Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/97651aa8eac6889892e9dd66b5689e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/cd7189d4157312bb07536f257afa62/1173_RDM_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/97651aa8eac6889892e9dd66b5689e/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 271528374
unpaired = 6846906
MERGED PAIRED END READS = 271528374
MATES PROCESSED = 549903654
TOTAL READS     = 278375280
DISTINCT READS  = 5.59309e+07
DISTINCT COUNTS = 1197
MAX COUNT       = 1275717
COUNTS OF 1     = 1.45675e+07
MAX TERMS       = 100
OBSERVED COUNTS (1275718)
1	14567537
2	8822305
3	6856366
4	5442600
5	4276306
6	3338480
7	2590220
8	1997977
9	1542761
10	1193271
11	931006
12	727308
13	572645
14	457898
15	367911
16	299760
17	245344
18	205032
19	171574
20	145307
21	123094
22	106038
23	91851
24	79969
25	69777
26	61798
27	53685
28	47706
29	42788
30	38144
31	33783
32	30184
33	27330
34	24595
35	22159
36	20033
37	18450
38	16722
39	15166
40	13773
41	12780
42	11838
43	10845
44	10073
45	9173
46	8772
47	8051
48	7597
49	7040
50	6514
51	6135
52	5806
53	5365
54	5152
55	4831
56	4657
57	4258
58	4009
59	3866
60	3658
61	3496
62	3347
63	3202
64	2941
65	2779
66	2641
67	2587
68	2407
69	2334
70	2278
71	2214
72	2125
73	1975
74	1892
75	1786
76	1721
77	1568
78	1585
79	1550
80	1475
81	1404
82	1258
83	1319
84	1216
85	1223
86	1226
87	1132
88	1146
89	1063
90	1055
91	990
92	949
93	907
94	857
95	817
96	832
97	785
98	843
99	723
100	743
101	733
102	674
103	676
104	611
105	629
106	578
107	583
108	586
109	557
110	556
111	496
112	509
113	516
114	510
115	470
116	454
117	434
118	444
119	454
120	414
121	442
122	400
123	351
124	387
125	364
126	337
127	330
128	353
129	317
130	336
131	328
132	319
133	302
134	314
135	319
136	298
137	270
138	288
139	248
140	280
141	236
142	255
143	251
144	227
145	219
146	208
147	223
148	216
149	232
150	202
151	209
152	218
153	191
154	210
155	180
156	184
157	182
158	162
159	185
160	212
161	151
162	186
163	175
164	162
165	153
166	157
167	170
168	144
169	148
170	142
171	131
172	134
173	150
174	140
175	136
176	113
177	154
178	126
179	127
180	123
181	120
182	102
183	106
184	113
185	99
186	112
187	112
188	109
189	107
190	99
191	118
192	103
193	94
194	106
195	91
196	88
197	86
198	88
199	103
200	84
201	85
202	81
203	86
204	85
205	75
206	81
207	77
208	84
209	65
210	88
211	85
212	81
213	68
214	81
215	67
216	83
217	69
218	63
219	70
220	69
221	76
222	75
223	56
224	59
225	63
226	53
227	60
228	51
229	64
230	64
231	68
232	59
233	55
234	51
235	50
236	61
237	55
238	52
239	52
240	50
241	44
242	54
243	46
244	44
245	49
246	45
247	47
248	47
249	55
250	39
251	57
252	27
253	44
254	38
255	40
256	46
257	43
258	47
259	52
260	39
261	37
262	35
263	42
264	32
265	34
266	31
267	30
268	41
269	42
270	34
271	37
272	29
273	34
274	32
275	39
276	28
277	40
278	21
279	34
280	43
281	43
282	25
283	27
284	22
285	34
286	23
287	29
288	35
289	23
290	30
291	20
292	32
293	29
294	32
295	22
296	23
297	23
298	35
299	29
300	24
301	32
302	19
303	19
304	28
305	31
306	25
