Round [258] log likelihood: -2798970.112826
EM: Round [259] log likelihood: -2798970.112296
EM: Round [260] log likelihood: -2798970.111773
EM: Round [261] log likelihood: -2798970.111257
EM: Round [262] log likelihood: -2798970.110747
EM: Round [263] log likelihood: -2798970.110243
EM: Round [264] log likelihood: -2798970.109746
EM: Round [265] log likelihood: -2798970.109255
EM: Round [266] log likelihood: -2798970.108770
EM: Round [267] log likelihood: -2798970.108291
EM: Round [268] log likelihood: -2798970.107818
EM: Round [269] log likelihood: -2798970.107351
EM: Round [270] log likelihood: -2798970.106889
EM: Round [271] log likelihood: -2798970.106434
EM: Round [272] log likelihood: -2798970.105983
EM: Round [273] log likelihood: -2798970.105539
EM: Round [274] log likelihood: -2798970.105100
EM: Round [275] log likelihood: -2798970.104666
EM: Round [276] log likelihood: -2798970.104238
EM: Round [277] log likelihood: -2798970.103815
EM: Round [278] log likelihood: -2798970.103397
EM: Round [279] log likelihood: -2798970.102984
EM: Round [280] log likelihood: -2798970.102576
EM: Round [281] log likelihood: -2798970.102173
EM: Round [282] log likelihood: -2798970.101775
EM: Round [283] log likelihood: -2798970.101382
EM: Round [284] log likelihood: -2798970.100993
EM: Round [285] log likelihood: -2798970.100609
EM: Round [286] log likelihood: -2798970.100230
EM: Round [287] log likelihood: -2798970.099856
EM: Round [288] log likelihood: -2798970.099486
EM: Round [289] log likelihood: -2798970.099120
EM: Round [290] log likelihood: -2798970.098759
EM: Round [291] log likelihood: -2798970.098402
EM: Round [292] log likelihood: -2798970.098049
EM: Round [293] log likelihood: -2798970.097701
EM: Round [294] log likelihood: -2798970.097356
EM: Round [295] log likelihood: -2798970.097016
EM: Round [296] log likelihood: -2798970.096680
EM: Round [297] log likelihood: -2798970.096348
EM: Round [298] log likelihood: -2798970.096019
EM: Round [299] log likelihood: -2798970.095695
EM: Round [300] log likelihood: -2798970.095375
EM: Round [301] log likelihood: -2798970.095058
EM: Round [302] log likelihood: -2798970.094745
EM: Round [303] log likelihood: -2798970.094436
EM: Round [304] log likelihood: -2798970.094130
EM: Round [305] log likelihood: -2798970.093828
EM: Round [306] log likelihood: -2798970.093529
EM: Round [307] log likelihood: -2798970.093234
EM: Round [308] log likelihood: -2798970.092942
EM: Round [309] log likelihood: -2798970.092654
EM: Round [310] log likelihood: -2798970.092369
EM: Round [311] log likelihood: -2798970.092088
EM: Round [312] log likelihood: -2798970.091810
EM: Round [313] log likelihood: -2798970.091534
EM: Round [314] log likelihood: -2798970.091263
EM: Round [315] log likelihood: -2798970.090994
EM: Round [316] log likelihood: -2798970.090728
EM: Round [317] log likelihood: -2798970.090466
EM: Round [318] log likelihood: -2798970.090206
EM: Round [319] log likelihood: -2798970.089950
EM: Round [320] log likelihood: -2798970.089696
EM: Round [321] log likelihood: -2798970.089446
EM: Round [322] log likelihood: -2798970.089198
EM: Round [323] log likelihood: -2798970.088953
EM: Round [324] log likelihood: -2798970.088711
EM: Round [325] log likelihood: -2798970.088472
EM: Round [326] log likelihood: -2798970.088235
EM: Round [327] log likelihood: -2798970.088001
EM: Round [328] log likelihood: -2798970.087770
EM: Round [329] log likelihood: -2798970.087541
EM: Round [330] log likelihood: -2798970.087315
EM: Round [331] log likelihood: -2798970.087092
EM: Round [332] log likelihood: -2798970.086871
EM: Round [333] log likelihood: -2798970.086653
EM: Round [334] log likelihood: -2798970.086437
EM: Round [335] log likelihood: -2798970.086223
EM: Round [336] log likelihood: -2798970.086012
EM: Round [337] log likelihood: -2798970.085804
EM: Round [338] log likelihood: -2798970.085597
EM: Round [339] log likelihood: -2798970.085393
EM: Round [340] log likelihood: -2798970.085192
EM: Round [341] log likelihood: -2798970.084992
EM: Round [342] log likelihood: -2798970.084795
EM: Round [343] log likelihood: -2798970.084600
EM: Round [344] log likelihood: -2798970.084407
