Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
    java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:34.847 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:34 GMT 2026] MarkDuplicates --INPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:34 GMT 2026] Executing as ?@nf-586edd781c757f8d46f3202100ea9e9e-957ad-dshw4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO	2026-06-08 08:40:34	MarkDuplicates	Start of doWork freeMemory: 105830976; totalMemory: 134217728; maxMemory: 63585648640
INFO	2026-06-08 08:40:34	MarkDuplicates	Reading input file and constructing read end information.
INFO	2026-06-08 08:40:34	MarkDuplicates	Will retain up to 230382784 data points before spilling to disk.
INFO	2026-06-08 08:40:38	MarkDuplicates	Read     1,000,000 records.  Elapsed time: 00:00:02s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,054,915
INFO	2026-06-08 08:40:38	MarkDuplicates	Tracking 4338 as yet unmatched pairs. 405 records in RAM.
INFO	2026-06-08 08:40:40	MarkDuplicates	Read     2,000,000 records.  Elapsed time: 00:00:04s.  Time for last 1,000,000:    2s.  Last read position: chr1:1,626,877
INFO	2026-06-08 08:40:40	MarkDuplicates	Tracking 8287 as yet unmatched pairs. 97 records in RAM.
INFO	2026-06-08 08:40:43	MarkDuplicates	Read     3,000,000 records.  Elapsed time: 00:00:06s.  Time for last 1,000,000:    2s.  Last read position: chr1:3,463,003
INFO	2026-06-08 08:40:43	MarkDuplicates	Tracking 12328 as yet unmatched pairs. 202 records in RAM.
INFO	2026-06-08 08:40:44	MarkDuplicates	Read     4,000,000 records.  Elapsed time: 00:00:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:6,785,531
INFO	2026-06-08 08:40:44	MarkDuplicates	Tracking 16736 as yet unmatched pairs. 377 records in RAM.
INFO	2026-06-08 08:40:46	MarkDuplicates	Read     5,000,000 records.  Elapsed time: 00:00:10s.  Time for last 1,000,000:    2s.  Last read position: chr1:9,823,639
INFO	2026-06-08 08:40:46	MarkDuplicates	Tracking 19876 as yet unmatched pairs. 42 records in RAM.
INFO	2026-06-08 08:40:48	MarkDuplicates	Read     6,000,000 records.  Elapsed time: 00:00:12s.  Time for last 1,000,000:    2s.  Last read position: chr1:11,997,304
INFO	2026-06-08 08:40:48	MarkDuplicates	Tracking 23544 as yet unmatched pairs. 70 records in RAM.
INFO	2026-06-08 08:40:50	MarkDuplicates	Read     7,000,000 records.  Elapsed time: 00:00:14s.  Time for last 1,000,000:    1s.  Last read position: chr1:15,933,700
INFO	2026-06-08 08:40:50	MarkDuplicates	Tracking 26811 as yet unmatched pairs. 143 records in RAM.
INFO	2026-06-08 08:40:52	MarkDuplicates	Read     8,000,000 records.  Elapsed time: 00:00:16s.  Time for last 1,000,000:    2s.  Last read position: chr1:17,103,018
INFO	2026-06-08 08:40:52	MarkDuplicates	Tracking 30268 as yet unmatched pairs. 160 records in RAM.
INFO	2026-06-08 08:40:55	MarkDuplicates	Read     9,000,000 records.  Elapsed time: 00:00:19s.  Time for last 1,000,000:    3s.  Last read position: chr1:19,644,759
INFO	2026-06-08 08:40:55	MarkDuplicates	Tracking 34378 as yet unmatched pairs. 519 records in RAM.
INFO	2026-06-08 08:40:57	MarkDuplicates	Read    10,000,000 records.  Elapsed time: 00:00:20s.  Time for last 1,000,000:    1s.  Last read position: chr1:21,828,363
INFO	2026-06-08 08:40:57	MarkDuplicates	Tracking 37407 as yet unmatched pairs. 177 records in RAM.
INFO	2026-06-08 08:40:58	MarkDuplicates	Read    11,000,000 records.  Elapsed time: 00:00:22s.  Time for last 1,000,000:    1s.  Last read position: chr1:21,881,387
INFO	2026-06-08 08:40:58	MarkDuplicates	Tracking 41482 as yet unmatched pairs. 274 records in RAM.
INFO	2026-06-08 08:41:01	MarkDuplicates	Read    12,000,000 records.  Elapsed time: 00:00:24s.  Time for last 1,000,000:    2s.  Last read position: chr1:23,752,437
INFO	2026-06-08 08:41:01	MarkDuplicates	Tracking 44649 as yet unmatched pairs. 77 records in RAM.
INFO	2026-06-08 08:41:02	MarkDuplicates	Read    13,000,000 records.  Elapsed time: 00:00:26s.  Time for last 1,000,000:    1s.  Last read position: chr1:26,344,181
INFO	2026-06-08 08:41:02	MarkDuplicates	Tracking 47984 as yet unmatched pairs. 208 records in RAM.
INFO	2026-06-08 08:41:05	MarkDuplicates	Read    14,000,000 records.  Elapsed time: 00:00:28s.  Time for last 1,000,000:    2s.  Last read position: chr1:27,350,833
INFO	2026-06-08 08:41:05	MarkDuplicates	Tracking 51225 as yet unmatched pairs. 96 records in RAM.
INFO	2026-06-08 08:41:06	MarkDuplicates	Read    15,000,000 records.  Elapsed time: 00:00:30s.  Time for last 1,000,000:    1s.  Last read position: chr1:30,878,624
INFO	2026-06-08 08:41:06	MarkDuplicates	Tracking 54729 as yet unmatched pairs. 70 records in RAM.
INFO	2026-06-08 08:41:08	MarkDuplicates	Read    16,000,000 records.  Elapsed time: 00:00:32s.  Time for last 1,000,000:    1s.  Last read position: chr1:32,228,725
INFO	2026-06-08 08:41:08	MarkDuplicates	Tracking 58671 as yet unmatched pairs. 372 records in RAM.
INFO	2026-06-08 08:41:10	MarkDuplicates	Read    17,000,000 records.  Elapsed time: 00:00:33s.  Time for last 1,000,000:    1s.  Last read position: chr1:33,611,159
INFO	2026-06-08 08:41:10	MarkDuplicates	Tracking 62107 as yet unmatched pairs. 24 records in RAM.
INFO	2026-06-08 08:41:12	MarkDuplicates	Read    18,000,000 records.  Elapsed time: 00:00:36s.  Time for last 1,000,000:    2s.  Last read position: chr1:36,319,851
INFO	2026-06-08 08:41:12	MarkDuplicates	Tracking 65662 as yet unmatched pairs. 104 records in RAM.
INFO	2026-06-08 08:41:14	MarkDuplicates	Read    19,000,000 records.  Elapsed time: 00:00:38s.  Time for last 1,000,000:    1s.  Last read position: chr1:39,427,480
INFO	2026-06-08 08:41:14	MarkDuplicates	Tracking 69225 as yet unmatched pairs. 292 records in RAM.
INFO	2026-06-08 08:41:16	MarkDuplicates	Read    20,000,000 records.  Elapsed time: 00:00:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:41,513,084
INFO	2026-06-08 08:41:16	MarkDuplicates	Tracking 72343 as yet unmatched pairs. 33 records in RAM.
INFO	2026-06-08 08:41:18	MarkDuplicates	Read    21,000,000 records.  Elapsed time: 00:00:42s.  Time for last 1,000,000:    2s.  Last read position: chr1:43,603,812
INFO	2026-06-08 08:41:18	MarkDuplicates	Tracking 76247 as yet unmatched pairs. 249 records in RAM.
INFO	2026-06-08 08:41:20	MarkDuplicates	Read    22,000,000 records.  Elapsed time: 00:00:44s.  Time for last 1,000,000:    2s.  Last read position: chr1:45,511,391
INFO	2026-06-08 08:41:20	MarkDuplicates	Tracking 79677 as yet unmatched pairs. 153 records in RAM.
INFO	2026-06-08 08:41:22	MarkDuplicates	Read    23,000,000 records.  Elapsed time: 00:00:45s.  Time for last 1,000,000:    1s.  Last read position: chr1:48,435,978
INFO	2026-06-08 08:41:22	MarkDuplicates	Tracking 82897 as yet unmatched pairs. 33 records in RAM.
INFO	2026-06-08 08:41:24	MarkDuplicates	Read    24,000,000 records.  Elapsed time: 00:00:47s.  Time for last 1,000,000:    2s.  Last read position: chr1:54,875,191
INFO	2026-06-08 08:41:24	MarkDuplicates	Tracking 86227 as yet unmatched pairs. 165 records in RAM.
INFO	2026-06-08 08:41:26	MarkDuplicates	Read    25,000,000 records.  Elapsed time: 00:00:49s.  Time for last 1,000,000:    1s.  Last read position: chr1:66,958,159
INFO	2026-06-08 08:41:26	MarkDuplicates	Tracking 89559 as yet unmatched pairs. 57 records in RAM.
INFO	2026-06-08 08:41:27	MarkDuplicates	Read    26,000,000 records.  Elapsed time: 00:00:51s.  Time for last 1,000,000:    1s.  Last read position: chr1:88,684,559
INFO	2026-06-08 08:41:27	MarkDuplicates	Tracking 92835 as yet unmatched pairs. 162 records in RAM.
INFO	2026-06-08 08:41:29	MarkDuplicates	Read    27,000,000 records.  Elapsed time: 00:00:53s.  Time for last 1,000,000:    1s.  Last read position: chr1:100,059,886
INFO	2026-06-08 08:41:29	MarkDuplicates	Tracking 95392 as yet unmatched pairs. 33 records in RAM.
INFO	2026-06-08 08:41:31	MarkDuplicates	Read    28,000,000 records.  Elapsed time: 00:00:55s.  Time for last 1,000,000:    1s.  Last read position: chr1:109,757,111
INFO	2026-06-08 08:41:31	MarkDuplicates	Tracking 98569 as yet unmatched pairs. 274 records in RAM.
INFO	2026-06-08 08:41:33	MarkDuplicates	Read    29,000,000 records.  Elapsed time: 00:00:56s.  Time for last 1,000,000:    1s.  Last read position: chr1:113,642,226
INFO	2026-06-08 08:41:33	MarkDuplicates	Tracking 101943 as yet unmatched pairs. 360 records in RAM.
INFO	2026-06-08 08:41:35	MarkDuplicates	Read    30,000,000 records.  Elapsed time: 00:00:59s.  Time for last 1,000,000:    2s.  Last read position: chr1:116,570,919
INFO	2026-06-08 08:41:35	MarkDuplicates	Tracking 104753 as yet unmatched pairs. 17 records in RAM.
INFO	2026-06-08 08:41:38	MarkDuplicates	Read    31,000,000 records.  Elapsed time: 00:01:01s.  Time for last 1,000,000:    2s.  Last read position: chr1:120,538,595
INFO	2026-06-08 08:41:38	MarkDuplicates	Tracking 107561 as yet unmatched pairs. 31 records in RAM.
INFO	2026-06-08 08:41:39	MarkDuplicates	Read    32,000,000 records.  Elapsed time: 00:01:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:146,968,458
INFO	2026-06-08 08:41:39	MarkDuplicates	Tracking 109143 as yet unmatched pairs. 126 records in RAM.
INFO	2026-06-08 08:41:41	MarkDuplicates	Read    33,000,000 records.  Elapsed time: 00:01:04s.  Time for last 1,000,000:    1s.  Last read position: chr1:149,502,421
INFO	2026-06-08 08:41:41	MarkDuplicates	Tracking 110585 as yet unmatched pairs. 14 records in RAM.
INFO	2026-06-08 08:41:42	MarkDuplicates	Read    34,000,000 records.  Elapsed time: 00:01:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:150,266,053
INFO	2026-06-08 08:41:42	MarkDuplicates	Tracking 113310 as yet unmatched pairs. 166 records in RAM.
INFO	2026-06-08 08:41:44	MarkDuplicates	Read    35,000,000 records.  Elapsed time: 00:01:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:151,290,445
INFO	2026-06-08 08:41:44	MarkDuplicates	Tracking 116399 as yet unmatched pairs. 41 records in RAM.
INFO	2026-06-08 08:41:46	MarkDuplicates	Read    36,000,000 records.  Elapsed time: 00:01:10s.  Time for last 1,000,000:    1s.  Last read position: chr1:153,760,346
INFO	2026-06-08 08:41:46	MarkDuplicates	Tracking 119544 as yet unmatched pairs. 129 records in RAM.
INFO	2026-06-08 08:41:48	MarkDuplicates	Read    37,000,000 records.  Elapsed time: 00:01:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,183,049
INFO	2026-06-08 08:41:48	MarkDuplicates	Tracking 122555 as yet unmatched pairs. 69 records in RAM.
INFO	2026-06-08 08:41:49	MarkDuplicates	Read    38,000,000 records.  Elapsed time: 00:01:13s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,058,261
INFO	2026-06-08 08:41:49	MarkDuplicates	Tracking 126359 as yet unmatched pairs. 576 records in RAM.
INFO	2026-06-08 08:41:51	MarkDuplicates	Read    39,000,000 records.  Elapsed time: 00:01:15s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,672,635
INFO	2026-06-08 08:41:51	MarkDuplicates	Tracking 128982 as yet unmatched pairs. 176 records in RAM.
INFO	2026-06-08 08:41:53	MarkDuplicates	Read    40,000,000 records.  Elapsed time: 00:01:17s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,134,884
INFO	2026-06-08 08:41:53	MarkDuplicates	Tracking 134065 as yet unmatched pairs. 1104 records in RAM.
INFO	2026-06-08 08:41:55	MarkDuplicates	Read    41,000,000 records.  Elapsed time: 00:01:18s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,551,986
INFO	2026-06-08 08:41:55	MarkDuplicates	Tracking 136848 as yet unmatched pairs. 57 records in RAM.
INFO	2026-06-08 08:41:57	MarkDuplicates	Read    42,000,000 records.  Elapsed time: 00:01:20s.  Time for last 1,000,000:    2s.  Last read position: chr1:160,358,164
INFO	2026-06-08 08:41:57	MarkDuplicates	Tracking 140173 as yet unmatched pairs. 129 records in RAM.
INFO	2026-06-08 08:42:00	MarkDuplicates	Read    43,000,000 records.  Elapsed time: 00:01:24s.  Time for last 1,000,000:    3s.  Last read position: chr1:167,411,986
INFO	2026-06-08 08:42:00	MarkDuplicates	Tracking 143102 as yet unmatched pairs. 44 records in RAM.
INFO	2026-06-08 08:42:02	MarkDuplicates	Read    44,000,000 records.  Elapsed time: 00:01:26s.  Time for last 1,000,000:    1s.  Last read position: chr1:171,558,022
INFO	2026-06-08 08:42:02	MarkDuplicates	Tracking 146253 as yet unmatched pairs. 136 records in RAM.
INFO	2026-06-08 08:42:04	MarkDuplicates	Read    45,000,000 records.  Elapsed time: 00:01:27s.  Time for last 1,000,000:    1s.  Last read position: chr1:181,089,814
INFO	2026-06-08 08:42:04	MarkDuplicates	Tracking 149418 as yet unmatched pairs. 97 records in RAM.
INFO	2026-06-08 08:42:05	MarkDuplicates	Read    46,000,000 records.  Elapsed time: 00:01:29s.  Time for last 1,000,000:    1s.  Last read position: chr1:186,339,716
INFO	2026-06-08 08:42:05	MarkDuplicates	Tracking 152619 as yet unmatched pairs. 297 records in RAM.
INFO	2026-06-08 08:42:07	MarkDuplicates	Read    47,000,000 records.  Elapsed time: 00:01:31s.  Time for last 1,000,000:    1s.  Last read position: chr1:201,387,066
INFO	2026-06-08 08:42:07	MarkDuplicates	Tracking 155703 as yet unmatched pairs. 644 records in RAM.
INFO	2026-06-08 08:42:09	MarkDuplicates	Read    48,000,000 records.  Elapsed time: 00:01:33s.  Time for last 1,000,000:    1s.  Last read position: chr1:202,567,791
INFO	2026-06-08 08:42:09	MarkDuplicates	Tracking 158422 as yet unmatched pairs. 82 records in RAM.
INFO	2026-06-08 08:42:11	MarkDuplicates	Read    49,000,000 records.  Elapsed time: 00:01:34s.  Time for last 1,000,000:    1s.  Last read position: chr1:204,460,364
INFO	2026-06-08 08:42:11	MarkDuplicates	Tracking 161531 as yet unmatched pairs. 95 records in RAM.
INFO	2026-06-08 08:42:12	MarkDuplicates	Read    50,000,000 records.  Elapsed time: 00:01:36s.  Time for last 1,000,000:    1s.  Last read position: chr1:207,767,780
INFO	2026-06-08 08:42:12	MarkDuplicates	Tracking 164927 as yet unmatched pairs. 401 records in RAM.
INFO	2026-06-08 08:42:14	MarkDuplicates	Read    51,000,000 records.  Elapsed time: 00:01:38s.  Time for last 1,000,000:    1s.  Last read position: chr1:214,663,675
INFO	2026-06-08 08:42:14	MarkDuplicates	Tracking 167911 as yet unmatched pairs. 68 records in RAM.
INFO	2026-06-08 08:42:16	MarkDuplicates	Read    52,000,000 records.  Elapsed time: 00:01:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:225,498,384
INFO	2026-06-08 08:42:16	MarkDuplicates	Tracking 170936 as yet unmatched pairs. 204 records in RAM.
INFO	2026-06-08 08:42:17	MarkDuplicates	Read    53,000,000 records.  Elapsed time: 00:01:41s.  Time for last 1,000,000:    1s.  Last read position: chr1:228,147,404
INFO	2026-06-08 08:42:17	MarkDuplicates	Tracking 174726 as yet unmatched pairs. 675 records in RAM.
INFO	2026-06-08 08:42:19	MarkDuplicates	Read    54,000,000 records.  Elapsed time: 00:01:43s.  Time for last 1,000,000:    1s.  Last read position: chr1:234,608,682
INFO	2026-06-08 08:42:19	MarkDuplicates	Tracking 178695 as yet unmatched pairs. 463 records in RAM.
INFO	2026-06-08 08:42:22	MarkDuplicates	Read    55,000,000 records.  Elapsed time: 00:01:45s.  Time for last 1,000,000:    2s.  Last read position: chr1:244,856,748
INFO	2026-06-08 08:42:22	MarkDuplicates	Tracking 181743 as yet unmatched pairs. 153 records in RAM.
INFO	2026-06-08 08:42:25	MarkDuplicates	Read    56,000,000 records.  Elapsed time: 00:01:49s.  Time for last 1,000,000:    3s.  Last read position: chr2:3,577,727
INFO	2026-06-08 08:42:25	MarkDuplicates	Tracking 186388 as yet unmatched pairs. 185552 records in RAM.
INFO	2026-06-08 08:42:27	MarkDuplicates	Read    57,000,000 records.  Elapsed time: 00:01:51s.  Time for last 1,000,000:    1s.  Last read position: chr2:15,475,801
INFO	2026-06-08 08:42:27	MarkDuplicates	Tracking 188695 as yet unmatched pairs. 187841 records in RAM.
INFO	2026-06-08 08:42:29	MarkDuplicates	Read    58,000,000 records.  Elapsed time: 00:01:53s.  Time for last 1,000,000:    2s.  Last read position: chr2:24,918,670
INFO	2026-06-08 08:42:29	MarkDuplicates	Tracking 192120 as yet unmatched pairs. 191255 records in RAM.
INFO	2026-06-08 08:42:31	MarkDuplicates	Read    59,000,000 records.  Elapsed time: 00:01:55s.  Time for last 1,000,000:    1s.  Last read position: chr2:27,306,488
INFO	2026-06-08 08:42:31	MarkDuplicates	Tracking 195709 as yet unmatched pairs. 194829 records in RAM.
INFO	2026-06-08 08:42:34	MarkDuplicates	Read    60,000,000 records.  Elapsed time: 00:01:57s.  Time for last 1,000,000:    2s.  Last read position: chr2:32,464,529
INFO	2026-06-08 08:42:34	MarkDuplicates	Tracking 199249 as yet unmatched pairs. 198360 records in RAM.
INFO	2026-06-08 08:42:35	MarkDuplicates	Read    61,000,000 records.  Elapsed time: 00:01:59s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,257
INFO	2026-06-08 08:42:35	MarkDuplicates	Tracking 332293 as yet unmatched pairs. 191408 records in RAM.
INFO	2026-06-08 08:42:37	MarkDuplicates	Read    62,000,000 records.  Elapsed time: 00:02:01s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,264
INFO	2026-06-08 08:42:37	MarkDuplicates	Tracking 457123 as yet unmatched pairs. 185049 records in RAM.
INFO	2026-06-08 08:42:40	MarkDuplicates	Read    63,000,000 records.  Elapsed time: 00:02:03s.  Time for last 1,000,000:    2s.  Last read position: chr2:32,916,264
INFO	2026-06-08 08:42:40	MarkDuplicates	Tracking 1104856 as yet unmatched pairs. 151655 records in RAM.
INFO	2026-06-08 08:42:42	MarkDuplicates	Read    64,000,000 records.  Elapsed time: 00:02:06s.  Time for last 1,000,000:    2s.  Last read position: chr2:32,916,351
INFO	2026-06-08 08:42:42	MarkDuplicates	Tracking 1635988 as yet unmatched pairs. 123972 records in RAM.
INFO	2026-06-08 08:42:44	MarkDuplicates	Read    65,000,000 records.  Elapsed time: 00:02:07s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-08 08:42:44	MarkDuplicates	Tracking 1786554 as yet unmatched pairs. 116102 records in RAM.
INFO	2026-06-08 08:42:45	MarkDuplicates	Read    66,000,000 records.  Elapsed time: 00:02:09s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-08 08:42:45	MarkDuplicates	Tracking 1790620 as yet unmatched pairs. 115968 records in RAM.
INFO	2026-06-08 08:42:47	MarkDuplicates	Read    67,000,000 records.  Elapsed time: 00:02:11s.  Time for last 1,000,000:    1s.  Last read position: chr2:33,188,686
INFO	2026-06-08 08:42:47	MarkDuplicates	Tracking 1927180 as yet unmatched pairs. 108753 records in RAM.
INFO	2026-06-08 08:42:49	MarkDuplicates	Read    68,000,000 records.  Elapsed time: 00:02:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:42,261,122
INFO	2026-06-08 08:42:49	MarkDuplicates	Tracking 1924518 as yet unmatched pairs. 106080 records in RAM.