307	27
308	22
309	29
310	25
311	29
312	24
313	27
314	23
315	29
316	19
317	17
318	11
319	18
320	14
321	21
322	20
323	21
324	17
325	24
326	21
327	21
328	25
329	23
330	20
331	21
332	25
333	23
334	14
335	18
336	20
337	27
338	22
339	13
340	23
341	12
342	22
343	21
344	18
345	12
346	19
347	18
348	21
349	10
350	16
351	15
352	11
353	13
354	18
355	9
356	12
357	17
358	22
359	8
360	16
361	11
362	20
363	9
364	10
365	11
366	18
367	24
368	10
369	13
370	12
371	13
372	13
373	18
374	16
375	8
376	11
377	10
378	12
379	16
380	14
381	12
382	6
383	8
384	6
385	16
386	10
387	12
388	6
389	12
390	13
391	12
392	14
393	15
394	13
395	12
396	9
397	11
398	9
399	11
400	10
401	9
402	7
403	9
404	20
405	13
406	9
407	11
408	14
409	13
410	9
411	6
412	9
413	17
414	6
415	11
416	7
417	11
418	8
419	6
420	8
421	17
422	9
423	7
424	13
425	12
426	14
427	9
428	8
429	8
430	7
431	7
432	13
433	10
434	14
435	9
436	8
437	4
438	7
439	13
440	9
441	10
442	6
443	4
444	5
445	11
446	6
447	10
448	6
449	4
450	7
451	11
452	8
453	5
454	6
455	3
456	11
457	12
458	10
459	5
460	5
461	5
462	8
463	7
464	3
465	6
466	7
467	9
468	6
469	6
470	4
471	4
472	8
473	8
474	10
475	6
476	4
477	5
478	8
479	4
480	13
481	10
482	8
483	8
484	7
485	9
486	5
487	4
488	4
489	8
490	7
491	5
492	3
493	5
494	7
495	5
496	8
497	7
498	4
499	4
500	6
501	8
502	8
503	5
504	6
505	5
506	3
507	8
508	5
509	3
510	4
511	10
512	6
513	4
514	6
515	2
516	5
517	5
518	6
519	7
520	4
521	5
522	7
523	5
524	6
525	7
526	3
527	8
528	6
529	2
530	3
531	3
532	4
533	4
534	6
535	6
536	5
537	7
538	6
539	4
540	7
541	8
542	4
543	6
544	5
545	5
546	4
547	5
548	5
549	1
550	5
551	5
552	7
553	2
554	2
555	1
556	6
557	5
558	6
559	5
560	4
561	1
562	4
563	2
564	6
565	5
566	4
567	2
568	7
569	4
570	5
571	3
572	4
573	7
574	2
575	4
576	1
577	4
578	3
579	3
580	4
581	5
582	4
583	4
584	4
585	1
586	6
587	3
588	2
589	3
590	3
591	3
592	4
593	5
594	1
595	1
596	4
597	3
598	1
599	2
600	3
601	3
602	3
603	1
604	1
605	3
606	5
607	5
608	2
609	1
610	2
611	3
612	3
613	2
614	4
615	4
616	3
617	1
618	2
619	4
620	3
621	3
622	2
623	4
624	5
625	5
626	2
627	3
628	5
629	4
630	4
631	3
632	2
633	4
634	3
635	5
636	1
637	1
638	6
639	3
640	4
641	3
642	2
643	5
644	3
645	1
646	1
647	3
648	5
649	4
650	2
651	3
652	3
653	4
654	2
655	2
656	2
657	4
659	1
660	4
661	3
662	3
663	5
664	1
665	2
667	2
668	1
669	2
670	4
671	1
672	4
673	1
674	3
675	1
676	2
677	3
678	3
680	2
681	4
682	1
683	1
684	4
685	3
686	2
688	2
689	3
691	1
692	2
693	1
695	2
696	1
697	2
698	2
699	4
701	4
702	3
703	2
704	2
705	2
706	1
707	4
708	6
709	2
710	2
711	2
712	2
713	4
714	2
715	1
716	2
717	2
718	2
719	3
720	2
721	4
722	1
723	3
724	1
725	4
726	2
727	3
728	1
729	1
730	1
731	5
732	3
733	1
734	2
735	3
736	2
737	4
738	1
739	3
740	1
742	2
743	3
744	2
746	2
747	3
748	1
749	1
750	1
752	2
753	2
754	3
755	2
757	3
758	1
760	1
761	3
762	2
763	1
764	2
765	2
766	3
767	3
768	2
769	2
771	2
772	1
773	1
774	2
775	1
777	2
778	1
781	2
782	1
783	1
784	2
785	1
786	6
791	2
792	2
793	2
794	2
796	3
797	2
798	1
799	1
801	2
802	3
803	2
804	2
805	3
806	3
807	1
809	2