EM: Round [345] log likelihood: -2798970.084217
EM: Round [346] log likelihood: -2798970.084028
EM: Round [347] log likelihood: -2798970.083842
EM: Round [348] log likelihood: -2798970.083658
EM: Round [349] log likelihood: -2798970.083475
EM: Round [350] log likelihood: -2798970.083295
EM: Round [351] log likelihood: -2798970.083117
EM: Round [352] log likelihood: -2798970.082941
EM: Round [353] log likelihood: -2798970.082767
EM: Round [354] log likelihood: -2798970.082594
EM: Round [355] log likelihood: -2798970.082424
EM: Round [356] log likelihood: -2798970.082255
EM: Round [357] log likelihood: -2798970.082089
EM: Round [358] log likelihood: -2798970.081924
EM: Round [359] log likelihood: -2798970.081761
EM: Round [360] log likelihood: -2798970.081600
EM: Round [361] log likelihood: -2798970.081440
EM: Round [362] log likelihood: -2798970.081283
EM: Round [363] log likelihood: -2798970.081127
EM: Round [364] log likelihood: -2798970.080973
EM: Round [365] log likelihood: -2798970.080820
EM: Round [366] log likelihood: -2798970.080669
EM: Round [367] log likelihood: -2798970.080520
EM: Round [368] log likelihood: -2798970.080373
EM: Round [369] log likelihood: -2798970.080227
EM: Round [370] log likelihood: -2798970.080082
EM: Round [371] log likelihood: -2798970.079940
EM: Round [372] log likelihood: -2798970.079798
EM: Round [373] log likelihood: -2798970.079659
EM: Round [374] log likelihood: -2798970.079521
EM: Round [375] log likelihood: -2798970.079384
EM: Round [376] log likelihood: -2798970.079249
EM: Round [377] log likelihood: -2798970.079115
EM: Round [378] log likelihood: -2798970.078983
EM: Round [379] log likelihood: -2798970.078852
EM: Round [380] log likelihood: -2798970.078723
EM: Round [381] log likelihood: -2798970.078595
EM: Round [382] log likelihood: -2798970.078469
EM: Round [383] log likelihood: -2798970.078343
EM: Round [384] log likelihood: -2798970.078220
EM: Round [385] log likelihood: -2798970.078097
EM: Round [386] log likelihood: -2798970.077976
EM: Round [387] log likelihood: -2798970.077856
EM: Round [388] log likelihood: -2798970.077738
EM: Round [389] log likelihood: -2798970.077620
EM: Round [390] log likelihood: -2798970.077504
EM: Round [391] log likelihood: -2798970.077390
EM: Round [392] log likelihood: -2798970.077276
EM: Round [393] log likelihood: -2798970.077164
EM: Round [394] log likelihood: -2798970.077053
EM: Round [395] log likelihood: -2798970.076943
EM: Round [396] log likelihood: -2798970.076834
EM: Round [397] log likelihood: -2798970.076726
EM: Round [398] log likelihood: -2798970.076620
EM: Round [399] log likelihood: -2798970.076515
EM: Round [400] log likelihood: -2798970.076411
EM: Round [401] log likelihood: -2798970.076308
EM: Round [402] log likelihood: -2798970.076206
EM: Round [403] log likelihood: -2798970.076105
EM: Round [404] log likelihood: -2798970.076005
EM: Stopping iterations at round 404 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -2798105.897809
EM: Round [1] log likelihood: -2797743.755472
EM: Round [2] log likelihood: -2797615.430191
EM: Round [3] log likelihood: -2797556.538205
EM: Round [4] log likelihood: -2797525.963154
EM: Round [5] log likelihood: -2797508.865311
EM: Round [6] log likelihood: -2797498.756035
EM: Round [7] log likelihood: -2797492.479574
EM: Round [8] log likelihood: -2797488.401906
EM: Round [9] log likelihood: -2797485.639398
EM: Round [10] log likelihood: -2797483.696361
EM: Round [11] log likelihood: -2797482.284525
EM: Round [12] log likelihood: -2797481.229851
EM: Round [13] log likelihood: -2797480.423216
EM: Round [14] log likelihood: -2797479.793690
EM: Round [15] log likelihood: -2797479.293649
EM: Round [16] log likelihood: -2797478.890201
EM: Round [17] log likelihood: -2797478.560071
EM: Round [18] log likelihood: -2797478.286456
EM: Round [19] log likelihood: -2797478.057004
EM: Round [20] log likelihood: -2797477.862502
EM: Round [21] log likelihood: -2797477.695979
EM: Round [22] log likelihood: -2797477.552101
EM: Round [23] log likelihood: -2797477.426736
EM: Round [24] log likelihood: -2797477.316650
EM: Round [25] log likelihood: -2797477.219290
EM: Round [26] log likelihood: -2797477.132614