INFO	2026-06-08 08:42:51	MarkDuplicates	Read    69,000,000 records.  Elapsed time: 00:02:15s.  Time for last 1,000,000:    2s.  Last read position: chr2:43,982,410
INFO	2026-06-08 08:42:51	MarkDuplicates	Tracking 1920890 as yet unmatched pairs. 102442 records in RAM.
INFO	2026-06-08 08:42:53	MarkDuplicates	Read    70,000,000 records.  Elapsed time: 00:02:17s.  Time for last 1,000,000:    2s.  Last read position: chr2:54,624,931
INFO	2026-06-08 08:42:53	MarkDuplicates	Tracking 1917852 as yet unmatched pairs. 99382 records in RAM.
INFO	2026-06-08 08:42:55	MarkDuplicates	Read    71,000,000 records.  Elapsed time: 00:02:19s.  Time for last 1,000,000:    2s.  Last read position: chr2:58,164,519
INFO	2026-06-08 08:42:55	MarkDuplicates	Tracking 1913640 as yet unmatched pairs. 95160 records in RAM.
INFO	2026-06-08 08:42:58	MarkDuplicates	Read    72,000,000 records.  Elapsed time: 00:02:21s.  Time for last 1,000,000:    2s.  Last read position: chr2:69,124,630
INFO	2026-06-08 08:42:58	MarkDuplicates	Tracking 1911018 as yet unmatched pairs. 92522 records in RAM.
INFO	2026-06-08 08:43:00	MarkDuplicates	Read    73,000,000 records.  Elapsed time: 00:02:24s.  Time for last 1,000,000:    2s.  Last read position: chr2:73,452,514
INFO	2026-06-08 08:43:00	MarkDuplicates	Tracking 1907480 as yet unmatched pairs. 88974 records in RAM.
INFO	2026-06-08 08:43:02	MarkDuplicates	Read    74,000,000 records.  Elapsed time: 00:02:26s.  Time for last 1,000,000:    1s.  Last read position: chr2:74,462,955
INFO	2026-06-08 08:43:02	MarkDuplicates	Tracking 1904445 as yet unmatched pairs. 85935 records in RAM.
INFO	2026-06-08 08:43:04	MarkDuplicates	Read    75,000,000 records.  Elapsed time: 00:02:28s.  Time for last 1,000,000:    1s.  Last read position: chr2:86,127,963
INFO	2026-06-08 08:43:04	MarkDuplicates	Tracking 1901032 as yet unmatched pairs. 82500 records in RAM.
INFO	2026-06-08 08:43:06	MarkDuplicates	Read    76,000,000 records.  Elapsed time: 00:02:30s.  Time for last 1,000,000:    2s.  Last read position: chr2:96,286,736
INFO	2026-06-08 08:43:06	MarkDuplicates	Tracking 1898513 as yet unmatched pairs. 79967 records in RAM.
INFO	2026-06-08 08:43:08	MarkDuplicates	Read    77,000,000 records.  Elapsed time: 00:02:32s.  Time for last 1,000,000:    2s.  Last read position: chr2:101,002,702
INFO	2026-06-08 08:43:08	MarkDuplicates	Tracking 1896711 as yet unmatched pairs. 78154 records in RAM.
INFO	2026-06-08 08:43:10	MarkDuplicates	Read    78,000,000 records.  Elapsed time: 00:02:34s.  Time for last 1,000,000:    2s.  Last read position: chr2:108,753,829
INFO	2026-06-08 08:43:10	MarkDuplicates	Tracking 1892961 as yet unmatched pairs. 74386 records in RAM.
INFO	2026-06-08 08:43:12	MarkDuplicates	Read    79,000,000 records.  Elapsed time: 00:02:36s.  Time for last 1,000,000:    1s.  Last read position: chr2:110,455,472
INFO	2026-06-08 08:43:12	MarkDuplicates	Tracking 1890315 as yet unmatched pairs. 71731 records in RAM.
INFO	2026-06-08 08:43:14	MarkDuplicates	Read    80,000,000 records.  Elapsed time: 00:02:38s.  Time for last 1,000,000:    1s.  Last read position: chr2:119,247,982
INFO	2026-06-08 08:43:14	MarkDuplicates	Tracking 1888266 as yet unmatched pairs. 69665 records in RAM.
INFO	2026-06-08 08:43:16	MarkDuplicates	Read    81,000,000 records.  Elapsed time: 00:02:40s.  Time for last 1,000,000:    2s.  Last read position: chr2:128,268,231
INFO	2026-06-08 08:43:16	MarkDuplicates	Tracking 1884915 as yet unmatched pairs. 66301 records in RAM.
INFO	2026-06-08 08:43:18	MarkDuplicates	Read    82,000,000 records.  Elapsed time: 00:02:42s.  Time for last 1,000,000:    2s.  Last read position: chr2:148,469,314
INFO	2026-06-08 08:43:18	MarkDuplicates	Tracking 1881638 as yet unmatched pairs. 63011 records in RAM.
INFO	2026-06-08 08:43:20	MarkDuplicates	Read    83,000,000 records.  Elapsed time: 00:02:44s.  Time for last 1,000,000:    1s.  Last read position: chr2:162,008,475
INFO	2026-06-08 08:43:20	MarkDuplicates	Tracking 1878809 as yet unmatched pairs. 60158 records in RAM.
INFO	2026-06-08 08:43:22	MarkDuplicates	Read    84,000,000 records.  Elapsed time: 00:02:46s.  Time for last 1,000,000:    1s.  Last read position: chr2:173,366,423
INFO	2026-06-08 08:43:22	MarkDuplicates	Tracking 1875822 as yet unmatched pairs. 57156 records in RAM.
INFO	2026-06-08 08:43:24	MarkDuplicates	Read    85,000,000 records.  Elapsed time: 00:02:48s.  Time for last 1,000,000:    1s.  Last read position: chr2:181,892,072
INFO	2026-06-08 08:43:24	MarkDuplicates	Tracking 1873098 as yet unmatched pairs. 54417 records in RAM.
INFO	2026-06-08 08:43:26	MarkDuplicates	Read    86,000,000 records.  Elapsed time: 00:02:50s.  Time for last 1,000,000:    1s.  Last read position: chr2:188,996,462
INFO	2026-06-08 08:43:26	MarkDuplicates	Tracking 1870792 as yet unmatched pairs. 52104 records in RAM.
INFO	2026-06-08 08:43:28	MarkDuplicates	Read    87,000,000 records.  Elapsed time: 00:02:52s.  Time for last 1,000,000:    1s.  Last read position: chr2:189,066,401
INFO	2026-06-08 08:43:28	MarkDuplicates	Tracking 1865840 as yet unmatched pairs. 47141 records in RAM.
INFO	2026-06-08 08:43:30	MarkDuplicates	Read    88,000,000 records.  Elapsed time: 00:02:54s.  Time for last 1,000,000:    2s.  Last read position: chr2:197,501,094
INFO	2026-06-08 08:43:30	MarkDuplicates	Tracking 1862965 as yet unmatched pairs. 44253 records in RAM.
INFO	2026-06-08 08:43:32	MarkDuplicates	Read    89,000,000 records.  Elapsed time: 00:02:56s.  Time for last 1,000,000:    1s.  Last read position: chr2:205,716,283
INFO	2026-06-08 08:43:32	MarkDuplicates	Tracking 1859988 as yet unmatched pairs. 41248 records in RAM.
INFO	2026-06-08 08:43:34	MarkDuplicates	Read    90,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,367,992
INFO	2026-06-08 08:43:34	MarkDuplicates	Tracking 1857604 as yet unmatched pairs. 38853 records in RAM.
INFO	2026-06-08 08:43:35	MarkDuplicates	Read    91,000,000 records.  Elapsed time: 00:02:59s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,394,679
INFO	2026-06-08 08:43:35	MarkDuplicates	Tracking 1854963 as yet unmatched pairs. 36209 records in RAM.
INFO	2026-06-08 08:43:37	MarkDuplicates	Read    92,000,000 records.  Elapsed time: 00:03:01s.  Time for last 1,000,000:    2s.  Last read position: chr2:215,433,401
INFO	2026-06-08 08:43:37	MarkDuplicates	Tracking 1851679 as yet unmatched pairs. 32923 records in RAM.
INFO	2026-06-08 08:43:39	MarkDuplicates	Read    93,000,000 records.  Elapsed time: 00:03:03s.  Time for last 1,000,000:    1s.  Last read position: chr2:217,836,015
INFO	2026-06-08 08:43:39	MarkDuplicates	Tracking 1848533 as yet unmatched pairs. 29766 records in RAM.
INFO	2026-06-08 08:43:41	MarkDuplicates	Read    94,000,000 records.  Elapsed time: 00:03:05s.  Time for last 1,000,000:    1s.  Last read position: chr2:218,430,750
INFO	2026-06-08 08:43:41	MarkDuplicates	Tracking 1844812 as yet unmatched pairs. 26039 records in RAM.
INFO	2026-06-08 08:43:43	MarkDuplicates	Read    95,000,000 records.  Elapsed time: 00:03:07s.  Time for last 1,000,000:    2s.  Last read position: chr2:219,418,539
INFO	2026-06-08 08:43:43	MarkDuplicates	Tracking 1846132 as yet unmatched pairs. 27338 records in RAM.
INFO	2026-06-08 08:43:45	MarkDuplicates	Read    96,000,000 records.  Elapsed time: 00:03:08s.  Time for last 1,000,000:    1s.  Last read position: chr2:219,543,408
INFO	2026-06-08 08:43:45	MarkDuplicates	Tracking 1836457 as yet unmatched pairs. 17641 records in RAM.
INFO	2026-06-08 08:43:47	MarkDuplicates	Read    97,000,000 records.  Elapsed time: 00:03:10s.  Time for last 1,000,000:    1s.  Last read position: chr2:231,172,592
INFO	2026-06-08 08:43:47	MarkDuplicates	Tracking 1832892 as yet unmatched pairs. 14026 records in RAM.
INFO	2026-06-08 08:43:49	MarkDuplicates	Read    98,000,000 records.  Elapsed time: 00:03:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:233,450,039
INFO	2026-06-08 08:43:49	MarkDuplicates	Tracking 1830138 as yet unmatched pairs. 11263 records in RAM.
INFO	2026-06-08 08:43:50	MarkDuplicates	Read    99,000,000 records.  Elapsed time: 00:03:14s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,376,900
INFO	2026-06-08 08:43:50	MarkDuplicates	Tracking 1826697 as yet unmatched pairs. 7820 records in RAM.
INFO	2026-06-08 08:43:52	MarkDuplicates	Read   100,000,000 records.  Elapsed time: 00:03:16s.  Time for last 1,000,000:    1s.  Last read position: chr2:240,606,551
INFO	2026-06-08 08:43:52	MarkDuplicates	Tracking 1822687 as yet unmatched pairs. 3791 records in RAM.
INFO	2026-06-08 08:43:54	MarkDuplicates	Read   101,000,000 records.  Elapsed time: 00:03:18s.  Time for last 1,000,000:    2s.  Last read position: chr3:3,156,159
INFO	2026-06-08 08:43:54	MarkDuplicates	Tracking 1818875 as yet unmatched pairs. 92754 records in RAM.
INFO	2026-06-08 08:43:56	MarkDuplicates	Read   102,000,000 records.  Elapsed time: 00:03:20s.  Time for last 1,000,000:    1s.  Last read position: chr3:10,234,605
INFO	2026-06-08 08:43:56	MarkDuplicates	Tracking 1815403 as yet unmatched pairs. 89267 records in RAM.
INFO	2026-06-08 08:43:57	MarkDuplicates	Read   103,000,000 records.  Elapsed time: 00:03:21s.  Time for last 1,000,000:    1s.  Last read position: chr3:15,039,168
INFO	2026-06-08 08:43:57	MarkDuplicates	Tracking 1811995 as yet unmatched pairs. 85832 records in RAM.
INFO	2026-06-08 08:43:59	MarkDuplicates	Read   104,000,000 records.  Elapsed time: 00:03:23s.  Time for last 1,000,000:    1s.  Last read position: chr3:33,124,486
INFO	2026-06-08 08:43:59	MarkDuplicates	Tracking 1808806 as yet unmatched pairs. 82620 records in RAM.
INFO	2026-06-08 08:44:01	MarkDuplicates	Read   105,000,000 records.  Elapsed time: 00:03:24s.  Time for last 1,000,000:    1s.  Last read position: chr3:39,118,109
INFO	2026-06-08 08:44:01	MarkDuplicates	Tracking 1805626 as yet unmatched pairs. 79417 records in RAM.
INFO	2026-06-08 08:44:02	MarkDuplicates	Read   106,000,000 records.  Elapsed time: 00:03:26s.  Time for last 1,000,000:    1s.  Last read position: chr3:42,620,057
INFO	2026-06-08 08:44:02	MarkDuplicates	Tracking 1802676 as yet unmatched pairs. 76451 records in RAM.
INFO	2026-06-08 08:44:04	MarkDuplicates	Read   107,000,000 records.  Elapsed time: 00:03:28s.  Time for last 1,000,000:    1s.  Last read position: chr3:46,996,350
INFO	2026-06-08 08:44:04	MarkDuplicates	Tracking 1799573 as yet unmatched pairs. 73328 records in RAM.
INFO	2026-06-08 08:44:06	MarkDuplicates	Read   108,000,000 records.  Elapsed time: 00:03:29s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,849,630
INFO	2026-06-08 08:44:06	MarkDuplicates	Tracking 1795905 as yet unmatched pairs. 69641 records in RAM.
INFO	2026-06-08 08:44:07	MarkDuplicates	Read   109,000,000 records.  Elapsed time: 00:03:31s.  Time for last 1,000,000:    1s.  Last read position: chr3:48,569,724
INFO	2026-06-08 08:44:07	MarkDuplicates	Tracking 1792742 as yet unmatched pairs. 66464 records in RAM.
INFO	2026-06-08 08:44:09	MarkDuplicates	Read   110,000,000 records.  Elapsed time: 00:03:33s.  Time for last 1,000,000:    2s.  Last read position: chr3:49,022,489
INFO	2026-06-08 08:44:09	MarkDuplicates	Tracking 1788887 as yet unmatched pairs. 62602 records in RAM.
INFO	2026-06-08 08:44:11	MarkDuplicates	Read   111,000,000 records.  Elapsed time: 00:03:34s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,531,829
INFO	2026-06-08 08:44:11	MarkDuplicates	Tracking 1785490 as yet unmatched pairs. 59198 records in RAM.
INFO	2026-06-08 08:44:12	MarkDuplicates	Read   112,000,000 records.  Elapsed time: 00:03:36s.  Time for last 1,000,000:    1s.  Last read position: chr3:50,288,409
INFO	2026-06-08 08:44:12	MarkDuplicates	Tracking 1781806 as yet unmatched pairs. 55503 records in RAM.
INFO	2026-06-08 08:44:14	MarkDuplicates	Read   113,000,000 records.  Elapsed time: 00:03:37s.  Time for last 1,000,000:    1s.  Last read position: chr3:52,352,088
INFO	2026-06-08 08:44:14	MarkDuplicates	Tracking 1778303 as yet unmatched pairs. 51983 records in RAM.
INFO	2026-06-08 08:44:16	MarkDuplicates	Read   114,000,000 records.  Elapsed time: 00:03:39s.  Time for last 1,000,000:    2s.  Last read position: chr3:53,497,317
INFO	2026-06-08 08:44:16	MarkDuplicates	Tracking 1774732 as yet unmatched pairs. 48402 records in RAM.
INFO	2026-06-08 08:44:17	MarkDuplicates	Read   115,000,000 records.  Elapsed time: 00:03:41s.  Time for last 1,000,000:    1s.  Last read position: chr3:58,168,509
INFO	2026-06-08 08:44:17	MarkDuplicates	Tracking 1771733 as yet unmatched pairs. 45383 records in RAM.
INFO	2026-06-08 08:44:19	MarkDuplicates	Read   116,000,000 records.  Elapsed time: 00:03:42s.  Time for last 1,000,000:    1s.  Last read position: chr3:72,998,099
INFO	2026-06-08 08:44:19	MarkDuplicates	Tracking 1768606 as yet unmatched pairs. 42219 records in RAM.
INFO	2026-06-08 08:44:21	MarkDuplicates	Read   117,000,000 records.  Elapsed time: 00:03:44s.  Time for last 1,000,000:    1s.  Last read position: chr3:101,659,940
INFO	2026-06-08 08:44:21	MarkDuplicates	Tracking 1765667 as yet unmatched pairs. 39264 records in RAM.
INFO	2026-06-08 08:44:22	MarkDuplicates	Read   118,000,000 records.  Elapsed time: 00:03:46s.  Time for last 1,000,000:    1s.  Last read position: chr3:117,026,940
INFO	2026-06-08 08:44:22	MarkDuplicates	Tracking 1762756 as yet unmatched pairs. 36331 records in RAM.
INFO	2026-06-08 08:44:24	MarkDuplicates	Read   119,000,000 records.  Elapsed time: 00:03:48s.  Time for last 1,000,000:    1s.  Last read position: chr3:123,649,026
INFO	2026-06-08 08:44:24	MarkDuplicates	Tracking 1759934 as yet unmatched pairs. 33498 records in RAM.
INFO	2026-06-08 08:44:26	MarkDuplicates	Read   120,000,000 records.  Elapsed time: 00:03:50s.  Time for last 1,000,000:    2s.  Last read position: chr3:127,014,740
INFO	2026-06-08 08:44:26	MarkDuplicates	Tracking 1756368 as yet unmatched pairs. 29919 records in RAM.
INFO	2026-06-08 08:44:28	MarkDuplicates	Read   121,000,000 records.  Elapsed time: 00:03:52s.  Time for last 1,000,000:    1s.  Last read position: chr3:129,571,075
INFO	2026-06-08 08:44:28	MarkDuplicates	Tracking 1752842 as yet unmatched pairs. 26369 records in RAM.
INFO	2026-06-08 08:44:30	MarkDuplicates	Read   122,000,000 records.  Elapsed time: 00:03:54s.  Time for last 1,000,000:    1s.  Last read position: chr3:141,443,479
INFO	2026-06-08 08:44:30	MarkDuplicates	Tracking 1749621 as yet unmatched pairs. 23135 records in RAM.
INFO	2026-06-08 08:44:32	MarkDuplicates	Read   123,000,000 records.  Elapsed time: 00:03:56s.  Time for last 1,000,000:    2s.  Last read position: chr3:152,445,348
INFO	2026-06-08 08:44:32	MarkDuplicates	Tracking 1746422 as yet unmatched pairs. 19927 records in RAM.
INFO	2026-06-08 08:44:34	MarkDuplicates	Read   124,000,000 records.  Elapsed time: 00:03:57s.  Time for last 1,000,000:    1s.  Last read position: chr3:170,360,404
INFO	2026-06-08 08:44:34	MarkDuplicates	Tracking 1743538 as yet unmatched pairs. 17034 records in RAM.
INFO	2026-06-08 08:44:36	MarkDuplicates	Read   125,000,000 records.  Elapsed time: 00:03:59s.  Time for last 1,000,000:    1s.  Last read position: chr3:184,177,003
INFO	2026-06-08 08:44:36	MarkDuplicates	Tracking 1740570 as yet unmatched pairs. 14043 records in RAM.
INFO	2026-06-08 08:44:37	MarkDuplicates	Read   126,000,000 records.  Elapsed time: 00:04:01s.  Time for last 1,000,000:    1s.  Last read position: chr3:185,491,529
INFO	2026-06-08 08:44:37	MarkDuplicates	Tracking 1737086 as yet unmatched pairs. 10550 records in RAM.
INFO	2026-06-08 08:44:39	MarkDuplicates	Read   127,000,000 records.  Elapsed time: 00:04:02s.  Time for last 1,000,000:    1s.  Last read position: chr3:188,609,464
INFO	2026-06-08 08:44:39	MarkDuplicates	Tracking 1734779 as yet unmatched pairs. 8231 records in RAM.
INFO	2026-06-08 08:44:40	MarkDuplicates	Read   128,000,000 records.  Elapsed time: 00:04:04s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,725,160
INFO	2026-06-08 08:44:40	MarkDuplicates	Tracking 1731836 as yet unmatched pairs. 5282 records in RAM.
INFO	2026-06-08 08:44:41	MarkDuplicates	Read   129,000,000 records.  Elapsed time: 00:04:05s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,781,555
INFO	2026-06-08 08:44:41	MarkDuplicates	Tracking 1731127 as yet unmatched pairs. 4564 records in RAM.
INFO	2026-06-08 08:44:43	MarkDuplicates	Read   130,000,000 records.  Elapsed time: 00:04:06s.  Time for last 1,000,000:    1s.  Last read position: chr3:196,075,321
INFO	2026-06-08 08:44:43	MarkDuplicates	Tracking 1728244 as yet unmatched pairs. 1676 records in RAM.
INFO	2026-06-08 08:44:45	MarkDuplicates	Read   131,000,000 records.  Elapsed time: 00:04:09s.  Time for last 1,000,000:    2s.  Last read position: chr4:1,171,086
INFO	2026-06-08 08:44:45	MarkDuplicates	Tracking 1724813 as yet unmatched pairs. 48543 records in RAM.
INFO	2026-06-08 08:44:47	MarkDuplicates	Read   132,000,000 records.  Elapsed time: 00:04:10s.  Time for last 1,000,000:    1s.  Last read position: chr4:2,625,299
INFO	2026-06-08 08:44:47	MarkDuplicates	Tracking 1720527 as yet unmatched pairs. 44245 records in RAM.
INFO	2026-06-08 08:44:48	MarkDuplicates	Read   133,000,000 records.  Elapsed time: 00:04:12s.  Time for last 1,000,000:    1s.  Last read position: chr4:7,763,682
INFO	2026-06-08 08:44:48	MarkDuplicates	Tracking 1717111 as yet unmatched pairs. 40820 records in RAM.
INFO	2026-06-08 08:44:49	MarkDuplicates	Read   134,000,000 records.  Elapsed time: 00:04:13s.  Time for last 1,000,000:    1s.  Last read position: chr4:24,540,273
INFO	2026-06-08 08:44:49	MarkDuplicates	Tracking 1713874 as yet unmatched pairs. 37543 records in RAM.
INFO	2026-06-08 08:44:51	MarkDuplicates	Read   135,000,000 records.  Elapsed time: 00:04:15s.  Time for last 1,000,000:    1s.  Last read position: chr4:41,014,185
INFO	2026-06-08 08:44:51	MarkDuplicates	Tracking 1710563 as yet unmatched pairs. 34221 records in RAM.
INFO	2026-06-08 08:44:53	MarkDuplicates	Read   136,000,000 records.  Elapsed time: 00:04:17s.  Time for last 1,000,000:    1s.  Last read position: chr4:56,930,898
INFO	2026-06-08 08:44:53	MarkDuplicates	Tracking 1707807 as yet unmatched pairs. 31446 records in RAM.
