File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b99b2f9c16ab4e1a228c4b954ef28c/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:28:17
                             Started mapping on |	Jun 08 10:34:39
                                    Finished on |	Jun 08 11:26:16
       Mapping speed, Million of reads per hour |	325.86

                          Number of input reads |	280329213
                      Average input read length |	228
                                    UNIQUE READS:
                   Uniquely mapped reads number |	265702263
                        Uniquely mapped reads % |	94.78%
                          Average mapped length |	227.40
                       Number of splices: Total |	248318366
            Number of splices: Annotated (sjdb) |	243724872
                       Number of splices: GT/AG |	245481452
                       Number of splices: GC/AG |	1582050
                       Number of splices: AT/AC |	149755
               Number of splices: Non-canonical |	1105109
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9694173
             % of reads mapped to multiple loci |	3.46%
        Number of reads mapped to too many loci |	763415
             % of reads mapped to too many loci |	0.27%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3251174
                 % of reads unmapped: too short |	1.16%
                Number of reads unmapped: other |	918188
                     % of reads unmapped: other |	0.33%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%