EM: Round [27] log likelihood: -2797477.054980
EM: Round [28] log likelihood: -2797476.985054
EM: Round [29] log likelihood: -2797476.921742
EM: Round [30] log likelihood: -2797476.864139
EM: Round [31] log likelihood: -2797476.811496
EM: Round [32] log likelihood: -2797476.763181
EM: Round [33] log likelihood: -2797476.718663
EM: Round [34] log likelihood: -2797476.677492
EM: Round [35] log likelihood: -2797476.639282
EM: Round [36] log likelihood: -2797476.603702
EM: Round [37] log likelihood: -2797476.570469
EM: Round [38] log likelihood: -2797476.539335
EM: Round [39] log likelihood: -2797476.510086
EM: Round [40] log likelihood: -2797476.482534
EM: Round [41] log likelihood: -2797476.456516
EM: Round [42] log likelihood: -2797476.431886
EM: Round [43] log likelihood: -2797476.408519
EM: Round [44] log likelihood: -2797476.386302
EM: Round [45] log likelihood: -2797476.365135
EM: Round [46] log likelihood: -2797476.344929
EM: Round [47] log likelihood: -2797476.325605
EM: Round [48] log likelihood: -2797476.307094
EM: Round [49] log likelihood: -2797476.289331
EM: Round [50] log likelihood: -2797476.272261
EM: Round [51] log likelihood: -2797476.255833
EM: Round [52] log likelihood: -2797476.240001
EM: Round [53] log likelihood: -2797476.224723
EM: Round [54] log likelihood: -2797476.209962
EM: Round [55] log likelihood: -2797476.195686
EM: Round [56] log likelihood: -2797476.181862
EM: Round [57] log likelihood: -2797476.168463
EM: Round [58] log likelihood: -2797476.155464
EM: Round [59] log likelihood: -2797476.142842
EM: Round [60] log likelihood: -2797476.130576
EM: Round [61] log likelihood: -2797476.118646
EM: Round [62] log likelihood: -2797476.107034
EM: Round [63] log likelihood: -2797476.095725
EM: Round [64] log likelihood: -2797476.084703
EM: Round [65] log likelihood: -2797476.073954
EM: Round [66] log likelihood: -2797476.063467
EM: Round [67] log likelihood: -2797476.053229
EM: Round [68] log likelihood: -2797476.043229
EM: Round [69] log likelihood: -2797476.033457
EM: Round [70] log likelihood: -2797476.023903
EM: Round [71] log likelihood: -2797476.014560
EM: Round [72] log likelihood: -2797476.005419
EM: Round [73] log likelihood: -2797475.996472
EM: Round [74] log likelihood: -2797475.987712
EM: Round [75] log likelihood: -2797475.979133
EM: Round [76] log likelihood: -2797475.970728
EM: Round [77] log likelihood: -2797475.962491
EM: Round [78] log likelihood: -2797475.954418
EM: Round [79] log likelihood: -2797475.946502
EM: Round [80] log likelihood: -2797475.938738
EM: Round [81] log likelihood: -2797475.931123
EM: Round [82] log likelihood: -2797475.923652
EM: Round [83] log likelihood: -2797475.916320
EM: Round [84] log likelihood: -2797475.909123
EM: Round [85] log likelihood: -2797475.902059
EM: Round [86] log likelihood: -2797475.895122
EM: Round [87] log likelihood: -2797475.888311
EM: Round [88] log likelihood: -2797475.881621
EM: Round [89] log likelihood: -2797475.875049
EM: Round [90] log likelihood: -2797475.868593
EM: Round [91] log likelihood: -2797475.862250
EM: Round [92] log likelihood: -2797475.856017
EM: Round [93] log likelihood: -2797475.849890
EM: Round [94] log likelihood: -2797475.843869
EM: Round [95] log likelihood: -2797475.837950
EM: Round [96] log likelihood: -2797475.832131
EM: Round [97] log likelihood: -2797475.826410
EM: Round [98] log likelihood: -2797475.820784
EM: Round [99] log likelihood: -2797475.815252
EM: Round [100] log likelihood: -2797475.809811
EM: Round [101] log likelihood: -2797475.804460
EM: Round [102] log likelihood: -2797475.799197
EM: Round [103] log likelihood: -2797475.794020
EM: Round [104] log likelihood: -2797475.788926
EM: Round [105] log likelihood: -2797475.783915
EM: Round [106] log likelihood: -2797475.778985
EM: Round [107] log likelihood: -2797475.774134
EM: Round [108] log likelihood: -2797475.769361
EM: Round [109] log likelihood: -2797475.764663
EM: Round [110] log likelihood: -2797475.760040
EM: Round [111] log likelihood: -2797475.755491
EM: Round [112] log likelihood: -2797475.751013
EM: Round [113] log likelihood: -2797475.746605
EM: Round [114] log likelihood: -2797475.742267
EM: Round [115] log likelihood: -2797475.737996