INFO	2026-06-08 08:44:54	MarkDuplicates	Read   137,000,000 records.  Elapsed time: 00:04:18s.  Time for last 1,000,000:    1s.  Last read position: chr4:74,445,348
INFO	2026-06-08 08:44:54	MarkDuplicates	Tracking 1704963 as yet unmatched pairs. 28582 records in RAM.
INFO	2026-06-08 08:44:56	MarkDuplicates	Read   138,000,000 records.  Elapsed time: 00:04:19s.  Time for last 1,000,000:    1s.  Last read position: chr4:78,601,557
INFO	2026-06-08 08:44:56	MarkDuplicates	Tracking 1701033 as yet unmatched pairs. 24624 records in RAM.
INFO	2026-06-08 08:44:57	MarkDuplicates	Read   139,000,000 records.  Elapsed time: 00:04:21s.  Time for last 1,000,000:    1s.  Last read position: chr4:87,982,792
INFO	2026-06-08 08:44:57	MarkDuplicates	Tracking 1698108 as yet unmatched pairs. 21681 records in RAM.
INFO	2026-06-08 08:44:59	MarkDuplicates	Read   140,000,000 records.  Elapsed time: 00:04:23s.  Time for last 1,000,000:    1s.  Last read position: chr4:108,014,429
INFO	2026-06-08 08:44:59	MarkDuplicates	Tracking 1695246 as yet unmatched pairs. 18799 records in RAM.
INFO	2026-06-08 08:45:00	MarkDuplicates	Read   141,000,000 records.  Elapsed time: 00:04:24s.  Time for last 1,000,000:    1s.  Last read position: chr4:119,031,100
INFO	2026-06-08 08:45:00	MarkDuplicates	Tracking 1693383 as yet unmatched pairs. 16931 records in RAM.
INFO	2026-06-08 08:45:02	MarkDuplicates	Read   142,000,000 records.  Elapsed time: 00:04:26s.  Time for last 1,000,000:    1s.  Last read position: chr4:127,812,851
INFO	2026-06-08 08:45:02	MarkDuplicates	Tracking 1689518 as yet unmatched pairs. 13061 records in RAM.
INFO	2026-06-08 08:45:03	MarkDuplicates	Read   143,000,000 records.  Elapsed time: 00:04:27s.  Time for last 1,000,000:    1s.  Last read position: chr4:148,435,776
INFO	2026-06-08 08:45:03	MarkDuplicates	Tracking 1686756 as yet unmatched pairs. 10265 records in RAM.
INFO	2026-06-08 08:45:05	MarkDuplicates	Read   144,000,000 records.  Elapsed time: 00:04:29s.  Time for last 1,000,000:    1s.  Last read position: chr4:155,710,665
INFO	2026-06-08 08:45:05	MarkDuplicates	Tracking 1683792 as yet unmatched pairs. 7282 records in RAM.
INFO	2026-06-08 08:45:07	MarkDuplicates	Read   145,000,000 records.  Elapsed time: 00:04:30s.  Time for last 1,000,000:    1s.  Last read position: chr4:173,317,690
INFO	2026-06-08 08:45:07	MarkDuplicates	Tracking 1680408 as yet unmatched pairs. 3889 records in RAM.
INFO	2026-06-08 08:45:08	MarkDuplicates	Read   146,000,000 records.  Elapsed time: 00:04:32s.  Time for last 1,000,000:    1s.  Last read position: chr4:186,636,779
INFO	2026-06-08 08:45:08	MarkDuplicates	Tracking 1677888 as yet unmatched pairs. 1355 records in RAM.
INFO	2026-06-08 08:45:10	MarkDuplicates	Read   147,000,000 records.  Elapsed time: 00:04:34s.  Time for last 1,000,000:    2s.  Last read position: chr5:6,752,929
INFO	2026-06-08 08:45:10	MarkDuplicates	Tracking 1673765 as yet unmatched pairs. 76960 records in RAM.
INFO	2026-06-08 08:45:12	MarkDuplicates	Read   148,000,000 records.  Elapsed time: 00:04:36s.  Time for last 1,000,000:    1s.  Last read position: chr5:14,462,753
INFO	2026-06-08 08:45:12	MarkDuplicates	Tracking 1670430 as yet unmatched pairs. 73610 records in RAM.
INFO	2026-06-08 08:45:13	MarkDuplicates	Read   149,000,000 records.  Elapsed time: 00:04:37s.  Time for last 1,000,000:    1s.  Last read position: chr5:32,586,408
INFO	2026-06-08 08:45:13	MarkDuplicates	Tracking 1667216 as yet unmatched pairs. 70388 records in RAM.
INFO	2026-06-08 08:45:15	MarkDuplicates	Read   150,000,000 records.  Elapsed time: 00:04:38s.  Time for last 1,000,000:    1s.  Last read position: chr5:50,841,966
INFO	2026-06-08 08:45:15	MarkDuplicates	Tracking 1664245 as yet unmatched pairs. 67410 records in RAM.
INFO	2026-06-08 08:45:17	MarkDuplicates	Read   151,000,000 records.  Elapsed time: 00:04:41s.  Time for last 1,000,000:    2s.  Last read position: chr5:69,177,238
INFO	2026-06-08 08:45:17	MarkDuplicates	Tracking 1661451 as yet unmatched pairs. 64579 records in RAM.
INFO	2026-06-08 08:45:19	MarkDuplicates	Read   152,000,000 records.  Elapsed time: 00:04:42s.  Time for last 1,000,000:    1s.  Last read position: chr5:74,636,203
INFO	2026-06-08 08:45:19	MarkDuplicates	Tracking 1659079 as yet unmatched pairs. 62203 records in RAM.
INFO	2026-06-08 08:45:20	MarkDuplicates	Read   153,000,000 records.  Elapsed time: 00:04:44s.  Time for last 1,000,000:    1s.  Last read position: chr5:82,276,472
INFO	2026-06-08 08:45:20	MarkDuplicates	Tracking 1659271 as yet unmatched pairs. 62378 records in RAM.
INFO	2026-06-08 08:45:22	MarkDuplicates	Read   154,000,000 records.  Elapsed time: 00:04:45s.  Time for last 1,000,000:    1s.  Last read position: chr5:96,767,979
INFO	2026-06-08 08:45:22	MarkDuplicates	Tracking 1653064 as yet unmatched pairs. 56152 records in RAM.
INFO	2026-06-08 08:45:23	MarkDuplicates	Read   155,000,000 records.  Elapsed time: 00:04:47s.  Time for last 1,000,000:    1s.  Last read position: chr5:123,036,561
INFO	2026-06-08 08:45:23	MarkDuplicates	Tracking 1650097 as yet unmatched pairs. 53160 records in RAM.
INFO	2026-06-08 08:45:25	MarkDuplicates	Read   156,000,000 records.  Elapsed time: 00:04:49s.  Time for last 1,000,000:    1s.  Last read position: chr5:132,486,252
INFO	2026-06-08 08:45:25	MarkDuplicates	Tracking 1646889 as yet unmatched pairs. 49941 records in RAM.
INFO	2026-06-08 08:45:27	MarkDuplicates	Read   157,000,000 records.  Elapsed time: 00:04:51s.  Time for last 1,000,000:    2s.  Last read position: chr5:135,369,467
INFO	2026-06-08 08:45:27	MarkDuplicates	Tracking 1643388 as yet unmatched pairs. 46428 records in RAM.
INFO	2026-06-08 08:45:29	MarkDuplicates	Read   158,000,000 records.  Elapsed time: 00:04:52s.  Time for last 1,000,000:    1s.  Last read position: chr5:138,511,124
INFO	2026-06-08 08:45:29	MarkDuplicates	Tracking 1639934 as yet unmatched pairs. 42963 records in RAM.
INFO	2026-06-08 08:45:30	MarkDuplicates	Read   159,000,000 records.  Elapsed time: 00:04:54s.  Time for last 1,000,000:    1s.  Last read position: chr5:140,668,667
INFO	2026-06-08 08:45:30	MarkDuplicates	Tracking 1636693 as yet unmatched pairs. 39644 records in RAM.
INFO	2026-06-08 08:45:32	MarkDuplicates	Read   160,000,000 records.  Elapsed time: 00:04:56s.  Time for last 1,000,000:    1s.  Last read position: chr5:141,649,172
INFO	2026-06-08 08:45:32	MarkDuplicates	Tracking 1633485 as yet unmatched pairs. 36428 records in RAM.
INFO	2026-06-08 08:45:34	MarkDuplicates	Read   161,000,000 records.  Elapsed time: 00:04:57s.  Time for last 1,000,000:    1s.  Last read position: chr5:148,827,311
INFO	2026-06-08 08:45:34	MarkDuplicates	Tracking 1630295 as yet unmatched pairs. 33215 records in RAM.
INFO	2026-06-08 08:45:35	MarkDuplicates	Read   162,000,000 records.  Elapsed time: 00:04:59s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,392,098
INFO	2026-06-08 08:45:35	MarkDuplicates	Tracking 1627010 as yet unmatched pairs. 29920 records in RAM.
INFO	2026-06-08 08:45:37	MarkDuplicates	Read   163,000,000 records.  Elapsed time: 00:05:01s.  Time for last 1,000,000:    1s.  Last read position: chr5:151,049,852
INFO	2026-06-08 08:45:37	MarkDuplicates	Tracking 1623487 as yet unmatched pairs. 26389 records in RAM.
INFO	2026-06-08 08:45:39	MarkDuplicates	Read   164,000,000 records.  Elapsed time: 00:05:02s.  Time for last 1,000,000:    1s.  Last read position: chr5:160,051,141
INFO	2026-06-08 08:45:39	MarkDuplicates	Tracking 1620249 as yet unmatched pairs. 23135 records in RAM.
INFO	2026-06-08 08:45:40	MarkDuplicates	Read   165,000,000 records.  Elapsed time: 00:05:04s.  Time for last 1,000,000:    1s.  Last read position: chr5:171,391,412
INFO	2026-06-08 08:45:40	MarkDuplicates	Tracking 1619258 as yet unmatched pairs. 22136 records in RAM.
INFO	2026-06-08 08:45:42	MarkDuplicates	Read   166,000,000 records.  Elapsed time: 00:05:06s.  Time for last 1,000,000:    1s.  Last read position: chr5:172,770,841
INFO	2026-06-08 08:45:42	MarkDuplicates	Tracking 1614821 as yet unmatched pairs. 17693 records in RAM.
INFO	2026-06-08 08:45:44	MarkDuplicates	Read   167,000,000 records.  Elapsed time: 00:05:07s.  Time for last 1,000,000:    1s.  Last read position: chr5:177,371,956
INFO	2026-06-08 08:45:44	MarkDuplicates	Tracking 1611457 as yet unmatched pairs. 14318 records in RAM.
INFO	2026-06-08 08:45:45	MarkDuplicates	Read   168,000,000 records.  Elapsed time: 00:05:09s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,601,909
INFO	2026-06-08 08:45:45	MarkDuplicates	Tracking 1607630 as yet unmatched pairs. 10484 records in RAM.
INFO	2026-06-08 08:45:47	MarkDuplicates	Read   169,000,000 records.  Elapsed time: 00:05:10s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,821,087
INFO	2026-06-08 08:45:47	MarkDuplicates	Tracking 1607027 as yet unmatched pairs. 9875 records in RAM.
INFO	2026-06-08 08:45:48	MarkDuplicates	Read   170,000,000 records.  Elapsed time: 00:05:12s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,869,823
INFO	2026-06-08 08:45:48	MarkDuplicates	Tracking 1600435 as yet unmatched pairs. 3277 records in RAM.
INFO	2026-06-08 08:45:51	MarkDuplicates	Read   171,000,000 records.  Elapsed time: 00:05:14s.  Time for last 1,000,000:    2s.  Last read position: chr6:1,312,761
INFO	2026-06-08 08:45:51	MarkDuplicates	Tracking 1597019 as yet unmatched pairs. 91648 records in RAM.
INFO	2026-06-08 08:45:52	MarkDuplicates	Read   172,000,000 records.  Elapsed time: 00:05:16s.  Time for last 1,000,000:    1s.  Last read position: chr6:7,231,710
INFO	2026-06-08 08:45:52	MarkDuplicates	Tracking 1593760 as yet unmatched pairs. 88374 records in RAM.
INFO	2026-06-08 08:45:54	MarkDuplicates	Read   173,000,000 records.  Elapsed time: 00:05:18s.  Time for last 1,000,000:    1s.  Last read position: chr6:16,130,671
INFO	2026-06-08 08:45:54	MarkDuplicates	Tracking 1589879 as yet unmatched pairs. 84480 records in RAM.
INFO	2026-06-08 08:45:56	MarkDuplicates	Read   174,000,000 records.  Elapsed time: 00:05:19s.  Time for last 1,000,000:    1s.  Last read position: chr6:26,031,643
INFO	2026-06-08 08:45:56	MarkDuplicates	Tracking 1586733 as yet unmatched pairs. 81307 records in RAM.
INFO	2026-06-08 08:45:57	MarkDuplicates	Read   175,000,000 records.  Elapsed time: 00:05:21s.  Time for last 1,000,000:    1s.  Last read position: chr6:27,146,440
INFO	2026-06-08 08:45:57	MarkDuplicates	Tracking 1583538 as yet unmatched pairs. 78106 records in RAM.
INFO	2026-06-08 08:45:59	MarkDuplicates	Read   176,000,000 records.  Elapsed time: 00:05:22s.  Time for last 1,000,000:    1s.  Last read position: chr6:29,942,831
INFO	2026-06-08 08:45:59	MarkDuplicates	Tracking 1580355 as yet unmatched pairs. 74919 records in RAM.
INFO	2026-06-08 08:46:00	MarkDuplicates	Read   177,000,000 records.  Elapsed time: 00:05:24s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,744,022
INFO	2026-06-08 08:46:00	MarkDuplicates	Tracking 1576854 as yet unmatched pairs. 71406 records in RAM.
INFO	2026-06-08 08:46:02	MarkDuplicates	Read   178,000,000 records.  Elapsed time: 00:05:26s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,623,865
INFO	2026-06-08 08:46:02	MarkDuplicates	Tracking 1573172 as yet unmatched pairs. 67714 records in RAM.
INFO	2026-06-08 08:46:03	MarkDuplicates	Read   179,000,000 records.  Elapsed time: 00:05:27s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,732,244
INFO	2026-06-08 08:46:03	MarkDuplicates	Tracking 1570007 as yet unmatched pairs. 64546 records in RAM.
INFO	2026-06-08 08:46:05	MarkDuplicates	Read   180,000,000 records.  Elapsed time: 00:05:29s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,829,104
INFO	2026-06-08 08:46:05	MarkDuplicates	Tracking 1568354 as yet unmatched pairs. 62890 records in RAM.
INFO	2026-06-08 08:46:06	MarkDuplicates	Read   181,000,000 records.  Elapsed time: 00:05:30s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,026,929
INFO	2026-06-08 08:46:06	MarkDuplicates	Tracking 1565068 as yet unmatched pairs. 59603 records in RAM.
INFO	2026-06-08 08:46:08	MarkDuplicates	Read   182,000,000 records.  Elapsed time: 00:05:32s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,978,232
INFO	2026-06-08 08:46:08	MarkDuplicates	Tracking 1561487 as yet unmatched pairs. 56021 records in RAM.
INFO	2026-06-08 08:46:10	MarkDuplicates	Read   183,000,000 records.  Elapsed time: 00:05:34s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,417,291
INFO	2026-06-08 08:46:10	MarkDuplicates	Tracking 1558273 as yet unmatched pairs. 52800 records in RAM.
INFO	2026-06-08 08:46:11	MarkDuplicates	Read   184,000,000 records.  Elapsed time: 00:05:35s.  Time for last 1,000,000:    1s.  Last read position: chr6:35,468,422
INFO	2026-06-08 08:46:11	MarkDuplicates	Tracking 1554696 as yet unmatched pairs. 49206 records in RAM.
INFO	2026-06-08 08:46:13	MarkDuplicates	Read   185,000,000 records.  Elapsed time: 00:05:37s.  Time for last 1,000,000:    1s.  Last read position: chr6:41,598,787
INFO	2026-06-08 08:46:13	MarkDuplicates	Tracking 1551219 as yet unmatched pairs. 45717 records in RAM.
INFO	2026-06-08 08:46:15	MarkDuplicates	Read   186,000,000 records.  Elapsed time: 00:05:38s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,354,731
INFO	2026-06-08 08:46:15	MarkDuplicates	Tracking 1547554 as yet unmatched pairs. 42044 records in RAM.
INFO	2026-06-08 08:46:16	MarkDuplicates	Read   187,000,000 records.  Elapsed time: 00:05:40s.  Time for last 1,000,000:    1s.  Last read position: chr6:46,140,110
INFO	2026-06-08 08:46:16	MarkDuplicates	Tracking 1544018 as yet unmatched pairs. 38501 records in RAM.
INFO	2026-06-08 08:46:17	MarkDuplicates	Read   188,000,000 records.  Elapsed time: 00:05:41s.  Time for last 1,000,000:    1s.  Last read position: chr6:56,605,349
INFO	2026-06-08 08:46:17	MarkDuplicates	Tracking 1541440 as yet unmatched pairs. 35881 records in RAM.
INFO	2026-06-08 08:46:19	MarkDuplicates	Read   189,000,000 records.  Elapsed time: 00:05:43s.  Time for last 1,000,000:    1s.  Last read position: chr6:75,165,666
INFO	2026-06-08 08:46:19	MarkDuplicates	Tracking 1538466 as yet unmatched pairs. 32894 records in RAM.
INFO	2026-06-08 08:46:21	MarkDuplicates	Read   190,000,000 records.  Elapsed time: 00:05:45s.  Time for last 1,000,000:    1s.  Last read position: chr6:87,518,179
INFO	2026-06-08 08:46:21	MarkDuplicates	Tracking 1535618 as yet unmatched pairs. 30034 records in RAM.
INFO	2026-06-08 08:46:22	MarkDuplicates	Read   191,000,000 records.  Elapsed time: 00:05:46s.  Time for last 1,000,000:    1s.  Last read position: chr6:106,974,632
INFO	2026-06-08 08:46:23	MarkDuplicates	Tracking 1532339 as yet unmatched pairs. 26735 records in RAM.
INFO	2026-06-08 08:46:24	MarkDuplicates	Read   192,000,000 records.  Elapsed time: 00:05:48s.  Time for last 1,000,000:    1s.  Last read position: chr6:113,941,062
INFO	2026-06-08 08:46:24	MarkDuplicates	Tracking 1529158 as yet unmatched pairs. 23549 records in RAM.
INFO	2026-06-08 08:46:26	MarkDuplicates	Read   193,000,000 records.  Elapsed time: 00:05:49s.  Time for last 1,000,000:    1s.  Last read position: chr6:130,870,037
INFO	2026-06-08 08:46:26	MarkDuplicates	Tracking 1526148 as yet unmatched pairs. 20524 records in RAM.
INFO	2026-06-08 08:46:27	MarkDuplicates	Read   194,000,000 records.  Elapsed time: 00:05:51s.  Time for last 1,000,000:    1s.  Last read position: chr6:137,206,216
INFO	2026-06-08 08:46:27	MarkDuplicates	Tracking 1523151 as yet unmatched pairs. 17516 records in RAM.
INFO	2026-06-08 08:46:29	MarkDuplicates	Read   195,000,000 records.  Elapsed time: 00:05:52s.  Time for last 1,000,000:    1s.  Last read position: chr6:147,359,293
INFO	2026-06-08 08:46:29	MarkDuplicates	Tracking 1519683 as yet unmatched pairs. 14041 records in RAM.
INFO	2026-06-08 08:46:30	MarkDuplicates	Read   196,000,000 records.  Elapsed time: 00:05:54s.  Time for last 1,000,000:    1s.  Last read position: chr6:152,331,075
INFO	2026-06-08 08:46:30	MarkDuplicates	Tracking 1516486 as yet unmatched pairs. 10809 records in RAM.
INFO	2026-06-08 08:46:32	MarkDuplicates	Read   197,000,000 records.  Elapsed time: 00:05:56s.  Time for last 1,000,000:    1s.  Last read position: chr6:158,767,323
INFO	2026-06-08 08:46:32	MarkDuplicates	Tracking 1514660 as yet unmatched pairs. 8963 records in RAM.
INFO	2026-06-08 08:46:33	MarkDuplicates	Read   198,000,000 records.  Elapsed time: 00:05:57s.  Time for last 1,000,000:    1s.  Last read position: chr6:160,089,149
INFO	2026-06-08 08:46:33	MarkDuplicates	Tracking 1509350 as yet unmatched pairs. 3642 records in RAM.
INFO	2026-06-08 08:46:35	MarkDuplicates	Read   199,000,000 records.  Elapsed time: 00:05:58s.  Time for last 1,000,000:    1s.  Last read position: chr6:170,535,318
INFO	2026-06-08 08:46:35	MarkDuplicates	Tracking 1506114 as yet unmatched pairs. 391 records in RAM.
INFO	2026-06-08 08:46:38	MarkDuplicates	Read   200,000,000 records.  Elapsed time: 00:06:02s.  Time for last 1,000,000:    3s.  Last read position: chr7:1,444,980
INFO	2026-06-08 08:46:38	MarkDuplicates	Tracking 1503636 as yet unmatched pairs. 164808 records in RAM.
INFO	2026-06-08 08:46:40	MarkDuplicates	Read   201,000,000 records.  Elapsed time: 00:06:03s.  Time for last 1,000,000:    1s.  Last read position: chr7:2,379,167
INFO	2026-06-08 08:46:40	MarkDuplicates	Tracking 1497466 as yet unmatched pairs. 158612 records in RAM.
INFO	2026-06-08 08:46:41	MarkDuplicates	Read   202,000,000 records.  Elapsed time: 00:06:05s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,312,750
INFO	2026-06-08 08:46:41	MarkDuplicates	Tracking 1493527 as yet unmatched pairs. 154667 records in RAM.
INFO	2026-06-08 08:46:43	MarkDuplicates	Read   203,000,000 records.  Elapsed time: 00:06:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,377,945
INFO	2026-06-08 08:46:43	MarkDuplicates	Tracking 1489245 as yet unmatched pairs. 150377 records in RAM.
INFO	2026-06-08 08:46:44	MarkDuplicates	Read   204,000,000 records.  Elapsed time: 00:06:08s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,528,082
INFO	2026-06-08 08:46:44	MarkDuplicates	Tracking 1489207 as yet unmatched pairs. 150325 records in RAM.
