Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/faf713aa7f9b598e8a66046a6c5c9c/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f6eef76c4b2a28bff3d6c340377319/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f6eef76c4b2a28bff3d6c340377319/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/2060de38ad44935437caedd78a2177/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 173247362
[W::hts_idx_load3] The index file is older than the data file: 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	173247362
Known Splicing Events:	171179141
Partial Novel Splicing Events:	1016388
Novel Splicing Events:	1018000
Filtered Splicing Events:	33833

Total splicing  Junctions:	395026
Known Splicing Junctions:	249061
Partial Novel Splicing Junctions:	107039
Novel Splicing Junctions:	38926

===================================================================
Create BED file ...
Create Interact file ...