EM: Round [116] log likelihood: -2797475.733792
EM: Round [117] log likelihood: -2797475.729653
EM: Round [118] log likelihood: -2797475.725578
EM: Round [119] log likelihood: -2797475.721566
EM: Round [120] log likelihood: -2797475.717616
EM: Round [121] log likelihood: -2797475.713727
EM: Round [122] log likelihood: -2797475.709897
EM: Round [123] log likelihood: -2797475.706126
EM: Round [124] log likelihood: -2797475.702412
EM: Round [125] log likelihood: -2797475.698755
EM: Round [126] log likelihood: -2797475.695154
EM: Round [127] log likelihood: -2797475.691606
EM: Round [128] log likelihood: -2797475.688113
EM: Round [129] log likelihood: -2797475.684672
EM: Round [130] log likelihood: -2797475.681283
EM: Round [131] log likelihood: -2797475.677945
EM: Round [132] log likelihood: -2797475.674657
EM: Round [133] log likelihood: -2797475.671418
EM: Round [134] log likelihood: -2797475.668227
EM: Round [135] log likelihood: -2797475.665084
EM: Round [136] log likelihood: -2797475.661988
EM: Round [137] log likelihood: -2797475.658938
EM: Round [138] log likelihood: -2797475.655932
EM: Round [139] log likelihood: -2797475.652971
EM: Round [140] log likelihood: -2797475.650054
EM: Round [141] log likelihood: -2797475.647180
EM: Round [142] log likelihood: -2797475.644348
EM: Round [143] log likelihood: -2797475.641558
EM: Round [144] log likelihood: -2797475.638808
EM: Round [145] log likelihood: -2797475.636099
EM: Round [146] log likelihood: -2797475.633429
EM: Round [147] log likelihood: -2797475.630798
EM: Round [148] log likelihood: -2797475.628206
EM: Round [149] log likelihood: -2797475.625651
EM: Round [150] log likelihood: -2797475.623133
EM: Round [151] log likelihood: -2797475.620651
EM: Round [152] log likelihood: -2797475.618205
EM: Round [153] log likelihood: -2797475.615795
EM: Round [154] log likelihood: -2797475.613419
EM: Round [155] log likelihood: -2797475.611078
EM: Round [156] log likelihood: -2797475.608770
EM: Round [157] log likelihood: -2797475.606495
EM: Round [158] log likelihood: -2797475.604253
EM: Round [159] log likelihood: -2797475.602043
EM: Round [160] log likelihood: -2797475.599864
EM: Round [161] log likelihood: -2797475.597716
EM: Round [162] log likelihood: -2797475.595599
EM: Round [163] log likelihood: -2797475.593512
EM: Round [164] log likelihood: -2797475.591454
EM: Round [165] log likelihood: -2797475.589426
EM: Round [166] log likelihood: -2797475.587426
EM: Round [167] log likelihood: -2797475.585455
EM: Round [168] log likelihood: -2797475.583511
EM: Round [169] log likelihood: -2797475.581595
EM: Round [170] log likelihood: -2797475.579705
EM: Round [171] log likelihood: -2797475.577842
EM: Round [172] log likelihood: -2797475.576005
EM: Round [173] log likelihood: -2797475.574194
EM: Round [174] log likelihood: -2797475.572408
EM: Round [175] log likelihood: -2797475.570647
EM: Round [176] log likelihood: -2797475.568911
EM: Round [177] log likelihood: -2797475.567198
EM: Round [178] log likelihood: -2797475.565510
EM: Round [179] log likelihood: -2797475.563844
EM: Round [180] log likelihood: -2797475.562202
EM: Round [181] log likelihood: -2797475.560583
EM: Round [182] log likelihood: -2797475.558986
EM: Round [183] log likelihood: -2797475.557411
EM: Round [184] log likelihood: -2797475.555857
EM: Round [185] log likelihood: -2797475.554325
EM: Round [186] log likelihood: -2797475.552814
EM: Round [187] log likelihood: -2797475.551324
EM: Round [188] log likelihood: -2797475.549854
EM: Round [189] log likelihood: -2797475.548404
EM: Round [190] log likelihood: -2797475.546973
EM: Round [191] log likelihood: -2797475.545563
EM: Round [192] log likelihood: -2797475.544171
EM: Round [193] log likelihood: -2797475.542799
EM: Round [194] log likelihood: -2797475.541445
EM: Round [195] log likelihood: -2797475.540109
EM: Round [196] log likelihood: -2797475.538791
EM: Round [197] log likelihood: -2797475.537492
EM: Round [198] log likelihood: -2797475.536209
EM: Round [199] log likelihood: -2797475.534944
EM: Round [200] log likelihood: -2797475.533696
EM: Round [201] log likelihood: -2797475.532465
EM: Round [202] log likelihood: -2797475.531250