INFO	2026-06-08 08:46:46	MarkDuplicates	Read   205,000,000 records.  Elapsed time: 00:06:10s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,529,536
INFO	2026-06-08 08:46:46	MarkDuplicates	Tracking 1484691 as yet unmatched pairs. 145799 records in RAM.
INFO	2026-06-08 08:46:47	MarkDuplicates	Read   206,000,000 records.  Elapsed time: 00:06:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:6,653,306
INFO	2026-06-08 08:46:47	MarkDuplicates	Tracking 1477543 as yet unmatched pairs. 138639 records in RAM.
INFO	2026-06-08 08:46:49	MarkDuplicates	Read   207,000,000 records.  Elapsed time: 00:06:13s.  Time for last 1,000,000:    1s.  Last read position: chr7:17,340,094
INFO	2026-06-08 08:46:49	MarkDuplicates	Tracking 1474433 as yet unmatched pairs. 135520 records in RAM.
INFO	2026-06-08 08:46:51	MarkDuplicates	Read   208,000,000 records.  Elapsed time: 00:06:14s.  Time for last 1,000,000:    1s.  Last read position: chr7:26,197,662
INFO	2026-06-08 08:46:51	MarkDuplicates	Tracking 1473311 as yet unmatched pairs. 134387 records in RAM.
INFO	2026-06-08 08:46:52	MarkDuplicates	Read   209,000,000 records.  Elapsed time: 00:06:16s.  Time for last 1,000,000:    1s.  Last read position: chr7:30,633,764
INFO	2026-06-08 08:46:52	MarkDuplicates	Tracking 1468075 as yet unmatched pairs. 129133 records in RAM.
INFO	2026-06-08 08:46:54	MarkDuplicates	Read   210,000,000 records.  Elapsed time: 00:06:17s.  Time for last 1,000,000:    1s.  Last read position: chr7:40,094,757
INFO	2026-06-08 08:46:54	MarkDuplicates	Tracking 1464717 as yet unmatched pairs. 125770 records in RAM.
INFO	2026-06-08 08:46:56	MarkDuplicates	Read   211,000,000 records.  Elapsed time: 00:06:19s.  Time for last 1,000,000:    2s.  Last read position: chr7:44,115,877
INFO	2026-06-08 08:46:56	MarkDuplicates	Tracking 1461910 as yet unmatched pairs. 122960 records in RAM.
INFO	2026-06-08 08:46:57	MarkDuplicates	Read   212,000,000 records.  Elapsed time: 00:06:21s.  Time for last 1,000,000:    1s.  Last read position: chr7:45,100,365
INFO	2026-06-08 08:46:57	MarkDuplicates	Tracking 1458185 as yet unmatched pairs. 119228 records in RAM.
INFO	2026-06-08 08:46:59	MarkDuplicates	Read   213,000,000 records.  Elapsed time: 00:06:23s.  Time for last 1,000,000:    1s.  Last read position: chr7:55,181,329
INFO	2026-06-08 08:46:59	MarkDuplicates	Tracking 1454428 as yet unmatched pairs. 115457 records in RAM.
INFO	2026-06-08 08:47:01	MarkDuplicates	Read   214,000,000 records.  Elapsed time: 00:06:25s.  Time for last 1,000,000:    1s.  Last read position: chr7:66,771,936
INFO	2026-06-08 08:47:01	MarkDuplicates	Tracking 1450961 as yet unmatched pairs. 111962 records in RAM.
INFO	2026-06-08 08:47:03	MarkDuplicates	Read   215,000,000 records.  Elapsed time: 00:06:27s.  Time for last 1,000,000:    1s.  Last read position: chr7:72,999,734
INFO	2026-06-08 08:47:03	MarkDuplicates	Tracking 1448761 as yet unmatched pairs. 109759 records in RAM.
INFO	2026-06-08 08:47:04	MarkDuplicates	Read   216,000,000 records.  Elapsed time: 00:06:28s.  Time for last 1,000,000:    1s.  Last read position: chr7:73,596,574
INFO	2026-06-08 08:47:04	MarkDuplicates	Tracking 1447387 as yet unmatched pairs. 108379 records in RAM.
INFO	2026-06-08 08:47:06	MarkDuplicates	Read   217,000,000 records.  Elapsed time: 00:06:30s.  Time for last 1,000,000:    1s.  Last read position: chr7:74,066,763
INFO	2026-06-08 08:47:06	MarkDuplicates	Tracking 1443219 as yet unmatched pairs. 104195 records in RAM.
INFO	2026-06-08 08:47:08	MarkDuplicates	Read   218,000,000 records.  Elapsed time: 00:06:31s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,197,017
INFO	2026-06-08 08:47:08	MarkDuplicates	Tracking 1440469 as yet unmatched pairs. 101429 records in RAM.
INFO	2026-06-08 08:47:09	MarkDuplicates	Read   219,000,000 records.  Elapsed time: 00:06:33s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,981,587
INFO	2026-06-08 08:47:09	MarkDuplicates	Tracking 1438454 as yet unmatched pairs. 99406 records in RAM.
INFO	2026-06-08 08:47:11	MarkDuplicates	Read   220,000,000 records.  Elapsed time: 00:06:34s.  Time for last 1,000,000:    1s.  Last read position: chr7:76,329,755
INFO	2026-06-08 08:47:11	MarkDuplicates	Tracking 1434250 as yet unmatched pairs. 95196 records in RAM.
INFO	2026-06-08 08:47:12	MarkDuplicates	Read   221,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    1s.  Last read position: chr7:77,311,303
INFO	2026-06-08 08:47:12	MarkDuplicates	Tracking 1431677 as yet unmatched pairs. 92607 records in RAM.
INFO	2026-06-08 08:47:14	MarkDuplicates	Read   222,000,000 records.  Elapsed time: 00:06:37s.  Time for last 1,000,000:    1s.  Last read position: chr7:92,029,902
INFO	2026-06-08 08:47:14	MarkDuplicates	Tracking 1429452 as yet unmatched pairs. 90371 records in RAM.
INFO	2026-06-08 08:47:15	MarkDuplicates	Read   223,000,000 records.  Elapsed time: 00:06:39s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,394,977
INFO	2026-06-08 08:47:15	MarkDuplicates	Tracking 1426940 as yet unmatched pairs. 87851 records in RAM.
INFO	2026-06-08 08:47:17	MarkDuplicates	Read   224,000,000 records.  Elapsed time: 00:06:41s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,421,024
INFO	2026-06-08 08:47:17	MarkDuplicates	Tracking 1422921 as yet unmatched pairs. 83830 records in RAM.
INFO	2026-06-08 08:47:19	MarkDuplicates	Read   225,000,000 records.  Elapsed time: 00:06:42s.  Time for last 1,000,000:    1s.  Last read position: chr7:98,293,584
INFO	2026-06-08 08:47:19	MarkDuplicates	Tracking 1419178 as yet unmatched pairs. 80084 records in RAM.
INFO	2026-06-08 08:47:20	MarkDuplicates	Read   226,000,000 records.  Elapsed time: 00:06:44s.  Time for last 1,000,000:    1s.  Last read position: chr7:99,479,707
INFO	2026-06-08 08:47:20	MarkDuplicates	Tracking 1415665 as yet unmatched pairs. 76565 records in RAM.
INFO	2026-06-08 08:47:22	MarkDuplicates	Read   227,000,000 records.  Elapsed time: 00:06:46s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,166,628
INFO	2026-06-08 08:47:22	MarkDuplicates	Tracking 1412425 as yet unmatched pairs. 73303 records in RAM.
INFO	2026-06-08 08:47:24	MarkDuplicates	Read   228,000,000 records.  Elapsed time: 00:06:47s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,603,975
INFO	2026-06-08 08:47:24	MarkDuplicates	Tracking 1408701 as yet unmatched pairs. 69576 records in RAM.
INFO	2026-06-08 08:47:25	MarkDuplicates	Read   229,000,000 records.  Elapsed time: 00:06:49s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,867,486
INFO	2026-06-08 08:47:25	MarkDuplicates	Tracking 1405235 as yet unmatched pairs. 66100 records in RAM.
INFO	2026-06-08 08:47:27	MarkDuplicates	Read   230,000,000 records.  Elapsed time: 00:06:50s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,993,934
INFO	2026-06-08 08:47:27	MarkDuplicates	Tracking 1402621 as yet unmatched pairs. 63483 records in RAM.
INFO	2026-06-08 08:47:28	MarkDuplicates	Read   231,000,000 records.  Elapsed time: 00:06:52s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,996,670
INFO	2026-06-08 08:47:28	MarkDuplicates	Tracking 1402379 as yet unmatched pairs. 63241 records in RAM.
INFO	2026-06-08 08:47:29	MarkDuplicates	Read   232,000,000 records.  Elapsed time: 00:06:53s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,998,569
INFO	2026-06-08 08:47:29	MarkDuplicates	Tracking 1400774 as yet unmatched pairs. 61635 records in RAM.
INFO	2026-06-08 08:47:30	MarkDuplicates	Read   233,000,000 records.  Elapsed time: 00:06:54s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,000,756
INFO	2026-06-08 08:47:30	MarkDuplicates	Tracking 1400498 as yet unmatched pairs. 61350 records in RAM.
INFO	2026-06-08 08:47:31	MarkDuplicates	Read   234,000,000 records.  Elapsed time: 00:06:55s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,002,984
INFO	2026-06-08 08:47:31	MarkDuplicates	Tracking 1399159 as yet unmatched pairs. 60007 records in RAM.
INFO	2026-06-08 08:47:33	MarkDuplicates	Read   235,000,000 records.  Elapsed time: 00:06:57s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,035,176
INFO	2026-06-08 08:47:33	MarkDuplicates	Tracking 1396898 as yet unmatched pairs. 57743 records in RAM.
INFO	2026-06-08 08:47:35	MarkDuplicates	Read   236,000,000 records.  Elapsed time: 00:06:59s.  Time for last 1,000,000:    1s.  Last read position: chr7:101,041,786
INFO	2026-06-08 08:47:35	MarkDuplicates	Tracking 1394102 as yet unmatched pairs. 54935 records in RAM.
INFO	2026-06-08 08:47:36	MarkDuplicates	Read   237,000,000 records.  Elapsed time: 00:07:00s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,119,081
INFO	2026-06-08 08:47:36	MarkDuplicates	Tracking 1390447 as yet unmatched pairs. 51264 records in RAM.
INFO	2026-06-08 08:47:38	MarkDuplicates	Read   238,000,000 records.  Elapsed time: 00:07:01s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,640,330
INFO	2026-06-08 08:47:38	MarkDuplicates	Tracking 1388527 as yet unmatched pairs. 49338 records in RAM.
INFO	2026-06-08 08:47:39	MarkDuplicates	Read   239,000,000 records.  Elapsed time: 00:07:03s.  Time for last 1,000,000:    1s.  Last read position: chr7:107,372,647
INFO	2026-06-08 08:47:39	MarkDuplicates	Tracking 1386161 as yet unmatched pairs. 46961 records in RAM.
INFO	2026-06-08 08:47:41	MarkDuplicates	Read   240,000,000 records.  Elapsed time: 00:07:04s.  Time for last 1,000,000:    1s.  Last read position: chr7:116,700,124
INFO	2026-06-08 08:47:41	MarkDuplicates	Tracking 1384534 as yet unmatched pairs. 45311 records in RAM.
INFO	2026-06-08 08:47:42	MarkDuplicates	Read   241,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:117,592,444
INFO	2026-06-08 08:47:42	MarkDuplicates	Tracking 1380554 as yet unmatched pairs. 41311 records in RAM.
INFO	2026-06-08 08:47:44	MarkDuplicates	Read   242,000,000 records.  Elapsed time: 00:07:07s.  Time for last 1,000,000:    1s.  Last read position: chr7:127,703,265
INFO	2026-06-08 08:47:44	MarkDuplicates	Tracking 1379546 as yet unmatched pairs. 40290 records in RAM.
INFO	2026-06-08 08:47:46	MarkDuplicates	Read   243,000,000 records.  Elapsed time: 00:07:09s.  Time for last 1,000,000:    1s.  Last read position: chr7:128,089,621
INFO	2026-06-08 08:47:46	MarkDuplicates	Tracking 1375859 as yet unmatched pairs. 36597 records in RAM.
INFO	2026-06-08 08:47:47	MarkDuplicates	Read   244,000,000 records.  Elapsed time: 00:07:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:128,878,565
INFO	2026-06-08 08:47:47	MarkDuplicates	Tracking 1370917 as yet unmatched pairs. 31645 records in RAM.
INFO	2026-06-08 08:47:49	MarkDuplicates	Read   245,000,000 records.  Elapsed time: 00:07:13s.  Time for last 1,000,000:    1s.  Last read position: chr7:134,933,862
INFO	2026-06-08 08:47:49	MarkDuplicates	Tracking 1367979 as yet unmatched pairs. 28690 records in RAM.
INFO	2026-06-08 08:47:51	MarkDuplicates	Read   246,000,000 records.  Elapsed time: 00:07:15s.  Time for last 1,000,000:    1s.  Last read position: chr7:138,580,615
INFO	2026-06-08 08:47:51	MarkDuplicates	Tracking 1365086 as yet unmatched pairs. 25783 records in RAM.
INFO	2026-06-08 08:47:53	MarkDuplicates	Read   247,000,000 records.  Elapsed time: 00:07:16s.  Time for last 1,000,000:    1s.  Last read position: chr7:140,054,690
INFO	2026-06-08 08:47:53	MarkDuplicates	Tracking 1361377 as yet unmatched pairs. 22068 records in RAM.
INFO	2026-06-08 08:47:55	MarkDuplicates	Read   248,000,000 records.  Elapsed time: 00:07:18s.  Time for last 1,000,000:    1s.  Last read position: chr7:143,382,294
INFO	2026-06-08 08:47:55	MarkDuplicates	Tracking 1358123 as yet unmatched pairs. 18810 records in RAM.
INFO	2026-06-08 08:47:56	MarkDuplicates	Read   249,000,000 records.  Elapsed time: 00:07:20s.  Time for last 1,000,000:    1s.  Last read position: chr7:144,283,865
INFO	2026-06-08 08:47:56	MarkDuplicates	Tracking 1356098 as yet unmatched pairs. 16784 records in RAM.
INFO	2026-06-08 08:47:57	MarkDuplicates	Read   250,000,000 records.  Elapsed time: 00:07:21s.  Time for last 1,000,000:    1s.  Last read position: chr7:148,800,563
INFO	2026-06-08 08:47:57	MarkDuplicates	Tracking 1354172 as yet unmatched pairs. 14848 records in RAM.
INFO	2026-06-08 08:47:59	MarkDuplicates	Read   251,000,000 records.  Elapsed time: 00:07:23s.  Time for last 1,000,000:    1s.  Last read position: chr7:150,372,731
INFO	2026-06-08 08:47:59	MarkDuplicates	Tracking 1350607 as yet unmatched pairs. 11274 records in RAM.
INFO	2026-06-08 08:48:01	MarkDuplicates	Read   252,000,000 records.  Elapsed time: 00:07:24s.  Time for last 1,000,000:    1s.  Last read position: chr7:151,138,142
INFO	2026-06-08 08:48:01	MarkDuplicates	Tracking 1346163 as yet unmatched pairs. 6825 records in RAM.
INFO	2026-06-08 08:48:02	MarkDuplicates	Read   253,000,000 records.  Elapsed time: 00:07:26s.  Time for last 1,000,000:    1s.  Last read position: chr7:154,975,814
INFO	2026-06-08 08:48:02	MarkDuplicates	Tracking 1342787 as yet unmatched pairs. 3439 records in RAM.
INFO	2026-06-08 08:48:05	MarkDuplicates	Read   254,000,000 records.  Elapsed time: 00:07:28s.  Time for last 1,000,000:    2s.  Last read position: chr8:3,538,914
INFO	2026-06-08 08:48:05	MarkDuplicates	Tracking 1339103 as yet unmatched pairs. 103670 records in RAM.
INFO	2026-06-08 08:48:06	MarkDuplicates	Read   255,000,000 records.  Elapsed time: 00:07:30s.  Time for last 1,000,000:    1s.  Last read position: chr8:22,116,375
INFO	2026-06-08 08:48:06	MarkDuplicates	Tracking 1335929 as yet unmatched pairs. 100488 records in RAM.
INFO	2026-06-08 08:48:08	MarkDuplicates	Read   256,000,000 records.  Elapsed time: 00:07:32s.  Time for last 1,000,000:    1s.  Last read position: chr8:27,604,941
INFO	2026-06-08 08:48:08	MarkDuplicates	Tracking 1332425 as yet unmatched pairs. 96976 records in RAM.
INFO	2026-06-08 08:49:07	MarkDuplicates	Read   257,000,000 records.  Elapsed time: 00:08:31s.  Time for last 1,000,000:   59s.  Last read position: chr8:37,697,767
INFO	2026-06-08 08:49:07	MarkDuplicates	Tracking 1329725 as yet unmatched pairs. 94267 records in RAM.
INFO	2026-06-08 08:49:09	MarkDuplicates	Read   258,000,000 records.  Elapsed time: 00:08:32s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,288,529
INFO	2026-06-08 08:49:09	MarkDuplicates	Tracking 1324096 as yet unmatched pairs. 88632 records in RAM.
INFO	2026-06-08 08:49:11	MarkDuplicates	Read   259,000,000 records.  Elapsed time: 00:08:34s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,843,298
INFO	2026-06-08 08:49:11	MarkDuplicates	Tracking 1321364 as yet unmatched pairs. 85898 records in RAM.
INFO	2026-06-08 08:49:12	MarkDuplicates	Read   260,000,000 records.  Elapsed time: 00:08:36s.  Time for last 1,000,000:    1s.  Last read position: chr8:47,782,477
INFO	2026-06-08 08:49:12	MarkDuplicates	Tracking 1317803 as yet unmatched pairs. 82329 records in RAM.
INFO	2026-06-08 08:49:14	MarkDuplicates	Read   261,000,000 records.  Elapsed time: 00:08:38s.  Time for last 1,000,000:    1s.  Last read position: chr8:56,316,257
INFO	2026-06-08 08:49:14	MarkDuplicates	Tracking 1314462 as yet unmatched pairs. 78975 records in RAM.
INFO	2026-06-08 08:49:16	MarkDuplicates	Read   262,000,000 records.  Elapsed time: 00:08:39s.  Time for last 1,000,000:    1s.  Last read position: chr8:69,624,025
INFO	2026-06-08 08:49:16	MarkDuplicates	Tracking 1311685 as yet unmatched pairs. 76181 records in RAM.
INFO	2026-06-08 08:49:17	MarkDuplicates	Read   263,000,000 records.  Elapsed time: 00:08:41s.  Time for last 1,000,000:    1s.  Last read position: chr8:76,984,075
INFO	2026-06-08 08:49:17	MarkDuplicates	Tracking 1309098 as yet unmatched pairs. 73588 records in RAM.
INFO	2026-06-08 08:49:19	MarkDuplicates	Read   264,000,000 records.  Elapsed time: 00:08:42s.  Time for last 1,000,000:    1s.  Last read position: chr8:94,526,380
INFO	2026-06-08 08:49:19	MarkDuplicates	Tracking 1306199 as yet unmatched pairs. 70673 records in RAM.
INFO	2026-06-08 08:49:21	MarkDuplicates	Read   265,000,000 records.  Elapsed time: 00:08:44s.  Time for last 1,000,000:    1s.  Last read position: chr8:100,704,999
INFO	2026-06-08 08:49:21	MarkDuplicates	Tracking 1304189 as yet unmatched pairs. 68657 records in RAM.
INFO	2026-06-08 08:49:22	MarkDuplicates	Read   266,000,000 records.  Elapsed time: 00:08:46s.  Time for last 1,000,000:    1s.  Last read position: chr8:102,275,531
INFO	2026-06-08 08:49:22	MarkDuplicates	Tracking 1299917 as yet unmatched pairs. 64379 records in RAM.
INFO	2026-06-08 08:49:24	MarkDuplicates	Read   267,000,000 records.  Elapsed time: 00:08:48s.  Time for last 1,000,000:    1s.  Last read position: chr8:118,110,192
INFO	2026-06-08 08:49:24	MarkDuplicates	Tracking 1297019 as yet unmatched pairs. 61466 records in RAM.
INFO	2026-06-08 08:49:26	MarkDuplicates	Read   268,000,000 records.  Elapsed time: 00:08:49s.  Time for last 1,000,000:    1s.  Last read position: chr8:127,736,489
INFO	2026-06-08 08:49:26	MarkDuplicates	Tracking 1295898 as yet unmatched pairs. 60324 records in RAM.
INFO	2026-06-08 08:49:27	MarkDuplicates	Read   269,000,000 records.  Elapsed time: 00:08:51s.  Time for last 1,000,000:    1s.  Last read position: chr8:139,730,914
INFO	2026-06-08 08:49:27	MarkDuplicates	Tracking 1289775 as yet unmatched pairs. 54182 records in RAM.
INFO	2026-06-08 08:49:29	MarkDuplicates	Read   270,000,000 records.  Elapsed time: 00:08:53s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,574,929
INFO	2026-06-08 08:49:29	MarkDuplicates	Tracking 1286091 as yet unmatched pairs. 50475 records in RAM.
INFO	2026-06-08 08:49:31	MarkDuplicates	Read   271,000,000 records.  Elapsed time: 00:08:54s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,791,891
INFO	2026-06-08 08:49:31	MarkDuplicates	Tracking 1281895 as yet unmatched pairs. 46268 records in RAM.
INFO	2026-06-08 08:49:32	MarkDuplicates	Read   272,000,000 records.  Elapsed time: 00:08:56s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,858,398
INFO	2026-06-08 08:49:32	MarkDuplicates	Tracking 1279057 as yet unmatched pairs. 43421 records in RAM.
INFO	2026-06-08 08:49:33	MarkDuplicates	Read   273,000,000 records.  Elapsed time: 00:08:57s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,859,394
INFO	2026-06-08 08:49:33	MarkDuplicates	Tracking 1277138 as yet unmatched pairs. 41495 records in RAM.
INFO	2026-06-08 08:49:34	MarkDuplicates	Read   274,000,000 records.  Elapsed time: 00:08:58s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,860,414
INFO	2026-06-08 08:49:34	MarkDuplicates	Tracking 1276214 as yet unmatched pairs. 40571 records in RAM.
INFO	2026-06-08 08:49:36	MarkDuplicates	Read   275,000,000 records.  Elapsed time: 00:08:59s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,861,403
INFO	2026-06-08 08:49:36	MarkDuplicates	Tracking 1275205 as yet unmatched pairs. 39559 records in RAM.
INFO	2026-06-08 08:49:37	MarkDuplicates	Read   276,000,000 records.  Elapsed time: 00:09:00s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,862,186
INFO	2026-06-08 08:49:37	MarkDuplicates	Tracking 1274743 as yet unmatched pairs. 39096 records in RAM.