811	2
813	1
814	3
816	1
817	3
819	2
820	2
823	1
826	2
828	1
829	2
832	2
833	1
835	1
836	2
839	2
841	1
842	1
843	1
844	2
847	1
848	1
849	1
852	2
853	1
854	2
856	1
857	2
859	1
860	1
861	3
863	2
864	1
865	3
866	1
867	1
868	1
869	1
871	1
874	2
875	2
877	1
878	2
880	1
881	3
882	1
885	3
886	4
888	1
894	2
897	2
898	1
900	2
902	1
903	2
904	2
905	2
906	4
908	1
911	1
913	2
915	2
916	1
919	2
920	2
923	1
925	1
926	1
927	2
928	1
929	1
930	1
932	1
934	1
938	2
942	2
943	3
946	1
947	2
948	1
950	1
952	1
954	1
956	3
957	1
958	2
959	1
960	1
961	1
962	1
963	1
964	1
967	1
969	2
970	1
971	1
973	2
976	1
979	2
980	2
982	2
983	2
984	1
988	2
991	1
992	1
994	1
995	1
1000	2
1001	2
1002	2
1004	1
1005	1
1006	1
1007	2
1008	2
1014	1
1016	1
1018	2
1024	1
1027	1
1028	1
1035	2
1036	1
1037	1
1039	1
1043	1
1046	2
1047	1
1049	1
1050	1
1053	2
1055	1
1059	1
1060	1
1061	1
1063	1
1066	2
1070	1
1072	1
1073	1
1074	1
1076	1
1077	1
1079	1
1080	1
1081	1
1083	1
1084	1
1086	1
1088	1
1089	2
1094	1
1101	1
1103	3
1105	1
1106	3
1109	1
1110	1
1111	2
1112	1
1115	1
1119	1
1122	1
1125	1
1126	1
1130	1
1131	1
1133	1
1134	1
1137	2
1139	1
1141	1
1142	2
1143	1
1145	1
1146	2
1158	1
1159	2
1160	1
1162	1
1165	1
1166	1
1167	1
1173	1
1174	3
1176	1
1177	1
1178	1
1185	1
1189	1
1190	1
1191	1
1193	1
1205	2
1206	1
1215	1
1217	1
1218	1
1219	1
1220	1
1224	2
1233	1
1236	1
1237	1
1239	1
1241	1
1242	1
1243	1
1244	1
1247	1
1252	1
1256	1
1257	1
1259	1
1266	1
1267	1
1272	1
1277	2
1278	1
1279	1
1286	1
1287	1
1292	1
1296	1
1301	1
1305	1
1311	1
1313	1
1323	1
1324	1
1333	1
1338	1
1344	1
1348	2
1349	2
1354	1
1358	1
1359	1
1362	1
1369	1
1370	1
1373	2
1378	1
1379	1
1382	1
1383	2
1384	1
1385	1
1386	1
1387	1
1392	1
1393	1
1396	2
1399	1
1400	1
1405	1
1407	2
1409	1
1422	1
1425	1
1454	1
1456	1
1458	1
1463	1
1485	1
1490	1
1500	1
1501	1
1502	1
1518	1
1523	1
1525	1
1526	2
1535	1
1541	1
1542	1
1559	1
1571	1
1572	1
1581	1
1583	1
1584	1
1587	1
1597	1
1607	2
1627	1
1640	1
1643	1
1649	1
1651	1
1666	1
1667	1
1672	1
1676	1
1677	1
1679	1
1680	1
1694	1
1697	1
1700	1
1704	1
1711	1
1714	1
1715	1
1726	1
1728	1
1730	1
1732	1
1745	1
1756	1
1758	1
1759	1
1772	1
1773	2
1800	1
1816	1
1818	1
1828	1
1835	1
1838	1
1846	1
1861	1
1864	1
1876	1
1968	1
1976	1
1985	1
2017	1
2059	1
2062	1
2071	1
2111	1
2117	1
2118	1
2123	1
2125	1
2127	1
2134	1
2148	1
2178	1
2245	1
2258	1
2268	1
2288	1
2318	1
2326	1
2330	1
2340	1
2341	1
2343	1
2376	1
2406	1
2453	1
2475	1
2476	1
2478	1
2500	1
2518	1
2523	1
2557	1
2560	1
2567	1
2568	1
2580	1
2652	1
2658	1
2660	1
2677	1
2678	1
2694	2
2695	1
2721	1
2742	1
2746	1
2795	1
2815	1
2835	1
2889	1
2900	1
3030	1
3067	1
3074	1
3170	1
3173	1
3347	1
3495	1
3496	1
3557	1
3593	1
3728	1
3734	1
3785	1
3869	1
3904	1
4052	1
4147	1
4437	1
4746	1
4750	1
4908	1
5112	1
5188	1
6972	1
7416	1
7753	1
18140	1
19928	1
23772	1
61541	1
1275717	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................._..._.........._......................................
._.............._................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]