EM: Round [203] log likelihood: -2797475.530052
EM: Round [204] log likelihood: -2797475.528869
EM: Round [205] log likelihood: -2797475.527702
EM: Round [206] log likelihood: -2797475.526551
EM: Round [207] log likelihood: -2797475.525415
EM: Round [208] log likelihood: -2797475.524295
EM: Round [209] log likelihood: -2797475.523189
EM: Round [210] log likelihood: -2797475.522097
EM: Round [211] log likelihood: -2797475.521021
EM: Round [212] log likelihood: -2797475.519958
EM: Round [213] log likelihood: -2797475.518910
EM: Round [214] log likelihood: -2797475.517875
EM: Round [215] log likelihood: -2797475.516854
EM: Round [216] log likelihood: -2797475.515846
EM: Round [217] log likelihood: -2797475.514851
EM: Round [218] log likelihood: -2797475.513870
EM: Round [219] log likelihood: -2797475.512901
EM: Round [220] log likelihood: -2797475.511945
EM: Round [221] log likelihood: -2797475.511002
EM: Round [222] log likelihood: -2797475.510071
EM: Round [223] log likelihood: -2797475.509152
EM: Round [224] log likelihood: -2797475.508245
EM: Round [225] log likelihood: -2797475.507349
EM: Round [226] log likelihood: -2797475.506465
EM: Round [227] log likelihood: -2797475.505593
EM: Round [228] log likelihood: -2797475.504732
EM: Round [229] log likelihood: -2797475.503882
EM: Round [230] log likelihood: -2797475.503043
EM: Round [231] log likelihood: -2797475.502215
EM: Round [232] log likelihood: -2797475.501397
EM: Round [233] log likelihood: -2797475.500590
EM: Round [234] log likelihood: -2797475.499793
EM: Round [235] log likelihood: -2797475.499007
EM: Round [236] log likelihood: -2797475.498230
EM: Round [237] log likelihood: -2797475.497464
EM: Round [238] log likelihood: -2797475.496707
EM: Round [239] log likelihood: -2797475.495959
EM: Round [240] log likelihood: -2797475.495222
EM: Round [241] log likelihood: -2797475.494493
EM: Round [242] log likelihood: -2797475.493774
EM: Round [243] log likelihood: -2797475.493064
EM: Round [244] log likelihood: -2797475.492363
EM: Round [245] log likelihood: -2797475.491671
EM: Round [246] log likelihood: -2797475.490987
EM: Round [247] log likelihood: -2797475.490312
EM: Round [248] log likelihood: -2797475.489646
EM: Round [249] log likelihood: -2797475.488988
EM: Round [250] log likelihood: -2797475.488338
EM: Round [251] log likelihood: -2797475.487696
EM: Round [252] log likelihood: -2797475.487063
EM: Round [253] log likelihood: -2797475.486437
EM: Round [254] log likelihood: -2797475.485819
EM: Round [255] log likelihood: -2797475.485209
EM: Round [256] log likelihood: -2797475.484606
EM: Round [257] log likelihood: -2797475.484011
EM: Round [258] log likelihood: -2797475.483423
EM: Round [259] log likelihood: -2797475.482843
EM: Round [260] log likelihood: -2797475.482269
EM: Round [261] log likelihood: -2797475.481703
EM: Round [262] log likelihood: -2797475.481144
EM: Round [263] log likelihood: -2797475.480591
EM: Round [264] log likelihood: -2797475.480046
EM: Round [265] log likelihood: -2797475.479507
EM: Round [266] log likelihood: -2797475.478975
EM: Round [267] log likelihood: -2797475.478449
EM: Round [268] log likelihood: -2797475.477929
EM: Round [269] log likelihood: -2797475.477417
EM: Round [270] log likelihood: -2797475.476910
EM: Round [271] log likelihood: -2797475.476409
EM: Round [272] log likelihood: -2797475.475915
EM: Round [273] log likelihood: -2797475.475426
EM: Round [274] log likelihood: -2797475.474944
EM: Round [275] log likelihood: -2797475.474467
EM: Round [276] log likelihood: -2797475.473996
EM: Round [277] log likelihood: -2797475.473531
EM: Round [278] log likelihood: -2797475.473072
EM: Round [279] log likelihood: -2797475.472618
EM: Round [280] log likelihood: -2797475.472169
EM: Round [281] log likelihood: -2797475.471726
EM: Round [282] log likelihood: -2797475.471288
EM: Round [283] log likelihood: -2797475.470855
EM: Round [284] log likelihood: -2797475.470428
EM: Round [285] log likelihood: -2797475.470006
EM: Round [286] log likelihood: -2797475.469589
EM: Round [287] log likelihood: -2797475.469176
EM: Round [288] log likelihood: -2797475.468769
EM: Round [289] log likelihood: -2797475.468367