INFO	2026-06-08 08:49:38	MarkDuplicates	Read   277,000,000 records.  Elapsed time: 00:09:02s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,863,087
INFO	2026-06-08 08:49:38	MarkDuplicates	Tracking 1275210 as yet unmatched pairs. 39563 records in RAM.
INFO	2026-06-08 08:49:39	MarkDuplicates	Read   278,000,000 records.  Elapsed time: 00:09:03s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,863,881
INFO	2026-06-08 08:49:39	MarkDuplicates	Tracking 1269201 as yet unmatched pairs. 33554 records in RAM.
INFO	2026-06-08 08:49:41	MarkDuplicates	Read   279,000,000 records.  Elapsed time: 00:09:04s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,864,855
INFO	2026-06-08 08:49:41	MarkDuplicates	Tracking 1269548 as yet unmatched pairs. 33901 records in RAM.
INFO	2026-06-08 08:49:42	MarkDuplicates	Read   280,000,000 records.  Elapsed time: 00:09:05s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,866,045
INFO	2026-06-08 08:49:42	MarkDuplicates	Tracking 1267362 as yet unmatched pairs. 31714 records in RAM.
INFO	2026-06-08 08:49:43	MarkDuplicates	Read   281,000,000 records.  Elapsed time: 00:09:07s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,867,988
INFO	2026-06-08 08:49:43	MarkDuplicates	Tracking 1267366 as yet unmatched pairs. 31711 records in RAM.
INFO	2026-06-08 08:49:45	MarkDuplicates	Read   282,000,000 records.  Elapsed time: 00:09:08s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,916,715
INFO	2026-06-08 08:49:45	MarkDuplicates	Tracking 1262391 as yet unmatched pairs. 26733 records in RAM.
INFO	2026-06-08 08:49:46	MarkDuplicates	Read   283,000,000 records.  Elapsed time: 00:09:10s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,921,483
INFO	2026-06-08 08:49:46	MarkDuplicates	Tracking 1259291 as yet unmatched pairs. 23627 records in RAM.
INFO	2026-06-08 08:49:47	MarkDuplicates	Read   284,000,000 records.  Elapsed time: 00:09:11s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,930,146
INFO	2026-06-08 08:49:47	MarkDuplicates	Tracking 1253253 as yet unmatched pairs. 17583 records in RAM.
INFO	2026-06-08 08:49:50	MarkDuplicates	Read   285,000,000 records.  Elapsed time: 00:09:13s.  Time for last 1,000,000:    2s.  Last read position: chr8:144,099,277
INFO	2026-06-08 08:49:50	MarkDuplicates	Tracking 1247094 as yet unmatched pairs. 11423 records in RAM.
INFO	2026-06-08 08:49:52	MarkDuplicates	Read   286,000,000 records.  Elapsed time: 00:09:15s.  Time for last 1,000,000:    1s.  Last read position: chr8:144,360,481
INFO	2026-06-08 08:49:52	MarkDuplicates	Tracking 1243234 as yet unmatched pairs. 7557 records in RAM.
INFO	2026-06-08 08:49:53	MarkDuplicates	Read   287,000,000 records.  Elapsed time: 00:09:17s.  Time for last 1,000,000:    1s.  Last read position: chr8:144,516,222
INFO	2026-06-08 08:49:53	MarkDuplicates	Tracking 1238333 as yet unmatched pairs. 2643 records in RAM.
INFO	2026-06-08 08:49:55	MarkDuplicates	Read   288,000,000 records.  Elapsed time: 00:09:19s.  Time for last 1,000,000:    2s.  Last read position: chr9:2,123,719
INFO	2026-06-08 08:49:55	MarkDuplicates	Tracking 1234745 as yet unmatched pairs. 82182 records in RAM.
INFO	2026-06-08 08:49:57	MarkDuplicates	Read   289,000,000 records.  Elapsed time: 00:09:20s.  Time for last 1,000,000:    1s.  Last read position: chr9:15,472,646
INFO	2026-06-08 08:49:57	MarkDuplicates	Tracking 1231837 as yet unmatched pairs. 79251 records in RAM.
INFO	2026-06-08 08:49:59	MarkDuplicates	Read   290,000,000 records.  Elapsed time: 00:09:22s.  Time for last 1,000,000:    1s.  Last read position: chr9:33,135,189
INFO	2026-06-08 08:49:59	MarkDuplicates	Tracking 1228661 as yet unmatched pairs. 76062 records in RAM.
INFO	2026-06-08 08:50:00	MarkDuplicates	Read   291,000,000 records.  Elapsed time: 00:09:24s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,304,324
INFO	2026-06-08 08:50:00	MarkDuplicates	Tracking 1225161 as yet unmatched pairs. 72558 records in RAM.
INFO	2026-06-08 08:50:02	MarkDuplicates	Read   292,000,000 records.  Elapsed time: 00:09:25s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,736,066
INFO	2026-06-08 08:50:02	MarkDuplicates	Tracking 1221388 as yet unmatched pairs. 68782 records in RAM.
INFO	2026-06-08 08:50:03	MarkDuplicates	Read   293,000,000 records.  Elapsed time: 00:09:27s.  Time for last 1,000,000:    1s.  Last read position: chr9:68,357,103
INFO	2026-06-08 08:50:03	MarkDuplicates	Tracking 1218735 as yet unmatched pairs. 66078 records in RAM.
INFO	2026-06-08 08:50:05	MarkDuplicates	Read   294,000,000 records.  Elapsed time: 00:09:28s.  Time for last 1,000,000:    1s.  Last read position: chr9:76,710,354
INFO	2026-06-08 08:50:05	MarkDuplicates	Tracking 1215446 as yet unmatched pairs. 62780 records in RAM.
INFO	2026-06-08 08:50:06	MarkDuplicates	Read   295,000,000 records.  Elapsed time: 00:09:30s.  Time for last 1,000,000:    1s.  Last read position: chr9:89,315,241
INFO	2026-06-08 08:50:06	MarkDuplicates	Tracking 1212365 as yet unmatched pairs. 59692 records in RAM.
INFO	2026-06-08 08:50:08	MarkDuplicates	Read   296,000,000 records.  Elapsed time: 00:09:32s.  Time for last 1,000,000:    1s.  Last read position: chr9:93,645,698
INFO	2026-06-08 08:50:08	MarkDuplicates	Tracking 1208889 as yet unmatched pairs. 56196 records in RAM.
INFO	2026-06-08 08:50:09	MarkDuplicates	Read   297,000,000 records.  Elapsed time: 00:09:33s.  Time for last 1,000,000:    1s.  Last read position: chr9:99,828,252
INFO	2026-06-08 08:50:09	MarkDuplicates	Tracking 1205522 as yet unmatched pairs. 52816 records in RAM.
INFO	2026-06-08 08:50:11	MarkDuplicates	Read   298,000,000 records.  Elapsed time: 00:09:35s.  Time for last 1,000,000:    1s.  Last read position: chr9:110,136,501
INFO	2026-06-08 08:50:11	MarkDuplicates	Tracking 1202505 as yet unmatched pairs. 49794 records in RAM.
INFO	2026-06-08 08:50:12	MarkDuplicates	Read   299,000,000 records.  Elapsed time: 00:09:36s.  Time for last 1,000,000:    1s.  Last read position: chr9:114,785,666
INFO	2026-06-08 08:50:12	MarkDuplicates	Tracking 1198997 as yet unmatched pairs. 46283 records in RAM.
INFO	2026-06-08 08:50:14	MarkDuplicates	Read   300,000,000 records.  Elapsed time: 00:09:38s.  Time for last 1,000,000:    1s.  Last read position: chr9:121,760,181
INFO	2026-06-08 08:50:14	MarkDuplicates	Tracking 1196010 as yet unmatched pairs. 43289 records in RAM.
INFO	2026-06-08 08:50:16	MarkDuplicates	Read   301,000,000 records.  Elapsed time: 00:09:39s.  Time for last 1,000,000:    1s.  Last read position: chr9:127,108,092
INFO	2026-06-08 08:50:16	MarkDuplicates	Tracking 1192452 as yet unmatched pairs. 39726 records in RAM.
INFO	2026-06-08 08:50:17	MarkDuplicates	Read   302,000,000 records.  Elapsed time: 00:09:41s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,179,162
INFO	2026-06-08 08:50:17	MarkDuplicates	Tracking 1188790 as yet unmatched pairs. 36051 records in RAM.
INFO	2026-06-08 08:50:19	MarkDuplicates	Read   303,000,000 records.  Elapsed time: 00:09:42s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,720,519
INFO	2026-06-08 08:50:19	MarkDuplicates	Tracking 1185019 as yet unmatched pairs. 32277 records in RAM.
INFO	2026-06-08 08:50:21	MarkDuplicates	Read   304,000,000 records.  Elapsed time: 00:09:44s.  Time for last 1,000,000:    1s.  Last read position: chr9:130,393,222
INFO	2026-06-08 08:50:21	MarkDuplicates	Tracking 1181248 as yet unmatched pairs. 28499 records in RAM.
INFO	2026-06-08 08:50:22	MarkDuplicates	Read   305,000,000 records.  Elapsed time: 00:09:46s.  Time for last 1,000,000:    1s.  Last read position: chr9:131,446,543
INFO	2026-06-08 08:50:22	MarkDuplicates	Tracking 1178025 as yet unmatched pairs. 25274 records in RAM.
INFO	2026-06-08 08:50:23	MarkDuplicates	Read   306,000,000 records.  Elapsed time: 00:09:47s.  Time for last 1,000,000:    1s.  Last read position: chr9:133,255,297
INFO	2026-06-08 08:50:23	MarkDuplicates	Tracking 1174606 as yet unmatched pairs. 21846 records in RAM.
INFO	2026-06-08 08:50:25	MarkDuplicates	Read   307,000,000 records.  Elapsed time: 00:09:49s.  Time for last 1,000,000:    1s.  Last read position: chr9:134,758,279
INFO	2026-06-08 08:50:25	MarkDuplicates	Tracking 1171047 as yet unmatched pairs. 18281 records in RAM.
INFO	2026-06-08 08:50:27	MarkDuplicates	Read   308,000,000 records.  Elapsed time: 00:09:51s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,466,286
INFO	2026-06-08 08:50:27	MarkDuplicates	Tracking 1167093 as yet unmatched pairs. 14320 records in RAM.
INFO	2026-06-08 08:50:28	MarkDuplicates	Read   309,000,000 records.  Elapsed time: 00:09:52s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,837,503
INFO	2026-06-08 08:50:28	MarkDuplicates	Tracking 1164137 as yet unmatched pairs. 11354 records in RAM.
INFO	2026-06-08 08:50:30	MarkDuplicates	Read   310,000,000 records.  Elapsed time: 00:09:54s.  Time for last 1,000,000:    1s.  Last read position: chr9:137,050,900
INFO	2026-06-08 08:50:30	MarkDuplicates	Tracking 1159043 as yet unmatched pairs. 6253 records in RAM.
INFO	2026-06-08 08:50:32	MarkDuplicates	Read   311,000,000 records.  Elapsed time: 00:09:55s.  Time for last 1,000,000:    1s.  Last read position: chr9:137,454,393
INFO	2026-06-08 08:50:32	MarkDuplicates	Tracking 1154320 as yet unmatched pairs. 1517 records in RAM.
INFO	2026-06-08 08:50:34	MarkDuplicates	Read   312,000,000 records.  Elapsed time: 00:09:58s.  Time for last 1,000,000:    2s.  Last read position: chr10:5,739,691
INFO	2026-06-08 08:50:34	MarkDuplicates	Tracking 1150817 as yet unmatched pairs. 60935 records in RAM.
INFO	2026-06-08 08:50:35	MarkDuplicates	Read   313,000,000 records.  Elapsed time: 00:09:59s.  Time for last 1,000,000:    1s.  Last read position: chr10:18,596,325
INFO	2026-06-08 08:50:35	MarkDuplicates	Tracking 1147562 as yet unmatched pairs. 57670 records in RAM.
INFO	2026-06-08 08:50:37	MarkDuplicates	Read   314,000,000 records.  Elapsed time: 00:10:01s.  Time for last 1,000,000:    1s.  Last read position: chr10:29,473,949
INFO	2026-06-08 08:50:37	MarkDuplicates	Tracking 1144905 as yet unmatched pairs. 55007 records in RAM.
INFO	2026-06-08 08:50:39	MarkDuplicates	Read   315,000,000 records.  Elapsed time: 00:10:02s.  Time for last 1,000,000:    1s.  Last read position: chr10:32,022,145
INFO	2026-06-08 08:50:39	MarkDuplicates	Tracking 1143946 as yet unmatched pairs. 54045 records in RAM.
INFO	2026-06-08 08:50:40	MarkDuplicates	Read   316,000,000 records.  Elapsed time: 00:10:04s.  Time for last 1,000,000:    1s.  Last read position: chr10:35,529,970
INFO	2026-06-08 08:50:40	MarkDuplicates	Tracking 1139349 as yet unmatched pairs. 49447 records in RAM.
INFO	2026-06-08 08:50:42	MarkDuplicates	Read   317,000,000 records.  Elapsed time: 00:10:05s.  Time for last 1,000,000:    1s.  Last read position: chr10:46,819,471
INFO	2026-06-08 08:50:42	MarkDuplicates	Tracking 1137101 as yet unmatched pairs. 47191 records in RAM.
INFO	2026-06-08 08:50:43	MarkDuplicates	Read   318,000,000 records.  Elapsed time: 00:10:07s.  Time for last 1,000,000:    1s.  Last read position: chr10:59,852,559
INFO	2026-06-08 08:50:43	MarkDuplicates	Tracking 1135242 as yet unmatched pairs. 45320 records in RAM.
INFO	2026-06-08 08:50:45	MarkDuplicates	Read   319,000,000 records.  Elapsed time: 00:10:09s.  Time for last 1,000,000:    1s.  Last read position: chr10:69,382,540
INFO	2026-06-08 08:50:45	MarkDuplicates	Tracking 1131543 as yet unmatched pairs. 41615 records in RAM.
INFO	2026-06-08 08:50:47	MarkDuplicates	Read   320,000,000 records.  Elapsed time: 00:10:10s.  Time for last 1,000,000:    1s.  Last read position: chr10:73,539,446
INFO	2026-06-08 08:50:47	MarkDuplicates	Tracking 1127954 as yet unmatched pairs. 38023 records in RAM.
INFO	2026-06-08 08:50:48	MarkDuplicates	Read   321,000,000 records.  Elapsed time: 00:10:12s.  Time for last 1,000,000:    1s.  Last read position: chr10:77,824,410
INFO	2026-06-08 08:50:48	MarkDuplicates	Tracking 1124829 as yet unmatched pairs. 34892 records in RAM.
INFO	2026-06-08 08:50:50	MarkDuplicates	Read   322,000,000 records.  Elapsed time: 00:10:13s.  Time for last 1,000,000:    1s.  Last read position: chr10:84,372,374
INFO	2026-06-08 08:50:50	MarkDuplicates	Tracking 1121743 as yet unmatched pairs. 31802 records in RAM.
INFO	2026-06-08 08:50:51	MarkDuplicates	Read   323,000,000 records.  Elapsed time: 00:10:15s.  Time for last 1,000,000:    1s.  Last read position: chr10:91,992,118
INFO	2026-06-08 08:50:51	MarkDuplicates	Tracking 1119041 as yet unmatched pairs. 29094 records in RAM.
INFO	2026-06-08 08:50:53	MarkDuplicates	Read   324,000,000 records.  Elapsed time: 00:10:16s.  Time for last 1,000,000:    1s.  Last read position: chr10:95,643,073
INFO	2026-06-08 08:50:53	MarkDuplicates	Tracking 1115983 as yet unmatched pairs. 26034 records in RAM.
INFO	2026-06-08 08:50:54	MarkDuplicates	Read   325,000,000 records.  Elapsed time: 00:10:18s.  Time for last 1,000,000:    1s.  Last read position: chr10:99,533,387
INFO	2026-06-08 08:50:54	MarkDuplicates	Tracking 1112801 as yet unmatched pairs. 22840 records in RAM.
INFO	2026-06-08 08:50:56	MarkDuplicates	Read   326,000,000 records.  Elapsed time: 00:10:20s.  Time for last 1,000,000:    1s.  Last read position: chr10:102,111,068
INFO	2026-06-08 08:50:56	MarkDuplicates	Tracking 1109336 as yet unmatched pairs. 19362 records in RAM.
INFO	2026-06-08 08:50:58	MarkDuplicates	Read   327,000,000 records.  Elapsed time: 00:10:21s.  Time for last 1,000,000:    1s.  Last read position: chr10:103,602,689
INFO	2026-06-08 08:50:58	MarkDuplicates	Tracking 1106156 as yet unmatched pairs. 16166 records in RAM.
INFO	2026-06-08 08:50:59	MarkDuplicates	Read   328,000,000 records.  Elapsed time: 00:10:23s.  Time for last 1,000,000:    1s.  Last read position: chr10:110,602,994
INFO	2026-06-08 08:50:59	MarkDuplicates	Tracking 1102668 as yet unmatched pairs. 12664 records in RAM.
INFO	2026-06-08 08:51:01	MarkDuplicates	Read   329,000,000 records.  Elapsed time: 00:10:25s.  Time for last 1,000,000:    1s.  Last read position: chr10:117,284,432
INFO	2026-06-08 08:51:01	MarkDuplicates	Tracking 1099969 as yet unmatched pairs. 9950 records in RAM.
INFO	2026-06-08 08:51:03	MarkDuplicates	Read   330,000,000 records.  Elapsed time: 00:10:26s.  Time for last 1,000,000:    1s.  Last read position: chr10:122,084,690
INFO	2026-06-08 08:51:03	MarkDuplicates	Tracking 1096697 as yet unmatched pairs. 6673 records in RAM.
INFO	2026-06-08 08:51:04	MarkDuplicates	Read   331,000,000 records.  Elapsed time: 00:10:28s.  Time for last 1,000,000:    1s.  Last read position: chr10:128,073,410
INFO	2026-06-08 08:51:04	MarkDuplicates	Tracking 1093311 as yet unmatched pairs. 3276 records in RAM.
INFO	2026-06-08 08:51:06	MarkDuplicates	Read   332,000,000 records.  Elapsed time: 00:10:29s.  Time for last 1,000,000:    1s.  Last read position: chr10:133,459,843
INFO	2026-06-08 08:51:06	MarkDuplicates	Tracking 1090095 as yet unmatched pairs. 50 records in RAM.
INFO	2026-06-08 08:51:09	MarkDuplicates	Read   333,000,000 records.  Elapsed time: 00:10:32s.  Time for last 1,000,000:    2s.  Last read position: chr11:319,934
INFO	2026-06-08 08:51:09	MarkDuplicates	Tracking 1090217 as yet unmatched pairs. 129808 records in RAM.
INFO	2026-06-08 08:51:10	MarkDuplicates	Read   334,000,000 records.  Elapsed time: 00:10:34s.  Time for last 1,000,000:    1s.  Last read position: chr11:609,605
INFO	2026-06-08 08:51:10	MarkDuplicates	Tracking 1082832 as yet unmatched pairs. 122421 records in RAM.
INFO	2026-06-08 08:51:12	MarkDuplicates	Read   335,000,000 records.  Elapsed time: 00:10:35s.  Time for last 1,000,000:    1s.  Last read position: chr11:866,580
INFO	2026-06-08 08:51:12	MarkDuplicates	Tracking 1078355 as yet unmatched pairs. 117933 records in RAM.
INFO	2026-06-08 08:51:14	MarkDuplicates	Read   336,000,000 records.  Elapsed time: 00:10:37s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,088,284
INFO	2026-06-08 08:51:14	MarkDuplicates	Tracking 1075790 as yet unmatched pairs. 115364 records in RAM.
INFO	2026-06-08 08:51:15	MarkDuplicates	Read   337,000,000 records.  Elapsed time: 00:10:39s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,753,808
INFO	2026-06-08 08:51:15	MarkDuplicates	Tracking 1071696 as yet unmatched pairs. 111269 records in RAM.
INFO	2026-06-08 08:51:17	MarkDuplicates	Read   338,000,000 records.  Elapsed time: 00:10:41s.  Time for last 1,000,000:    1s.  Last read position: chr11:3,713,922
INFO	2026-06-08 08:51:17	MarkDuplicates	Tracking 1067028 as yet unmatched pairs. 106593 records in RAM.
INFO	2026-06-08 08:51:19	MarkDuplicates	Read   339,000,000 records.  Elapsed time: 00:10:42s.  Time for last 1,000,000:    1s.  Last read position: chr11:7,987,361
INFO	2026-06-08 08:51:19	MarkDuplicates	Tracking 1063798 as yet unmatched pairs. 103357 records in RAM.
INFO	2026-06-08 08:51:20	MarkDuplicates	Read   340,000,000 records.  Elapsed time: 00:10:44s.  Time for last 1,000,000:    1s.  Last read position: chr11:10,797,742
INFO	2026-06-08 08:51:20	MarkDuplicates	Tracking 1060721 as yet unmatched pairs. 100271 records in RAM.
INFO	2026-06-08 08:51:23	MarkDuplicates	Read   341,000,000 records.  Elapsed time: 00:10:46s.  Time for last 1,000,000:    2s.  Last read position: chr11:16,974,713
INFO	2026-06-08 08:51:23	MarkDuplicates	Tracking 1057414 as yet unmatched pairs. 96961 records in RAM.
INFO	2026-06-08 08:51:25	MarkDuplicates	Read   342,000,000 records.  Elapsed time: 00:10:48s.  Time for last 1,000,000:    2s.  Last read position: chr11:32,934,286
INFO	2026-06-08 08:51:25	MarkDuplicates	Tracking 1054031 as yet unmatched pairs. 93569 records in RAM.
INFO	2026-06-08 08:51:26	MarkDuplicates	Read   343,000,000 records.  Elapsed time: 00:10:50s.  Time for last 1,000,000:    1s.  Last read position: chr11:44,926,721
INFO	2026-06-08 08:51:26	MarkDuplicates	Tracking 1050766 as yet unmatched pairs. 90294 records in RAM.
INFO	2026-06-08 08:51:28	MarkDuplicates	Read   344,000,000 records.  Elapsed time: 00:10:52s.  Time for last 1,000,000:    1s.  Last read position: chr11:46,542,795
INFO	2026-06-08 08:51:28	MarkDuplicates	Tracking 1047403 as yet unmatched pairs. 86924 records in RAM.
INFO	2026-06-08 08:51:30	MarkDuplicates	Read   345,000,000 records.  Elapsed time: 00:10:53s.  Time for last 1,000,000:    1s.  Last read position: chr11:57,302,533
INFO	2026-06-08 08:51:30	MarkDuplicates	Tracking 1043937 as yet unmatched pairs. 83450 records in RAM.
