File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/37e26bfdd1f4e7ab6784a05c36a261/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:53:15
                             Started mapping on |	Jun 08 08:59:31
                                    Finished on |	Jun 08 09:19:45
       Mapping speed, Million of reads per hour |	407.45

                          Number of input reads |	137399873
                      Average input read length |	207
                                    UNIQUE READS:
                   Uniquely mapped reads number |	128917673
                        Uniquely mapped reads % |	93.83%
                          Average mapped length |	206.66
                       Number of splices: Total |	86939708
            Number of splices: Annotated (sjdb) |	84969591
                       Number of splices: GT/AG |	85704576
                       Number of splices: GC/AG |	592137
                       Number of splices: AT/AC |	47459
               Number of splices: Non-canonical |	595536
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.89
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.80
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5886420
             % of reads mapped to multiple loci |	4.28%
        Number of reads mapped to too many loci |	325493
             % of reads mapped to too many loci |	0.24%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1918120
                 % of reads unmapped: too short |	1.40%
                Number of reads unmapped: other |	352167
                     % of reads unmapped: other |	0.26%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%