EM: Round [290] log likelihood: -2797475.467969
EM: Round [291] log likelihood: -2797475.467576
EM: Round [292] log likelihood: -2797475.467188
EM: Round [293] log likelihood: -2797475.466804
EM: Round [294] log likelihood: -2797475.466425
EM: Round [295] log likelihood: -2797475.466050
EM: Round [296] log likelihood: -2797475.465680
EM: Round [297] log likelihood: -2797475.465314
EM: Round [298] log likelihood: -2797475.464953
EM: Round [299] log likelihood: -2797475.464596
EM: Round [300] log likelihood: -2797475.464242
EM: Round [301] log likelihood: -2797475.463894
EM: Round [302] log likelihood: -2797475.463549
EM: Round [303] log likelihood: -2797475.463208
EM: Round [304] log likelihood: -2797475.462871
EM: Round [305] log likelihood: -2797475.462538
EM: Round [306] log likelihood: -2797475.462209
EM: Round [307] log likelihood: -2797475.461884
EM: Round [308] log likelihood: -2797475.461563
EM: Round [309] log likelihood: -2797475.461245
EM: Round [310] log likelihood: -2797475.460932
EM: Round [311] log likelihood: -2797475.460621
EM: Round [312] log likelihood: -2797475.460315
EM: Round [313] log likelihood: -2797475.460012
EM: Round [314] log likelihood: -2797475.459712
EM: Round [315] log likelihood: -2797475.459416
EM: Round [316] log likelihood: -2797475.459123
EM: Round [317] log likelihood: -2797475.458834
EM: Round [318] log likelihood: -2797475.458548
EM: Round [319] log likelihood: -2797475.458265
EM: Round [320] log likelihood: -2797475.457986
EM: Round [321] log likelihood: -2797475.457710
EM: Round [322] log likelihood: -2797475.457437
EM: Round [323] log likelihood: -2797475.457167
EM: Round [324] log likelihood: -2797475.456900
EM: Round [325] log likelihood: -2797475.456636
EM: Round [326] log likelihood: -2797475.456375
EM: Round [327] log likelihood: -2797475.456118
EM: Round [328] log likelihood: -2797475.455863
EM: Round [329] log likelihood: -2797475.455611
EM: Round [330] log likelihood: -2797475.455362
EM: Round [331] log likelihood: -2797475.455115
EM: Round [332] log likelihood: -2797475.454872
EM: Round [333] log likelihood: -2797475.454631
EM: Round [334] log likelihood: -2797475.454393
EM: Round [335] log likelihood: -2797475.454158
EM: Round [336] log likelihood: -2797475.453926
EM: Round [337] log likelihood: -2797475.453696
EM: Round [338] log likelihood: -2797475.453468
EM: Round [339] log likelihood: -2797475.453244
EM: Round [340] log likelihood: -2797475.453021
EM: Round [341] log likelihood: -2797475.452802
EM: Round [342] log likelihood: -2797475.452584
EM: Round [343] log likelihood: -2797475.452369
EM: Round [344] log likelihood: -2797475.452157
EM: Round [345] log likelihood: -2797475.451947
EM: Round [346] log likelihood: -2797475.451739
EM: Round [347] log likelihood: -2797475.451534
EM: Round [348] log likelihood: -2797475.451331
EM: Round [349] log likelihood: -2797475.451130
EM: Round [350] log likelihood: -2797475.450932
EM: Round [351] log likelihood: -2797475.450735
EM: Round [352] log likelihood: -2797475.450541
EM: Round [353] log likelihood: -2797475.450349
EM: Round [354] log likelihood: -2797475.450159
EM: Round [355] log likelihood: -2797475.449971
EM: Round [356] log likelihood: -2797475.449786
EM: Round [357] log likelihood: -2797475.449602
EM: Round [358] log likelihood: -2797475.449421
EM: Round [359] log likelihood: -2797475.449241
EM: Round [360] log likelihood: -2797475.449064
EM: Round [361] log likelihood: -2797475.448888
EM: Round [362] log likelihood: -2797475.448714
EM: Round [363] log likelihood: -2797475.448543
EM: Round [364] log likelihood: -2797475.448373
EM: Round [365] log likelihood: -2797475.448205
EM: Round [366] log likelihood: -2797475.448039
EM: Round [367] log likelihood: -2797475.447874
EM: Round [368] log likelihood: -2797475.447712
EM: Round [369] log likelihood: -2797475.447551
EM: Round [370] log likelihood: -2797475.447392
EM: Round [371] log likelihood: -2797475.447235
EM: Round [372] log likelihood: -2797475.447080
EM: Round [373] log likelihood: -2797475.446926
EM: Round [374] log likelihood: -2797475.446774
EM: Round [375] log likelihood: -2797475.446624
EM: Round [376] log likelihood: -2797475.446475