INFO	2026-06-08 08:51:31	MarkDuplicates	Read   346,000,000 records.  Elapsed time: 00:10:55s.  Time for last 1,000,000:    1s.  Last read position: chr11:59,172,784
INFO	2026-06-08 08:51:31	MarkDuplicates	Tracking 1040553 as yet unmatched pairs. 80062 records in RAM.
INFO	2026-06-08 08:51:33	MarkDuplicates	Read   347,000,000 records.  Elapsed time: 00:10:57s.  Time for last 1,000,000:    1s.  Last read position: chr11:61,795,479
INFO	2026-06-08 08:51:33	MarkDuplicates	Tracking 1037010 as yet unmatched pairs. 76497 records in RAM.
INFO	2026-06-08 08:51:34	MarkDuplicates	Read   348,000,000 records.  Elapsed time: 00:10:58s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,524,137
INFO	2026-06-08 08:51:34	MarkDuplicates	Tracking 1034613 as yet unmatched pairs. 74098 records in RAM.
INFO	2026-06-08 08:51:36	MarkDuplicates	Read   349,000,000 records.  Elapsed time: 00:11:00s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,535,055
INFO	2026-06-08 08:51:36	MarkDuplicates	Tracking 1032100 as yet unmatched pairs. 71584 records in RAM.
INFO	2026-06-08 08:51:38	MarkDuplicates	Read   350,000,000 records.  Elapsed time: 00:11:01s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,774,619
INFO	2026-06-08 08:51:38	MarkDuplicates	Tracking 1027962 as yet unmatched pairs. 67446 records in RAM.
INFO	2026-06-08 08:51:39	MarkDuplicates	Read   351,000,000 records.  Elapsed time: 00:11:03s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,243,456
INFO	2026-06-08 08:51:39	MarkDuplicates	Tracking 1024084 as yet unmatched pairs. 63563 records in RAM.
INFO	2026-06-08 08:51:41	MarkDuplicates	Read   352,000,000 records.  Elapsed time: 00:11:04s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,834,285
INFO	2026-06-08 08:51:41	MarkDuplicates	Tracking 1020277 as yet unmatched pairs. 59745 records in RAM.
INFO	2026-06-08 08:51:42	MarkDuplicates	Read   353,000,000 records.  Elapsed time: 00:11:06s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,540,041
INFO	2026-06-08 08:51:42	MarkDuplicates	Tracking 1016388 as yet unmatched pairs. 55837 records in RAM.
INFO	2026-06-08 08:51:44	MarkDuplicates	Read   354,000,000 records.  Elapsed time: 00:11:08s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,658,382
INFO	2026-06-08 08:51:44	MarkDuplicates	Tracking 1012218 as yet unmatched pairs. 51667 records in RAM.
INFO	2026-06-08 08:51:46	MarkDuplicates	Read   355,000,000 records.  Elapsed time: 00:11:09s.  Time for last 1,000,000:    1s.  Last read position: chr11:66,316,208
INFO	2026-06-08 08:51:46	MarkDuplicates	Tracking 1008344 as yet unmatched pairs. 47789 records in RAM.
INFO	2026-06-08 08:51:47	MarkDuplicates	Read   356,000,000 records.  Elapsed time: 00:11:11s.  Time for last 1,000,000:    1s.  Last read position: chr11:67,284,845
INFO	2026-06-08 08:51:47	MarkDuplicates	Tracking 1004361 as yet unmatched pairs. 43804 records in RAM.
INFO	2026-06-08 08:51:49	MarkDuplicates	Read   357,000,000 records.  Elapsed time: 00:11:12s.  Time for last 1,000,000:    1s.  Last read position: chr11:68,045,012
INFO	2026-06-08 08:51:49	MarkDuplicates	Tracking 1000170 as yet unmatched pairs. 39610 records in RAM.
INFO	2026-06-08 08:51:50	MarkDuplicates	Read   358,000,000 records.  Elapsed time: 00:11:14s.  Time for last 1,000,000:    1s.  Last read position: chr11:69,643,850
INFO	2026-06-08 08:51:50	MarkDuplicates	Tracking 997179 as yet unmatched pairs. 36593 records in RAM.
INFO	2026-06-08 08:51:52	MarkDuplicates	Read   359,000,000 records.  Elapsed time: 00:11:16s.  Time for last 1,000,000:    2s.  Last read position: chr11:72,013,774
INFO	2026-06-08 08:51:52	MarkDuplicates	Tracking 993399 as yet unmatched pairs. 32803 records in RAM.
INFO	2026-06-08 08:51:54	MarkDuplicates	Read   360,000,000 records.  Elapsed time: 00:11:18s.  Time for last 1,000,000:    2s.  Last read position: chr11:73,409,568
INFO	2026-06-08 08:51:54	MarkDuplicates	Tracking 988872 as yet unmatched pairs. 28270 records in RAM.
INFO	2026-06-08 08:51:56	MarkDuplicates	Read   361,000,000 records.  Elapsed time: 00:11:20s.  Time for last 1,000,000:    1s.  Last read position: chr11:76,665,893
INFO	2026-06-08 08:51:56	MarkDuplicates	Tracking 985718 as yet unmatched pairs. 25101 records in RAM.
INFO	2026-06-08 08:51:58	MarkDuplicates	Read   362,000,000 records.  Elapsed time: 00:11:21s.  Time for last 1,000,000:    1s.  Last read position: chr11:88,294,195
INFO	2026-06-08 08:51:58	MarkDuplicates	Tracking 982739 as yet unmatched pairs. 22117 records in RAM.
INFO	2026-06-08 08:51:59	MarkDuplicates	Read   363,000,000 records.  Elapsed time: 00:11:23s.  Time for last 1,000,000:    1s.  Last read position: chr11:102,206,014
INFO	2026-06-08 08:51:59	MarkDuplicates	Tracking 980358 as yet unmatched pairs. 19721 records in RAM.
INFO	2026-06-08 08:52:01	MarkDuplicates	Read   364,000,000 records.  Elapsed time: 00:11:24s.  Time for last 1,000,000:    1s.  Last read position: chr11:114,441,622
INFO	2026-06-08 08:52:01	MarkDuplicates	Tracking 976359 as yet unmatched pairs. 15716 records in RAM.
INFO	2026-06-08 08:52:02	MarkDuplicates	Read   365,000,000 records.  Elapsed time: 00:11:26s.  Time for last 1,000,000:    1s.  Last read position: chr11:118,503,453
INFO	2026-06-08 08:52:02	MarkDuplicates	Tracking 973292 as yet unmatched pairs. 12645 records in RAM.
INFO	2026-06-08 08:52:04	MarkDuplicates	Read   366,000,000 records.  Elapsed time: 00:11:27s.  Time for last 1,000,000:    1s.  Last read position: chr11:119,100,375
INFO	2026-06-08 08:52:04	MarkDuplicates	Tracking 969907 as yet unmatched pairs. 9254 records in RAM.
INFO	2026-06-08 08:52:05	MarkDuplicates	Read   367,000,000 records.  Elapsed time: 00:11:29s.  Time for last 1,000,000:    1s.  Last read position: chr11:123,059,646
INFO	2026-06-08 08:52:05	MarkDuplicates	Tracking 968390 as yet unmatched pairs. 7735 records in RAM.
INFO	2026-06-08 08:52:07	MarkDuplicates	Read   368,000,000 records.  Elapsed time: 00:11:30s.  Time for last 1,000,000:    1s.  Last read position: chr11:128,972,465
INFO	2026-06-08 08:52:07	MarkDuplicates	Tracking 963788 as yet unmatched pairs. 3131 records in RAM.
INFO	2026-06-08 08:52:09	MarkDuplicates	Read   369,000,000 records.  Elapsed time: 00:11:33s.  Time for last 1,000,000:    2s.  Last read position: chr12:350,663
INFO	2026-06-08 08:52:09	MarkDuplicates	Tracking 960395 as yet unmatched pairs. 105210 records in RAM.
INFO	2026-06-08 08:52:11	MarkDuplicates	Read   370,000,000 records.  Elapsed time: 00:11:34s.  Time for last 1,000,000:    1s.  Last read position: chr12:3,211,804
INFO	2026-06-08 08:52:11	MarkDuplicates	Tracking 957084 as yet unmatched pairs. 101889 records in RAM.
INFO	2026-06-08 08:52:12	MarkDuplicates	Read   371,000,000 records.  Elapsed time: 00:11:36s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,557,203
INFO	2026-06-08 08:52:12	MarkDuplicates	Tracking 953577 as yet unmatched pairs. 98375 records in RAM.
INFO	2026-06-08 08:52:14	MarkDuplicates	Read   372,000,000 records.  Elapsed time: 00:11:38s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,937,128
INFO	2026-06-08 08:52:14	MarkDuplicates	Tracking 950619 as yet unmatched pairs. 95417 records in RAM.
INFO	2026-06-08 08:52:16	MarkDuplicates	Read   373,000,000 records.  Elapsed time: 00:11:39s.  Time for last 1,000,000:    1s.  Last read position: chr12:9,443,531
INFO	2026-06-08 08:52:16	MarkDuplicates	Tracking 947179 as yet unmatched pairs. 91975 records in RAM.
INFO	2026-06-08 08:52:17	MarkDuplicates	Read   374,000,000 records.  Elapsed time: 00:11:41s.  Time for last 1,000,000:    1s.  Last read position: chr12:14,456,595
INFO	2026-06-08 08:52:17	MarkDuplicates	Tracking 944211 as yet unmatched pairs. 89000 records in RAM.
INFO	2026-06-08 08:52:18	MarkDuplicates	Read   375,000,000 records.  Elapsed time: 00:11:42s.  Time for last 1,000,000:    1s.  Last read position: chr12:27,317,987
INFO	2026-06-08 08:52:18	MarkDuplicates	Tracking 940968 as yet unmatched pairs. 85752 records in RAM.
INFO	2026-06-08 08:52:20	MarkDuplicates	Read   376,000,000 records.  Elapsed time: 00:11:44s.  Time for last 1,000,000:    1s.  Last read position: chr12:45,852,694
INFO	2026-06-08 08:52:20	MarkDuplicates	Tracking 937952 as yet unmatched pairs. 82727 records in RAM.
INFO	2026-06-08 08:52:22	MarkDuplicates	Read   377,000,000 records.  Elapsed time: 00:11:45s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,030,727
INFO	2026-06-08 08:52:22	MarkDuplicates	Tracking 934678 as yet unmatched pairs. 79444 records in RAM.
INFO	2026-06-08 08:52:23	MarkDuplicates	Read   378,000,000 records.  Elapsed time: 00:11:47s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,129,651
INFO	2026-06-08 08:52:23	MarkDuplicates	Tracking 931827 as yet unmatched pairs. 76589 records in RAM.
INFO	2026-06-08 08:52:25	MarkDuplicates	Read   379,000,000 records.  Elapsed time: 00:11:48s.  Time for last 1,000,000:    1s.  Last read position: chr12:50,732,361
INFO	2026-06-08 08:52:25	MarkDuplicates	Tracking 928879 as yet unmatched pairs. 73640 records in RAM.
INFO	2026-06-08 08:52:26	MarkDuplicates	Read   380,000,000 records.  Elapsed time: 00:11:50s.  Time for last 1,000,000:    1s.  Last read position: chr12:52,900,620
INFO	2026-06-08 08:52:26	MarkDuplicates	Tracking 925799 as yet unmatched pairs. 70557 records in RAM.
INFO	2026-06-08 08:52:28	MarkDuplicates	Read   381,000,000 records.  Elapsed time: 00:11:51s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,295,594
INFO	2026-06-08 08:52:28	MarkDuplicates	Tracking 922264 as yet unmatched pairs. 67016 records in RAM.
INFO	2026-06-08 08:52:29	MarkDuplicates	Read   382,000,000 records.  Elapsed time: 00:11:53s.  Time for last 1,000,000:    1s.  Last read position: chr12:54,281,456
INFO	2026-06-08 08:52:29	MarkDuplicates	Tracking 921150 as yet unmatched pairs. 65887 records in RAM.
INFO	2026-06-08 08:52:31	MarkDuplicates	Read   383,000,000 records.  Elapsed time: 00:11:54s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,004,873
INFO	2026-06-08 08:52:31	MarkDuplicates	Tracking 916715 as yet unmatched pairs. 61446 records in RAM.
INFO	2026-06-08 08:52:32	MarkDuplicates	Read   384,000,000 records.  Elapsed time: 00:11:56s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,181,764
INFO	2026-06-08 08:52:32	MarkDuplicates	Tracking 913725 as yet unmatched pairs. 58454 records in RAM.
INFO	2026-06-08 08:52:34	MarkDuplicates	Read   385,000,000 records.  Elapsed time: 00:11:57s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,712,830
INFO	2026-06-08 08:52:34	MarkDuplicates	Tracking 911992 as yet unmatched pairs. 56708 records in RAM.
INFO	2026-06-08 08:52:36	MarkDuplicates	Read   386,000,000 records.  Elapsed time: 00:11:59s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,099,294
INFO	2026-06-08 08:52:36	MarkDuplicates	Tracking 909043 as yet unmatched pairs. 53748 records in RAM.
INFO	2026-06-08 08:52:37	MarkDuplicates	Read   387,000,000 records.  Elapsed time: 00:12:01s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,178,936
INFO	2026-06-08 08:52:37	MarkDuplicates	Tracking 904736 as yet unmatched pairs. 49434 records in RAM.
INFO	2026-06-08 08:52:38	MarkDuplicates	Read   388,000,000 records.  Elapsed time: 00:12:02s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,525,818
INFO	2026-06-08 08:52:38	MarkDuplicates	Tracking 901365 as yet unmatched pairs. 46062 records in RAM.
INFO	2026-06-08 08:52:40	MarkDuplicates	Read   389,000,000 records.  Elapsed time: 00:12:04s.  Time for last 1,000,000:    1s.  Last read position: chr12:64,759,111
INFO	2026-06-08 08:52:40	MarkDuplicates	Tracking 897909 as yet unmatched pairs. 42601 records in RAM.
INFO	2026-06-08 08:52:42	MarkDuplicates	Read   390,000,000 records.  Elapsed time: 00:12:05s.  Time for last 1,000,000:    1s.  Last read position: chr12:71,638,441
INFO	2026-06-08 08:52:42	MarkDuplicates	Tracking 895007 as yet unmatched pairs. 39698 records in RAM.
INFO	2026-06-08 08:52:43	MarkDuplicates	Read   391,000,000 records.  Elapsed time: 00:12:07s.  Time for last 1,000,000:    1s.  Last read position: chr12:93,411,228
INFO	2026-06-08 08:52:43	MarkDuplicates	Tracking 891968 as yet unmatched pairs. 36656 records in RAM.
INFO	2026-06-08 08:52:45	MarkDuplicates	Read   392,000,000 records.  Elapsed time: 00:12:08s.  Time for last 1,000,000:    1s.  Last read position: chr12:103,932,374
INFO	2026-06-08 08:52:45	MarkDuplicates	Tracking 889296 as yet unmatched pairs. 33981 records in RAM.
INFO	2026-06-08 08:52:46	MarkDuplicates	Read   393,000,000 records.  Elapsed time: 00:12:10s.  Time for last 1,000,000:    1s.  Last read position: chr12:109,092,695
INFO	2026-06-08 08:52:46	MarkDuplicates	Tracking 886067 as yet unmatched pairs. 30751 records in RAM.
INFO	2026-06-08 08:52:48	MarkDuplicates	Read   394,000,000 records.  Elapsed time: 00:12:11s.  Time for last 1,000,000:    1s.  Last read position: chr12:112,022,569
INFO	2026-06-08 08:52:48	MarkDuplicates	Tracking 882523 as yet unmatched pairs. 27204 records in RAM.
INFO	2026-06-08 08:52:49	MarkDuplicates	Read   395,000,000 records.  Elapsed time: 00:12:13s.  Time for last 1,000,000:    1s.  Last read position: chr12:113,273,244
INFO	2026-06-08 08:52:49	MarkDuplicates	Tracking 879362 as yet unmatched pairs. 24031 records in RAM.
INFO	2026-06-08 08:52:51	MarkDuplicates	Read   396,000,000 records.  Elapsed time: 00:12:15s.  Time for last 1,000,000:    1s.  Last read position: chr12:119,194,956
INFO	2026-06-08 08:52:51	MarkDuplicates	Tracking 875499 as yet unmatched pairs. 20165 records in RAM.
INFO	2026-06-08 08:52:53	MarkDuplicates	Read   397,000,000 records.  Elapsed time: 00:12:16s.  Time for last 1,000,000:    1s.  Last read position: chr12:120,687,408
INFO	2026-06-08 08:52:53	MarkDuplicates	Tracking 872089 as yet unmatched pairs. 16752 records in RAM.
INFO	2026-06-08 08:52:54	MarkDuplicates	Read   398,000,000 records.  Elapsed time: 00:12:18s.  Time for last 1,000,000:    1s.  Last read position: chr12:122,138,253
INFO	2026-06-08 08:52:54	MarkDuplicates	Tracking 868416 as yet unmatched pairs. 13076 records in RAM.
INFO	2026-06-08 08:52:56	MarkDuplicates	Read   399,000,000 records.  Elapsed time: 00:12:20s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,332,456
INFO	2026-06-08 08:52:56	MarkDuplicates	Tracking 865250 as yet unmatched pairs. 9902 records in RAM.
INFO	2026-06-08 08:52:58	MarkDuplicates	Read   400,000,000 records.  Elapsed time: 00:12:21s.  Time for last 1,000,000:    1s.  Last read position: chr12:130,535,408
INFO	2026-06-08 08:52:58	MarkDuplicates	Tracking 861351 as yet unmatched pairs. 5998 records in RAM.
INFO	2026-06-08 08:52:59	MarkDuplicates	Read   401,000,000 records.  Elapsed time: 00:12:23s.  Time for last 1,000,000:    1s.  Last read position: chr12:132,635,895
INFO	2026-06-08 08:52:59	MarkDuplicates	Tracking 857334 as yet unmatched pairs. 1978 records in RAM.
INFO	2026-06-08 08:53:02	MarkDuplicates	Read   402,000,000 records.  Elapsed time: 00:12:26s.  Time for last 1,000,000:    2s.  Last read position: chr13:20,948,438
INFO	2026-06-08 08:53:02	MarkDuplicates	Tracking 853936 as yet unmatched pairs. 23635 records in RAM.
INFO	2026-06-08 08:53:04	MarkDuplicates	Read   403,000,000 records.  Elapsed time: 00:12:27s.  Time for last 1,000,000:    1s.  Last read position: chr13:28,280,433
INFO	2026-06-08 08:53:04	MarkDuplicates	Tracking 851034 as yet unmatched pairs. 20721 records in RAM.
INFO	2026-06-08 08:53:05	MarkDuplicates	Read   404,000,000 records.  Elapsed time: 00:12:29s.  Time for last 1,000,000:    1s.  Last read position: chr13:41,431,903
INFO	2026-06-08 08:53:05	MarkDuplicates	Tracking 848083 as yet unmatched pairs. 17753 records in RAM.
INFO	2026-06-08 08:53:07	MarkDuplicates	Read   405,000,000 records.  Elapsed time: 00:12:31s.  Time for last 1,000,000:    1s.  Last read position: chr13:49,207,246
INFO	2026-06-08 08:53:07	MarkDuplicates	Tracking 844952 as yet unmatched pairs. 14609 records in RAM.
INFO	2026-06-08 08:53:08	MarkDuplicates	Read   406,000,000 records.  Elapsed time: 00:12:32s.  Time for last 1,000,000:    1s.  Last read position: chr13:75,856,515
INFO	2026-06-08 08:53:08	MarkDuplicates	Tracking 842182 as yet unmatched pairs. 11834 records in RAM.
INFO	2026-06-08 08:53:10	MarkDuplicates	Read   407,000,000 records.  Elapsed time: 00:12:34s.  Time for last 1,000,000:    1s.  Last read position: chr13:99,539,515
INFO	2026-06-08 08:53:10	MarkDuplicates	Tracking 838867 as yet unmatched pairs. 8515 records in RAM.
INFO	2026-06-08 08:53:11	MarkDuplicates	Read   408,000,000 records.  Elapsed time: 00:12:35s.  Time for last 1,000,000:    1s.  Last read position: chr13:110,450,452
INFO	2026-06-08 08:53:11	MarkDuplicates	Tracking 835088 as yet unmatched pairs. 4729 records in RAM.
INFO	2026-06-08 08:53:13	MarkDuplicates	Read   409,000,000 records.  Elapsed time: 00:12:37s.  Time for last 1,000,000:    1s.  Last read position: chr13:113,823,433
INFO	2026-06-08 08:53:13	MarkDuplicates	Tracking 830968 as yet unmatched pairs. 606 records in RAM.
INFO	2026-06-08 08:53:15	MarkDuplicates	Read   410,000,000 records.  Elapsed time: 00:12:39s.  Time for last 1,000,000:    1s.  Last read position: chr14:21,487,646
INFO	2026-06-08 08:53:15	MarkDuplicates	Tracking 827571 as yet unmatched pairs. 57092 records in RAM.
INFO	2026-06-08 08:53:16	MarkDuplicates	Read   411,000,000 records.  Elapsed time: 00:12:40s.  Time for last 1,000,000:    1s.  Last read position: chr14:23,276,969
INFO	2026-06-08 08:53:16	MarkDuplicates	Tracking 824091 as yet unmatched pairs. 53603 records in RAM.
INFO	2026-06-08 08:53:18	MarkDuplicates	Read   412,000,000 records.  Elapsed time: 00:12:42s.  Time for last 1,000,000:    1s.  Last read position: chr14:24,305,621
INFO	2026-06-08 08:53:18	MarkDuplicates	Tracking 820661 as yet unmatched pairs. 50172 records in RAM.
INFO	2026-06-08 08:53:20	MarkDuplicates	Read   413,000,000 records.  Elapsed time: 00:12:43s.  Time for last 1,000,000:    1s.  Last read position: chr14:35,046,549
INFO	2026-06-08 08:53:20	MarkDuplicates	Tracking 817500 as yet unmatched pairs. 47003 records in RAM.
INFO	2026-06-08 08:53:21	MarkDuplicates	Read   414,000,000 records.  Elapsed time: 00:12:45s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,862,579
INFO	2026-06-08 08:53:21	MarkDuplicates	Tracking 815199 as yet unmatched pairs. 44674 records in RAM.
INFO	2026-06-08 08:53:23	MarkDuplicates	Read   415,000,000 records.  Elapsed time: 00:12:46s.  Time for last 1,000,000:    1s.  Last read position: chr14:55,598,301
INFO	2026-06-08 08:53:23	MarkDuplicates	Tracking 811401 as yet unmatched pairs. 40860 records in RAM.
INFO	2026-06-08 08:53:24	MarkDuplicates	Read   416,000,000 records.  Elapsed time: 00:12:48s.  Time for last 1,000,000:    1s.  Last read position: chr14:64,212,954
INFO	2026-06-08 08:53:24	MarkDuplicates	Tracking 808482 as yet unmatched pairs. 37940 records in RAM.
INFO	2026-06-08 08:53:26	MarkDuplicates	Read   417,000,000 records.  Elapsed time: 00:12:49s.  Time for last 1,000,000:    1s.  Last read position: chr14:68,790,222
INFO	2026-06-08 08:53:26	MarkDuplicates	Tracking 805921 as yet unmatched pairs. 35373 records in RAM.
INFO	2026-06-08 08:53:27	MarkDuplicates	Read   418,000,000 records.  Elapsed time: 00:12:51s.  Time for last 1,000,000:    1s.  Last read position: chr14:73,173,593
INFO	2026-06-08 08:53:27	MarkDuplicates	Tracking 802026 as yet unmatched pairs. 31475 records in RAM.
INFO	2026-06-08 08:53:29	MarkDuplicates	Read   419,000,000 records.  Elapsed time: 00:12:52s.  Time for last 1,000,000:    1s.  Last read position: chr14:75,279,931
INFO	2026-06-08 08:53:29	MarkDuplicates	Tracking 800189 as yet unmatched pairs. 29635 records in RAM.
INFO	2026-06-08 08:53:30	MarkDuplicates	Read   420,000,000 records.  Elapsed time: 00:12:54s.  Time for last 1,000,000:    1s.  Last read position: chr14:89,162,704
INFO	2026-06-08 08:53:30	MarkDuplicates	Tracking 795643 as yet unmatched pairs. 25083 records in RAM.
INFO	2026-06-08 08:53:32	MarkDuplicates	Read   421,000,000 records.  Elapsed time: 00:12:56s.  Time for last 1,000,000:    1s.  Last read position: chr14:94,114,860
INFO	2026-06-08 08:53:32	MarkDuplicates	Tracking 792126 as yet unmatched pairs. 21560 records in RAM.
INFO	2026-06-08 08:53:33	MarkDuplicates	Read   422,000,000 records.  Elapsed time: 00:12:57s.  Time for last 1,000,000:    1s.  Last read position: chr14:101,995,217
INFO	2026-06-08 08:53:33	MarkDuplicates	Tracking 788524 as yet unmatched pairs. 17936 records in RAM.
INFO	2026-06-08 08:53:35	MarkDuplicates	Read   423,000,000 records.  Elapsed time: 00:12:59s.  Time for last 1,000,000:    1s.  Last read position: chr14:102,954,638
INFO	2026-06-08 08:53:35	MarkDuplicates	Tracking 784672 as yet unmatched pairs. 14082 records in RAM.
INFO	2026-06-08 08:53:37	MarkDuplicates	Read   424,000,000 records.  Elapsed time: 00:13:01s.  Time for last 1,000,000:    1s.  Last read position: chr14:104,703,198
INFO	2026-06-08 08:53:37	MarkDuplicates	Tracking 780675 as yet unmatched pairs. 10080 records in RAM.
INFO	2026-06-08 08:53:39	MarkDuplicates	Read   425,000,000 records.  Elapsed time: 00:13:03s.  Time for last 1,000,000:    1s.  Last read position: chr14:104,941,765
INFO	2026-06-08 08:53:39	MarkDuplicates	Tracking 776812 as yet unmatched pairs. 6210 records in RAM.
INFO	2026-06-08 08:53:40	MarkDuplicates	Read   426,000,000 records.  Elapsed time: 00:13:04s.  Time for last 1,000,000:    1s.  Last read position: chr14:104,952,797
INFO	2026-06-08 08:53:40	MarkDuplicates	Tracking 774021 as yet unmatched pairs. 3419 records in RAM.
INFO	2026-06-08 08:53:42	MarkDuplicates	Read   427,000,000 records.  Elapsed time: 00:13:06s.  Time for last 1,000,000:    1s.  Last read position: chr15:22,577,291
INFO	2026-06-08 08:53:42	MarkDuplicates	Tracking 770293 as yet unmatched pairs. 48173 records in RAM.
INFO	2026-06-08 08:53:43	MarkDuplicates	Read   428,000,000 records.  Elapsed time: 00:13:07s.  Time for last 1,000,000:    1s.  Last read position: chr15:32,730,879
INFO	2026-06-08 08:53:43	MarkDuplicates	Tracking 767889 as yet unmatched pairs. 45765 records in RAM.
INFO	2026-06-08 08:53:45	MarkDuplicates	Read   429,000,000 records.  Elapsed time: 00:13:09s.  Time for last 1,000,000:    1s.  Last read position: chr15:39,593,001
INFO	2026-06-08 08:53:45	MarkDuplicates	Tracking 764942 as yet unmatched pairs. 42816 records in RAM.
INFO	2026-06-08 08:53:46	MarkDuplicates	Read   430,000,000 records.  Elapsed time: 00:13:10s.  Time for last 1,000,000:    1s.  Last read position: chr15:41,762,210
INFO	2026-06-08 08:53:46	MarkDuplicates	Tracking 761259 as yet unmatched pairs. 39128 records in RAM.
INFO	2026-06-08 08:53:48	MarkDuplicates	Read   431,000,000 records.  Elapsed time: 00:13:12s.  Time for last 1,000,000:    1s.  Last read position: chr15:43,699,028
INFO	2026-06-08 08:53:48	MarkDuplicates	Tracking 758363 as yet unmatched pairs. 36230 records in RAM.
INFO	2026-06-08 08:53:50	MarkDuplicates	Read   432,000,000 records.  Elapsed time: 00:13:13s.  Time for last 1,000,000:    1s.  Last read position: chr15:49,137,214
INFO	2026-06-08 08:53:50	MarkDuplicates	Tracking 755203 as yet unmatched pairs. 33070 records in RAM.
INFO	2026-06-08 08:53:51	MarkDuplicates	Read   433,000,000 records.  Elapsed time: 00:13:15s.  Time for last 1,000,000:    1s.  Last read position: chr15:60,351,197
INFO	2026-06-08 08:53:51	MarkDuplicates	Tracking 752610 as yet unmatched pairs. 30462 records in RAM.
INFO	2026-06-08 08:53:53	MarkDuplicates	Read   434,000,000 records.  Elapsed time: 00:13:16s.  Time for last 1,000,000:    1s.  Last read position: chr15:64,688,784
INFO	2026-06-08 08:53:53	MarkDuplicates	Tracking 749175 as yet unmatched pairs. 27019 records in RAM.
INFO	2026-06-08 08:53:54	MarkDuplicates	Read   435,000,000 records.  Elapsed time: 00:13:18s.  Time for last 1,000,000:    1s.  Last read position: chr15:71,141,523
INFO	2026-06-08 08:53:54	MarkDuplicates	Tracking 745399 as yet unmatched pairs. 23241 records in RAM.
INFO	2026-06-08 08:53:55	MarkDuplicates	Read   436,000,000 records.  Elapsed time: 00:13:19s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,191,175
INFO	2026-06-08 08:53:55	MarkDuplicates	Tracking 742022 as yet unmatched pairs. 19862 records in RAM.
INFO	2026-06-08 08:53:57	MarkDuplicates	Read   437,000,000 records.  Elapsed time: 00:13:21s.  Time for last 1,000,000:    1s.  Last read position: chr15:77,056,064
INFO	2026-06-08 08:53:57	MarkDuplicates	Tracking 738624 as yet unmatched pairs. 16460 records in RAM.
INFO	2026-06-08 08:53:59	MarkDuplicates	Read   438,000,000 records.  Elapsed time: 00:13:22s.  Time for last 1,000,000:    1s.  Last read position: chr15:82,521,403
INFO	2026-06-08 08:53:59	MarkDuplicates	Tracking 735381 as yet unmatched pairs. 13211 records in RAM.
INFO	2026-06-08 08:54:00	MarkDuplicates	Read   439,000,000 records.  Elapsed time: 00:13:24s.  Time for last 1,000,000:    1s.  Last read position: chr15:85,533,824
INFO	2026-06-08 08:54:00	MarkDuplicates	Tracking 733140 as yet unmatched pairs. 10966 records in RAM.
INFO	2026-06-08 08:54:01	MarkDuplicates	Read   440,000,000 records.  Elapsed time: 00:13:25s.  Time for last 1,000,000:    1s.  Last read position: chr15:90,231,378
INFO	2026-06-08 08:54:01	MarkDuplicates	Tracking 729611 as yet unmatched pairs. 7424 records in RAM.
INFO	2026-06-08 08:54:03	MarkDuplicates	Read   441,000,000 records.  Elapsed time: 00:13:26s.  Time for last 1,000,000:    1s.  Last read position: chr15:98,707,689
INFO	2026-06-08 08:54:03	MarkDuplicates	Tracking 726074 as yet unmatched pairs. 3885 records in RAM.
INFO	2026-06-08 08:54:05	MarkDuplicates	Read   442,000,000 records.  Elapsed time: 00:13:28s.  Time for last 1,000,000:    2s.  Last read position: chr15:101,724,101
INFO	2026-06-08 08:54:05	MarkDuplicates	Tracking 722377 as yet unmatched pairs. 183 records in RAM.
INFO	2026-06-08 08:54:07	MarkDuplicates	Read   443,000,000 records.  Elapsed time: 00:13:31s.  Time for last 1,000,000:    2s.  Last read position: chr16:553,430
INFO	2026-06-08 08:54:07	MarkDuplicates	Tracking 718372 as yet unmatched pairs. 116638 records in RAM.
INFO	2026-06-08 08:54:09	MarkDuplicates	Read   444,000,000 records.  Elapsed time: 00:13:32s.  Time for last 1,000,000:    1s.  Last read position: chr16:768,689
INFO	2026-06-08 08:54:09	MarkDuplicates	Tracking 715405 as yet unmatched pairs. 113671 records in RAM.
INFO	2026-06-08 08:54:10	MarkDuplicates	Read   445,000,000 records.  Elapsed time: 00:13:34s.  Time for last 1,000,000:    1s.  Last read position: chr16:1,698,771
INFO	2026-06-08 08:54:10	MarkDuplicates	Tracking 709542 as yet unmatched pairs. 107803 records in RAM.
INFO	2026-06-08 08:54:12	MarkDuplicates	Read   446,000,000 records.  Elapsed time: 00:13:36s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,088,103
INFO	2026-06-08 08:54:12	MarkDuplicates	Tracking 704679 as yet unmatched pairs. 102932 records in RAM.
INFO	2026-06-08 08:54:13	MarkDuplicates	Read   447,000,000 records.  Elapsed time: 00:13:37s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,253,949
INFO	2026-06-08 08:54:13	MarkDuplicates	Tracking 701370 as yet unmatched pairs. 99617 records in RAM.
INFO	2026-06-08 08:54:15	MarkDuplicates	Read   448,000,000 records.  Elapsed time: 00:13:39s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,765,318
INFO	2026-06-08 08:54:15	MarkDuplicates	Tracking 697317 as yet unmatched pairs. 95561 records in RAM.
INFO	2026-06-08 08:54:16	MarkDuplicates	Read   449,000,000 records.  Elapsed time: 00:13:40s.  Time for last 1,000,000:    1s.  Last read position: chr16:3,031,073
INFO	2026-06-08 08:54:16	MarkDuplicates	Tracking 692979 as yet unmatched pairs. 91217 records in RAM.
INFO	2026-06-08 08:54:18	MarkDuplicates	Read   450,000,000 records.  Elapsed time: 00:13:41s.  Time for last 1,000,000:    1s.  Last read position: chr16:4,461,875
INFO	2026-06-08 08:54:18	MarkDuplicates	Tracking 689544 as yet unmatched pairs. 87779 records in RAM.
INFO	2026-06-08 08:54:19	MarkDuplicates	Read   451,000,000 records.  Elapsed time: 00:13:43s.  Time for last 1,000,000:    1s.  Last read position: chr16:11,751,496
INFO	2026-06-08 08:54:19	MarkDuplicates	Tracking 685995 as yet unmatched pairs. 84217 records in RAM.
INFO	2026-06-08 08:54:21	MarkDuplicates	Read   452,000,000 records.  Elapsed time: 00:13:45s.  Time for last 1,000,000:    1s.  Last read position: chr16:14,922,191
INFO	2026-06-08 08:54:21	MarkDuplicates	Tracking 683969 as yet unmatched pairs. 82190 records in RAM.
INFO	2026-06-08 08:54:22	MarkDuplicates	Read   453,000,000 records.  Elapsed time: 00:13:46s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,623,094
INFO	2026-06-08 08:54:22	MarkDuplicates	Tracking 682169 as yet unmatched pairs. 80390 records in RAM.
INFO	2026-06-08 08:54:24	MarkDuplicates	Read   454,000,000 records.  Elapsed time: 00:13:47s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,724,777
INFO	2026-06-08 08:54:24	MarkDuplicates	Tracking 679568 as yet unmatched pairs. 77788 records in RAM.
INFO	2026-06-08 08:54:25	MarkDuplicates	Read   455,000,000 records.  Elapsed time: 00:13:49s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,759,662
INFO	2026-06-08 08:54:25	MarkDuplicates	Tracking 676758 as yet unmatched pairs. 74975 records in RAM.
INFO	2026-06-08 08:54:27	MarkDuplicates	Read   456,000,000 records.  Elapsed time: 00:13:50s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,317,984
INFO	2026-06-08 08:54:27	MarkDuplicates	Tracking 673322 as yet unmatched pairs. 71537 records in RAM.
INFO	2026-06-08 08:54:28	MarkDuplicates	Read   457,000,000 records.  Elapsed time: 00:13:51s.  Time for last 1,000,000:    1s.  Last read position: chr16:17,108,694
INFO	2026-06-08 08:54:28	MarkDuplicates	Tracking 672035 as yet unmatched pairs. 70250 records in RAM.
INFO	2026-06-08 08:54:29	MarkDuplicates	Read   458,000,000 records.  Elapsed time: 00:13:53s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,391,173
INFO	2026-06-08 08:54:29	MarkDuplicates	Tracking 670644 as yet unmatched pairs. 68859 records in RAM.
INFO	2026-06-08 08:54:30	MarkDuplicates	Read   459,000,000 records.  Elapsed time: 00:13:54s.  Time for last 1,000,000:    1s.  Last read position: chr16:19,629,779
INFO	2026-06-08 08:54:30	MarkDuplicates	Tracking 668059 as yet unmatched pairs. 66270 records in RAM.
INFO	2026-06-08 08:54:32	MarkDuplicates	Read   460,000,000 records.  Elapsed time: 00:13:56s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,835,510
INFO	2026-06-08 08:54:32	MarkDuplicates	Tracking 666837 as yet unmatched pairs. 65048 records in RAM.
INFO	2026-06-08 08:54:33	MarkDuplicates	Read   461,000,000 records.  Elapsed time: 00:13:57s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,534,290
INFO	2026-06-08 08:54:33	MarkDuplicates	Tracking 665463 as yet unmatched pairs. 63672 records in RAM.
INFO	2026-06-08 08:54:34	MarkDuplicates	Read   462,000,000 records.  Elapsed time: 00:13:58s.  Time for last 1,000,000:    1s.  Last read position: chr16:27,363,463
INFO	2026-06-08 08:54:34	MarkDuplicates	Tracking 663196 as yet unmatched pairs. 61402 records in RAM.
INFO	2026-06-08 08:54:36	MarkDuplicates	Read   463,000,000 records.  Elapsed time: 00:13:59s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,735,019
INFO	2026-06-08 08:54:36	MarkDuplicates	Tracking 660583 as yet unmatched pairs. 58788 records in RAM.
INFO	2026-06-08 08:54:37	MarkDuplicates	Read   464,000,000 records.  Elapsed time: 00:14:01s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,457,927
INFO	2026-06-08 08:54:37	MarkDuplicates	Tracking 658187 as yet unmatched pairs. 56390 records in RAM.
INFO	2026-06-08 08:54:39	MarkDuplicates	Read   465,000,000 records.  Elapsed time: 00:14:02s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,844,800
INFO	2026-06-08 08:54:39	MarkDuplicates	Tracking 655340 as yet unmatched pairs. 53542 records in RAM.
INFO	2026-06-08 08:54:40	MarkDuplicates	Read   466,000,000 records.  Elapsed time: 00:14:04s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,224,693
INFO	2026-06-08 08:54:40	MarkDuplicates	Tracking 651885 as yet unmatched pairs. 50082 records in RAM.
INFO	2026-06-08 08:54:42	MarkDuplicates	Read   467,000,000 records.  Elapsed time: 00:14:06s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,724,641
INFO	2026-06-08 08:54:42	MarkDuplicates	Tracking 649172 as yet unmatched pairs. 47364 records in RAM.
INFO	2026-06-08 08:54:44	MarkDuplicates	Read   468,000,000 records.  Elapsed time: 00:14:08s.  Time for last 1,000,000:    1s.  Last read position: chr16:31,185,152
INFO	2026-06-08 08:54:44	MarkDuplicates	Tracking 645933 as yet unmatched pairs. 44125 records in RAM.
INFO	2026-06-08 08:54:46	MarkDuplicates	Read   469,000,000 records.  Elapsed time: 00:14:09s.  Time for last 1,000,000:    1s.  Last read position: chr16:50,323,588
INFO	2026-06-08 08:54:46	MarkDuplicates	Tracking 641967 as yet unmatched pairs. 40154 records in RAM.
INFO	2026-06-08 08:54:47	MarkDuplicates	Read   470,000,000 records.  Elapsed time: 00:14:11s.  Time for last 1,000,000:    1s.  Last read position: chr16:57,067,441
INFO	2026-06-08 08:54:47	MarkDuplicates	Tracking 638861 as yet unmatched pairs. 37038 records in RAM.
INFO	2026-06-08 08:54:49	MarkDuplicates	Read   471,000,000 records.  Elapsed time: 00:14:12s.  Time for last 1,000,000:    1s.  Last read position: chr16:66,749,288
INFO	2026-06-08 08:54:49	MarkDuplicates	Tracking 635772 as yet unmatched pairs. 33949 records in RAM.
INFO	2026-06-08 08:54:50	MarkDuplicates	Read   472,000,000 records.  Elapsed time: 00:14:14s.  Time for last 1,000,000:    1s.  Last read position: chr16:67,868,501
INFO	2026-06-08 08:54:50	MarkDuplicates	Tracking 631938 as yet unmatched pairs. 30113 records in RAM.
INFO	2026-06-08 08:54:52	MarkDuplicates	Read   473,000,000 records.  Elapsed time: 00:14:15s.  Time for last 1,000,000:    1s.  Last read position: chr16:69,329,167
INFO	2026-06-08 08:54:52	MarkDuplicates	Tracking 628051 as yet unmatched pairs. 26221 records in RAM.
INFO	2026-06-08 08:54:53	MarkDuplicates	Read   474,000,000 records.  Elapsed time: 00:14:17s.  Time for last 1,000,000:    1s.  Last read position: chr16:70,663,821
INFO	2026-06-08 08:54:53	MarkDuplicates	Tracking 625291 as yet unmatched pairs. 23453 records in RAM.
INFO	2026-06-08 08:54:55	MarkDuplicates	Read   475,000,000 records.  Elapsed time: 00:14:18s.  Time for last 1,000,000:    1s.  Last read position: chr16:74,456,653
INFO	2026-06-08 08:54:55	MarkDuplicates	Tracking 621695 as yet unmatched pairs. 19855 records in RAM.
INFO	2026-06-08 08:54:56	MarkDuplicates	Read   476,000,000 records.  Elapsed time: 00:14:20s.  Time for last 1,000,000:    1s.  Last read position: chr16:84,093,198
INFO	2026-06-08 08:54:56	MarkDuplicates	Tracking 617844 as yet unmatched pairs. 15995 records in RAM.
INFO	2026-06-08 08:54:58	MarkDuplicates	Read   477,000,000 records.  Elapsed time: 00:14:21s.  Time for last 1,000,000:    1s.  Last read position: chr16:87,709,270
INFO	2026-06-08 08:54:58	MarkDuplicates	Tracking 613932 as yet unmatched pairs. 12075 records in RAM.
INFO	2026-06-08 08:54:59	MarkDuplicates	Read   478,000,000 records.  Elapsed time: 00:14:23s.  Time for last 1,000,000:    1s.  Last read position: chr16:88,724,960
INFO	2026-06-08 08:54:59	MarkDuplicates	Tracking 610029 as yet unmatched pairs. 8158 records in RAM.
INFO	2026-06-08 08:55:01	MarkDuplicates	Read   479,000,000 records.  Elapsed time: 00:14:24s.  Time for last 1,000,000:    1s.  Last read position: chr16:89,561,289
INFO	2026-06-08 08:55:01	MarkDuplicates	Tracking 610186 as yet unmatched pairs. 8314 records in RAM.
INFO	2026-06-08 08:55:03	MarkDuplicates	Read   480,000,000 records.  Elapsed time: 00:14:27s.  Time for last 1,000,000:    2s.  Last read position: chr17:443,270
INFO	2026-06-08 08:55:03	MarkDuplicates	Tracking 601695 as yet unmatched pairs. 174662 records in RAM.
INFO	2026-06-08 08:55:05	MarkDuplicates	Read   481,000,000 records.  Elapsed time: 00:14:29s.  Time for last 1,000,000:    1s.  Last read position: chr17:1,771,099
INFO	2026-06-08 08:55:05	MarkDuplicates	Tracking 598191 as yet unmatched pairs. 171158 records in RAM.
INFO	2026-06-08 08:55:07	MarkDuplicates	Read   482,000,000 records.  Elapsed time: 00:14:31s.  Time for last 1,000,000:    1s.  Last read position: chr17:4,672,922
INFO	2026-06-08 08:55:07	MarkDuplicates	Tracking 594733 as yet unmatched pairs. 167693 records in RAM.
INFO	2026-06-08 08:55:08	MarkDuplicates	Read   483,000,000 records.  Elapsed time: 00:14:32s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,220,519
INFO	2026-06-08 08:55:08	MarkDuplicates	Tracking 591390 as yet unmatched pairs. 164346 records in RAM.
INFO	2026-06-08 08:55:10	MarkDuplicates	Read   484,000,000 records.  Elapsed time: 00:14:33s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,566,984
INFO	2026-06-08 08:55:10	MarkDuplicates	Tracking 587768 as yet unmatched pairs. 160723 records in RAM.