EM: Round [377] log likelihood: -2797475.446328
EM: Round [378] log likelihood: -2797475.446182
EM: Round [379] log likelihood: -2797475.446038
EM: Round [380] log likelihood: -2797475.445896
EM: Round [381] log likelihood: -2797475.445755
EM: Round [382] log likelihood: -2797475.445616
EM: Round [383] log likelihood: -2797475.445478
EM: Round [384] log likelihood: -2797475.445342
EM: Round [385] log likelihood: -2797475.445207
EM: Round [386] log likelihood: -2797475.445073
EM: Round [387] log likelihood: -2797475.444941
EM: Round [388] log likelihood: -2797475.444811
EM: Round [389] log likelihood: -2797475.444682
EM: Round [390] log likelihood: -2797475.444554
EM: Round [391] log likelihood: -2797475.444428
EM: Round [392] log likelihood: -2797475.444303
EM: Round [393] log likelihood: -2797475.444180
EM: Round [394] log likelihood: -2797475.444057
EM: Round [395] log likelihood: -2797475.443936
EM: Round [396] log likelihood: -2797475.443817
EM: Round [397] log likelihood: -2797475.443698
EM: Round [398] log likelihood: -2797475.443581
EM: Round [399] log likelihood: -2797475.443466
EM: Round [400] log likelihood: -2797475.443351
EM: Round [401] log likelihood: -2797475.443238
EM: Round [402] log likelihood: -2797475.443126
EM: Round [403] log likelihood: -2797475.443015
EM: Round [404] log likelihood: -2797475.442905
EM: Round [405] log likelihood: -2797475.442796
EM: Round [406] log likelihood: -2797475.442689
EM: Round [407] log likelihood: -2797475.442583
EM: Round [408] log likelihood: -2797475.442478
EM: Round [409] log likelihood: -2797475.442374
EM: Round [410] log likelihood: -2797475.442271
EM: Round [411] log likelihood: -2797475.442169
EM: Round [412] log likelihood: -2797475.442068
EM: Round [413] log likelihood: -2797475.441969
EM: Stopping iterations at round 413 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 267915314 > /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir > /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir --annotate /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir
-done, see /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 697, filtered: 4476)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.QylaTwlNTQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.QylaTwlNTQ/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000286472.1]
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WARNING, no entry stored in dbm for [ENSG00000174353.17]
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WARNING, no entry stored in dbm for [ENSG00000249049.1]
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WARNING, no entry stored in dbm for [ENSG00000225342.2]
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WARNING, no entry stored in dbm for [ENSG00000282728.1]
WARNING, no entry stored in dbm for [ENSG00000267108.1]
WARNING, no entry stored in dbm for [ENSG00000231355.1]
WARNING, no entry stored in dbm for [ENSG00000287972.1]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000284999.1]
WARNING, no entry stored in dbm for [ENSG00000228506.2]
WARNING, no entry stored in dbm for [ENSG00000223583.1]
WARNING, no entry stored in dbm for [ENSG00000225891.2]
WARNING, no entry stored in dbm for [ENSG00000276997.4]
WARNING, no entry stored in dbm for [ENSG00000176868.2]
WARNING, no entry stored in dbm for [ENSG00000286109.1]
WARNING, no entry stored in dbm for [ENSG00000229227.8]
WARNING, no entry stored in dbm for [ENSG00000179899.8]
WARNING, no entry stored in dbm for [ENSG00000261334.1]
WARNING, no entry stored in dbm for [ENSG00000232176.1]
WARNING, no entry stored in dbm for [ENSG00000233178.7]
WARNING, no entry stored in dbm for [ENSG00000267336.1]
WARNING, no entry stored in dbm for [ENSG00000258458.8]
WARNING, no entry stored in dbm for [ENSG00000227492.2]
WARNING, no entry stored in dbm for [ENSG00000230224.1]
WARNING, no entry stored in dbm for [ENSG00000230863.3]
WARNING, no entry stored in dbm for [ENSG00000258727.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000285941.1]
WARNING, no entry stored in dbm for [ENSG00000271335.6]
WARNING, no entry stored in dbm for [ENSG00000278383.1]
WARNING, no entry stored in dbm for [ENSG00000215022.7]
WARNING, no entry stored in dbm for [ENSG00000151631.8]
WARNING, no entry stored in dbm for [ENSG00000261222.3]
WARNING, no entry stored in dbm for [ENSG00000275121.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000265798.6]
WARNING, no entry stored in dbm for [ENSG00000265798.6]
WARNING, no entry stored in dbm for [ENSG00000277426.1]
WARNING, no entry stored in dbm for [ENSG00000108958.4]
WARNING, no entry stored in dbm for [ENSG00000279474.1]
WARNING, no entry stored in dbm for [ENSG00000226445.2]
WARNING, no entry stored in dbm for [ENSG00000286103.1]
WARNING, no entry stored in dbm for [ENSG00000248285.1]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000287707.1]
WARNING, no entry stored in dbm for [ENSG00000287879.1]
WARNING, no entry stored in dbm for [ENSG00000266998.1]
WARNING, no entry stored in dbm for [ENSG00000242068.1]
WARNING, no entry stored in dbm for [ENSG00000260293.2]
WARNING, no entry stored in dbm for [ENSG00000176349.11]
WARNING, no entry stored in dbm for [ENSG00000235831.7]
WARNING, no entry stored in dbm for [ENSG00000273328.5]
WARNING, no entry stored in dbm for [ENSG00000249392.1]
WARNING, no entry stored in dbm for [ENSG00000249741.2]
WARNING, no entry stored in dbm for [ENSG00000238018.2]
WARNING, no entry stored in dbm for [ENSG00000284687.1]
WARNING, no entry stored in dbm for [ENSG00000287860.1]
WARNING, no entry stored in dbm for [ENSG00000286836.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000286545.1]
WARNING, no entry stored in dbm for [ENSG00000278577.1]
WARNING, no entry stored in dbm for [ENSG00000282416.1]
WARNING, no entry stored in dbm for [ENSG00000250251.6]
WARNING, no entry stored in dbm for [ENSG00000234686.1]
WARNING, no entry stored in dbm for [ENSG00000274667.1]
WARNING, no entry stored in dbm for [ENSG00000277654.6]
WARNING, no entry stored in dbm for [ENSG00000285852.1]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000234985.2]
WARNING, no entry stored in dbm for [ENSG00000224888.4]
WARNING, no entry stored in dbm for [ENSG00000286035.1]
WARNING, no entry stored in dbm for [ENSG00000284663.1]
WARNING, no entry stored in dbm for [ENSG00000284610.1]
WARNING, no entry stored in dbm for [ENSG00000247765.2]
WARNING, no entry stored in dbm for [ENSG00000258590.5]
WARNING, no entry stored in dbm for [ENSG00000247765.2]
WARNING, no entry stored in dbm for [ENSG00000258590.5]
WARNING, no entry stored in dbm for [ENSG00000239828.7]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000278983.1]
WARNING, no entry stored in dbm for [ENSG00000230291.5]
WARNING, no entry stored in dbm for [ENSG00000267390.1]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000232615.4]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000251131.2]
WARNING, no entry stored in dbm for [ENSG00000259429.5]
WARNING, no entry stored in dbm for [ENSG00000255621.1]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000264790.1]
WARNING, no entry stored in dbm for [ENSG00000278330.1]
WARNING, no entry stored in dbm for [ENSG00000286186.1]
WARNING, no entry stored in dbm for [ENSG00000233862.7]
WARNING, no entry stored in dbm for [ENSG00000272384.1]
WARNING, no entry stored in dbm for [ENSG00000279069.1]
WARNING, no entry stored in dbm for [ENSG00000232347.1]
WARNING, no entry stored in dbm for [ENSG00000229727.7]
WARNING, no entry stored in dbm for [ENSG00000258034.1]
WARNING, no entry stored in dbm for [ENSG00000118976.5]
WARNING, no entry stored in dbm for [ENSG00000272702.1]
WARNING, no entry stored in dbm for [ENSG00000250672.1]
WARNING, no entry stored in dbm for [ENSG00000287166.1]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000268204.1]
WARNING, no entry stored in dbm for [ENSG00000280189.1]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000273314.1]
WARNING, no entry stored in dbm for [ENSG00000283662.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000259242.2]
WARNING, no entry stored in dbm for [ENSG00000223396.4]
WARNING, no entry stored in dbm for [ENSG00000260246.1]
WARNING, no entry stored in dbm for [ENSG00000187984.13]


	* STAR-Fusion complete.  See output: /tmp/nxf.QylaTwlNTQ/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)