INFO	2026-06-08 08:55:11	MarkDuplicates	Read   485,000,000 records.  Elapsed time: 00:14:35s.  Time for last 1,000,000:    1s.  Last read position: chr17:8,255,592
INFO	2026-06-08 08:55:11	MarkDuplicates	Tracking 584322 as yet unmatched pairs. 157274 records in RAM.
INFO	2026-06-08 08:55:13	MarkDuplicates	Read   486,000,000 records.  Elapsed time: 00:14:37s.  Time for last 1,000,000:    1s.  Last read position: chr17:17,147,317
INFO	2026-06-08 08:55:13	MarkDuplicates	Tracking 581378 as yet unmatched pairs. 154325 records in RAM.
INFO	2026-06-08 08:55:14	MarkDuplicates	Read   487,000,000 records.  Elapsed time: 00:14:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:19,331,889
INFO	2026-06-08 08:55:14	MarkDuplicates	Tracking 577579 as yet unmatched pairs. 150524 records in RAM.
INFO	2026-06-08 08:55:16	MarkDuplicates	Read   488,000,000 records.  Elapsed time: 00:14:40s.  Time for last 1,000,000:    1s.  Last read position: chr17:28,610,491
INFO	2026-06-08 08:55:16	MarkDuplicates	Tracking 574324 as yet unmatched pairs. 147266 records in RAM.
INFO	2026-06-08 08:55:18	MarkDuplicates	Read   489,000,000 records.  Elapsed time: 00:14:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:29,074,358
INFO	2026-06-08 08:55:18	MarkDuplicates	Tracking 571095 as yet unmatched pairs. 144036 records in RAM.
INFO	2026-06-08 08:55:19	MarkDuplicates	Read   490,000,000 records.  Elapsed time: 00:14:43s.  Time for last 1,000,000:    1s.  Last read position: chr17:30,427,443
INFO	2026-06-08 08:55:19	MarkDuplicates	Tracking 567724 as yet unmatched pairs. 140664 records in RAM.
INFO	2026-06-08 08:55:21	MarkDuplicates	Read   491,000,000 records.  Elapsed time: 00:14:44s.  Time for last 1,000,000:    1s.  Last read position: chr17:32,931,589
INFO	2026-06-08 08:55:21	MarkDuplicates	Tracking 564626 as yet unmatched pairs. 137563 records in RAM.
INFO	2026-06-08 08:55:22	MarkDuplicates	Read   492,000,000 records.  Elapsed time: 00:14:46s.  Time for last 1,000,000:    1s.  Last read position: chr17:36,384,628
INFO	2026-06-08 08:55:22	MarkDuplicates	Tracking 561793 as yet unmatched pairs. 134720 records in RAM.
INFO	2026-06-08 08:55:24	MarkDuplicates	Read   493,000,000 records.  Elapsed time: 00:14:47s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,299,437
INFO	2026-06-08 08:55:24	MarkDuplicates	Tracking 559929 as yet unmatched pairs. 132853 records in RAM.
INFO	2026-06-08 08:55:25	MarkDuplicates	Read   494,000,000 records.  Elapsed time: 00:14:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,918,679
INFO	2026-06-08 08:55:25	MarkDuplicates	Tracking 556532 as yet unmatched pairs. 129455 records in RAM.
INFO	2026-06-08 08:55:27	MarkDuplicates	Read   495,000,000 records.  Elapsed time: 00:14:50s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,710,135
INFO	2026-06-08 08:55:27	MarkDuplicates	Tracking 554368 as yet unmatched pairs. 127288 records in RAM.
INFO	2026-06-08 08:55:28	MarkDuplicates	Read   496,000,000 records.  Elapsed time: 00:14:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:39,727,510
INFO	2026-06-08 08:55:28	MarkDuplicates	Tracking 549525 as yet unmatched pairs. 122445 records in RAM.
INFO	2026-06-08 08:55:30	MarkDuplicates	Read   497,000,000 records.  Elapsed time: 00:14:53s.  Time for last 1,000,000:    1s.  Last read position: chr17:40,878,314
INFO	2026-06-08 08:55:30	MarkDuplicates	Tracking 545459 as yet unmatched pairs. 118374 records in RAM.
INFO	2026-06-08 08:55:31	MarkDuplicates	Read   498,000,000 records.  Elapsed time: 00:14:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:42,581,865
INFO	2026-06-08 08:55:31	MarkDuplicates	Tracking 541619 as yet unmatched pairs. 114532 records in RAM.
INFO	2026-06-08 08:55:33	MarkDuplicates	Read   499,000,000 records.  Elapsed time: 00:14:57s.  Time for last 1,000,000:    1s.  Last read position: chr17:44,117,549
INFO	2026-06-08 08:55:33	MarkDuplicates	Tracking 538129 as yet unmatched pairs. 111042 records in RAM.
INFO	2026-06-08 08:55:34	MarkDuplicates	Read   500,000,000 records.  Elapsed time: 00:14:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:46,297,224
INFO	2026-06-08 08:55:34	MarkDuplicates	Tracking 534648 as yet unmatched pairs. 107560 records in RAM.
INFO	2026-06-08 08:55:36	MarkDuplicates	Read   501,000,000 records.  Elapsed time: 00:14:59s.  Time for last 1,000,000:    1s.  Last read position: chr17:49,317,383
INFO	2026-06-08 08:55:36	MarkDuplicates	Tracking 531632 as yet unmatched pairs. 104544 records in RAM.
INFO	2026-06-08 08:55:37	MarkDuplicates	Read   502,000,000 records.  Elapsed time: 00:15:01s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,186,389
INFO	2026-06-08 08:55:37	MarkDuplicates	Tracking 532808 as yet unmatched pairs. 105719 records in RAM.
INFO	2026-06-08 08:55:39	MarkDuplicates	Read   503,000,000 records.  Elapsed time: 00:15:03s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,066
INFO	2026-06-08 08:55:39	MarkDuplicates	Tracking 534765 as yet unmatched pairs. 107676 records in RAM.
INFO	2026-06-08 08:55:41	MarkDuplicates	Read   504,000,000 records.  Elapsed time: 00:15:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,968
INFO	2026-06-08 08:55:41	MarkDuplicates	Tracking 537901 as yet unmatched pairs. 110812 records in RAM.
INFO	2026-06-08 08:55:43	MarkDuplicates	Read   505,000,000 records.  Elapsed time: 00:15:06s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,188,752
INFO	2026-06-08 08:55:43	MarkDuplicates	Tracking 525208 as yet unmatched pairs. 98118 records in RAM.
INFO	2026-06-08 08:55:44	MarkDuplicates	Read   506,000,000 records.  Elapsed time: 00:15:08s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,399
INFO	2026-06-08 08:55:44	MarkDuplicates	Tracking 521417 as yet unmatched pairs. 94327 records in RAM.
INFO	2026-06-08 08:55:46	MarkDuplicates	Read   507,000,000 records.  Elapsed time: 00:15:10s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,858
INFO	2026-06-08 08:55:46	MarkDuplicates	Tracking 522221 as yet unmatched pairs. 95127 records in RAM.
INFO	2026-06-08 08:55:48	MarkDuplicates	Read   508,000,000 records.  Elapsed time: 00:15:12s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,330
INFO	2026-06-08 08:55:48	MarkDuplicates	Tracking 529952 as yet unmatched pairs. 102857 records in RAM.
INFO	2026-06-08 08:55:50	MarkDuplicates	Read   509,000,000 records.  Elapsed time: 00:15:14s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,191,427
INFO	2026-06-08 08:55:50	MarkDuplicates	Tracking 515437 as yet unmatched pairs. 88340 records in RAM.
INFO	2026-06-08 08:55:52	MarkDuplicates	Read   510,000,000 records.  Elapsed time: 00:15:15s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,192,656
INFO	2026-06-08 08:55:52	MarkDuplicates	Tracking 507592 as yet unmatched pairs. 80495 records in RAM.
INFO	2026-06-08 08:55:53	MarkDuplicates	Read   511,000,000 records.  Elapsed time: 00:15:17s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,193,962
INFO	2026-06-08 08:55:53	MarkDuplicates	Tracking 506888 as yet unmatched pairs. 79791 records in RAM.
INFO	2026-06-08 08:55:55	MarkDuplicates	Read   512,000,000 records.  Elapsed time: 00:15:18s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,194,408
INFO	2026-06-08 08:55:55	MarkDuplicates	Tracking 504005 as yet unmatched pairs. 76906 records in RAM.
INFO	2026-06-08 08:58:04	MarkDuplicates	Read   513,000,000 records.  Elapsed time: 00:17:28s.  Time for last 1,000,000:  129s.  Last read position: chr17:50,195,231
INFO	2026-06-08 08:58:04	MarkDuplicates	Tracking 493868 as yet unmatched pairs. 66768 records in RAM.
INFO	2026-06-08 08:58:06	MarkDuplicates	Read   514,000,000 records.  Elapsed time: 00:17:30s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,923
INFO	2026-06-08 08:58:06	MarkDuplicates	Tracking 491421 as yet unmatched pairs. 64320 records in RAM.
INFO	2026-06-08 08:58:08	MarkDuplicates	Read   515,000,000 records.  Elapsed time: 00:17:32s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,196,331
INFO	2026-06-08 08:58:08	MarkDuplicates	Tracking 489181 as yet unmatched pairs. 62080 records in RAM.
INFO	2026-06-08 08:58:09	MarkDuplicates	Read   516,000,000 records.  Elapsed time: 00:17:33s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,197,053
INFO	2026-06-08 08:58:09	MarkDuplicates	Tracking 491565 as yet unmatched pairs. 64458 records in RAM.
INFO	2026-06-08 08:58:11	MarkDuplicates	Read   517,000,000 records.  Elapsed time: 00:17:35s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,198,479
INFO	2026-06-08 08:58:11	MarkDuplicates	Tracking 478518 as yet unmatched pairs. 51411 records in RAM.
INFO	2026-06-08 08:58:13	MarkDuplicates	Read   518,000,000 records.  Elapsed time: 00:17:36s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,771
INFO	2026-06-08 08:58:13	MarkDuplicates	Tracking 472549 as yet unmatched pairs. 45442 records in RAM.
INFO	2026-06-08 08:58:14	MarkDuplicates	Read   519,000,000 records.  Elapsed time: 00:17:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:51,168,246
INFO	2026-06-08 08:58:14	MarkDuplicates	Tracking 465261 as yet unmatched pairs. 38153 records in RAM.
INFO	2026-06-08 08:58:16	MarkDuplicates	Read   520,000,000 records.  Elapsed time: 00:17:40s.  Time for last 1,000,000:    1s.  Last read position: chr17:58,999,308
INFO	2026-06-08 08:58:16	MarkDuplicates	Tracking 460641 as yet unmatched pairs. 33529 records in RAM.
INFO	2026-06-08 08:58:18	MarkDuplicates	Read   521,000,000 records.  Elapsed time: 00:17:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:60,076,143
INFO	2026-06-08 08:58:18	MarkDuplicates	Tracking 457479 as yet unmatched pairs. 30366 records in RAM.
INFO	2026-06-08 08:58:19	MarkDuplicates	Read   522,000,000 records.  Elapsed time: 00:17:43s.  Time for last 1,000,000:    1s.  Last read position: chr17:63,834,503
INFO	2026-06-08 08:58:19	MarkDuplicates	Tracking 454441 as yet unmatched pairs. 27324 records in RAM.
INFO	2026-06-08 08:58:21	MarkDuplicates	Read   523,000,000 records.  Elapsed time: 00:17:44s.  Time for last 1,000,000:    1s.  Last read position: chr17:68,042,266
INFO	2026-06-08 08:58:21	MarkDuplicates	Tracking 451085 as yet unmatched pairs. 23967 records in RAM.
INFO	2026-06-08 08:58:22	MarkDuplicates	Read   524,000,000 records.  Elapsed time: 00:17:46s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,521,760
INFO	2026-06-08 08:58:22	MarkDuplicates	Tracking 447668 as yet unmatched pairs. 20545 records in RAM.
INFO	2026-06-08 08:58:24	MarkDuplicates	Read   525,000,000 records.  Elapsed time: 00:17:48s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,878,184
INFO	2026-06-08 08:58:24	MarkDuplicates	Tracking 443648 as yet unmatched pairs. 16521 records in RAM.
INFO	2026-06-08 08:58:25	MarkDuplicates	Read   526,000,000 records.  Elapsed time: 00:17:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:78,170,949
INFO	2026-06-08 08:58:25	MarkDuplicates	Tracking 439822 as yet unmatched pairs. 12693 records in RAM.
INFO	2026-06-08 08:58:27	MarkDuplicates	Read   527,000,000 records.  Elapsed time: 00:17:51s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,346,649
INFO	2026-06-08 08:58:27	MarkDuplicates	Tracking 436434 as yet unmatched pairs. 9302 records in RAM.
INFO	2026-06-08 08:58:29	MarkDuplicates	Read   528,000,000 records.  Elapsed time: 00:17:53s.  Time for last 1,000,000:    2s.  Last read position: chr17:81,845,946
INFO	2026-06-08 08:58:29	MarkDuplicates	Tracking 432297 as yet unmatched pairs. 5161 records in RAM.
INFO	2026-06-08 08:58:31	MarkDuplicates	Read   529,000,000 records.  Elapsed time: 00:17:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:82,458,726
INFO	2026-06-08 08:58:31	MarkDuplicates	Tracking 428087 as yet unmatched pairs. 950 records in RAM.
INFO	2026-06-08 08:58:32	MarkDuplicates	Read   530,000,000 records.  Elapsed time: 00:17:56s.  Time for last 1,000,000:    1s.  Last read position: chr18:11,619,770
INFO	2026-06-08 08:58:32	MarkDuplicates	Tracking 424661 as yet unmatched pairs. 11278 records in RAM.
INFO	2026-06-08 08:58:35	MarkDuplicates	Read   531,000,000 records.  Elapsed time: 00:17:58s.  Time for last 1,000,000:    2s.  Last read position: chr18:26,548,461
INFO	2026-06-08 08:58:35	MarkDuplicates	Tracking 421412 as yet unmatched pairs. 8022 records in RAM.
INFO	2026-06-08 08:58:37	MarkDuplicates	Read   532,000,000 records.  Elapsed time: 00:18:01s.  Time for last 1,000,000:    2s.  Last read position: chr18:49,561,769
INFO	2026-06-08 08:58:37	MarkDuplicates	Tracking 418563 as yet unmatched pairs. 5171 records in RAM.
INFO	2026-06-08 08:58:39	MarkDuplicates	Read   533,000,000 records.  Elapsed time: 00:18:03s.  Time for last 1,000,000:    1s.  Last read position: chr18:66,505,194
INFO	2026-06-08 08:58:39	MarkDuplicates	Tracking 415071 as yet unmatched pairs. 1676 records in RAM.
INFO	2026-06-08 08:58:42	MarkDuplicates	Read   534,000,000 records.  Elapsed time: 00:18:06s.  Time for last 1,000,000:    3s.  Last read position: chr19:618,577
INFO	2026-06-08 08:58:42	MarkDuplicates	Tracking 411419 as yet unmatched pairs. 198795 records in RAM.
INFO	2026-06-08 08:58:44	MarkDuplicates	Read   535,000,000 records.  Elapsed time: 00:18:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:899,609
INFO	2026-06-08 08:58:44	MarkDuplicates	Tracking 407138 as yet unmatched pairs. 194514 records in RAM.
INFO	2026-06-08 08:58:45	MarkDuplicates	Read   536,000,000 records.  Elapsed time: 00:18:09s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,226,527
INFO	2026-06-08 08:58:45	MarkDuplicates	Tracking 403021 as yet unmatched pairs. 190392 records in RAM.
INFO	2026-06-08 08:58:47	MarkDuplicates	Read   537,000,000 records.  Elapsed time: 00:18:11s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,440,160
INFO	2026-06-08 08:58:47	MarkDuplicates	Tracking 400013 as yet unmatched pairs. 187381 records in RAM.
INFO	2026-06-08 08:58:49	MarkDuplicates	Read   538,000,000 records.  Elapsed time: 00:18:12s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,881,299
INFO	2026-06-08 08:58:49	MarkDuplicates	Tracking 394311 as yet unmatched pairs. 181678 records in RAM.
INFO	2026-06-08 08:58:50	MarkDuplicates	Read   539,000,000 records.  Elapsed time: 00:18:14s.  Time for last 1,000,000:    1s.  Last read position: chr19:2,271,463
INFO	2026-06-08 08:58:50	MarkDuplicates	Tracking 389577 as yet unmatched pairs. 176944 records in RAM.
INFO	2026-06-08 08:58:52	MarkDuplicates	Read   540,000,000 records.  Elapsed time: 00:18:15s.  Time for last 1,000,000:    1s.  Last read position: chr19:3,534,408
INFO	2026-06-08 08:58:52	MarkDuplicates	Tracking 385063 as yet unmatched pairs. 172429 records in RAM.
INFO	2026-06-08 08:58:53	MarkDuplicates	Read   541,000,000 records.  Elapsed time: 00:18:17s.  Time for last 1,000,000:    1s.  Last read position: chr19:4,361,764
INFO	2026-06-08 08:58:53	MarkDuplicates	Tracking 380622 as yet unmatched pairs. 167986 records in RAM.
INFO	2026-06-08 08:58:55	MarkDuplicates	Read   542,000,000 records.  Elapsed time: 00:18:19s.  Time for last 1,000,000:    1s.  Last read position: chr19:5,649,305
INFO	2026-06-08 08:58:55	MarkDuplicates	Tracking 376966 as yet unmatched pairs. 164330 records in RAM.
INFO	2026-06-08 08:58:56	MarkDuplicates	Read   543,000,000 records.  Elapsed time: 00:18:20s.  Time for last 1,000,000:    1s.  Last read position: chr19:6,383,441
INFO	2026-06-08 08:58:56	MarkDuplicates	Tracking 373037 as yet unmatched pairs. 160398 records in RAM.
INFO	2026-06-08 08:58:58	MarkDuplicates	Read   544,000,000 records.  Elapsed time: 00:18:21s.  Time for last 1,000,000:    1s.  Last read position: chr19:7,561,247
INFO	2026-06-08 08:58:58	MarkDuplicates	Tracking 369285 as yet unmatched pairs. 156646 records in RAM.
INFO	2026-06-08 08:59:00	MarkDuplicates	Read   545,000,000 records.  Elapsed time: 00:18:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:9,414,218
INFO	2026-06-08 08:59:00	MarkDuplicates	Tracking 365078 as yet unmatched pairs. 152439 records in RAM.
INFO	2026-06-08 08:59:01	MarkDuplicates	Read   546,000,000 records.  Elapsed time: 00:18:25s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,491,849
INFO	2026-06-08 08:59:01	MarkDuplicates	Tracking 361498 as yet unmatched pairs. 148857 records in RAM.
INFO	2026-06-08 08:59:04	MarkDuplicates	Read   547,000,000 records.  Elapsed time: 00:18:27s.  Time for last 1,000,000:    2s.  Last read position: chr19:10,986,974
INFO	2026-06-08 08:59:04	MarkDuplicates	Tracking 358498 as yet unmatched pairs. 145857 records in RAM.
INFO	2026-06-08 08:59:06	MarkDuplicates	Read   548,000,000 records.  Elapsed time: 00:18:30s.  Time for last 1,000,000:    2s.  Last read position: chr19:11,436,088
INFO	2026-06-08 08:59:06	MarkDuplicates	Tracking 354244 as yet unmatched pairs. 141601 records in RAM.
INFO	2026-06-08 08:59:08	MarkDuplicates	Read   549,000,000 records.  Elapsed time: 00:18:32s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,737,548
INFO	2026-06-08 08:59:08	MarkDuplicates	Tracking 350500 as yet unmatched pairs. 137857 records in RAM.
INFO	2026-06-08 08:59:09	MarkDuplicates	Read   550,000,000 records.  Elapsed time: 00:18:33s.  Time for last 1,000,000:    1s.  Last read position: chr19:13,153,340
INFO	2026-06-08 08:59:09	MarkDuplicates	Tracking 346905 as yet unmatched pairs. 134261 records in RAM.
INFO	2026-06-08 08:59:11	MarkDuplicates	Read   551,000,000 records.  Elapsed time: 00:18:34s.  Time for last 1,000,000:    1s.  Last read position: chr19:14,402,646
INFO	2026-06-08 08:59:11	MarkDuplicates	Tracking 342802 as yet unmatched pairs. 130157 records in RAM.
INFO	2026-06-08 08:59:12	MarkDuplicates	Read   552,000,000 records.  Elapsed time: 00:18:36s.  Time for last 1,000,000:    1s.  Last read position: chr19:15,181,605
INFO	2026-06-08 08:59:12	MarkDuplicates	Tracking 339029 as yet unmatched pairs. 126384 records in RAM.
INFO	2026-06-08 08:59:14	MarkDuplicates	Read   553,000,000 records.  Elapsed time: 00:18:38s.  Time for last 1,000,000:    1s.  Last read position: chr19:15,272,822
INFO	2026-06-08 08:59:14	MarkDuplicates	Tracking 336167 as yet unmatched pairs. 123519 records in RAM.
INFO	2026-06-08 08:59:15	MarkDuplicates	Read   554,000,000 records.  Elapsed time: 00:18:39s.  Time for last 1,000,000:    1s.  Last read position: chr19:16,871,280
INFO	2026-06-08 08:59:15	MarkDuplicates	Tracking 331523 as yet unmatched pairs. 118870 records in RAM.
INFO	2026-06-08 08:59:17	MarkDuplicates	Read   555,000,000 records.  Elapsed time: 00:18:40s.  Time for last 1,000,000:    1s.  Last read position: chr19:17,801,221
INFO	2026-06-08 08:59:17	MarkDuplicates	Tracking 327276 as yet unmatched pairs. 114619 records in RAM.
INFO	2026-06-08 08:59:18	MarkDuplicates	Read   556,000,000 records.  Elapsed time: 00:18:42s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,281,115
INFO	2026-06-08 08:59:18	MarkDuplicates	Tracking 324203 as yet unmatched pairs. 111546 records in RAM.
INFO	2026-06-08 08:59:20	MarkDuplicates	Read   557,000,000 records.  Elapsed time: 00:18:44s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,789,942
INFO	2026-06-08 08:59:20	MarkDuplicates	Tracking 319150 as yet unmatched pairs. 106493 records in RAM.
INFO	2026-06-08 08:59:21	MarkDuplicates	Read   558,000,000 records.  Elapsed time: 00:18:45s.  Time for last 1,000,000:    1s.  Last read position: chr19:21,142,159
INFO	2026-06-08 08:59:21	MarkDuplicates	Tracking 315326 as yet unmatched pairs. 102668 records in RAM.
INFO	2026-06-08 08:59:23	MarkDuplicates	Read   559,000,000 records.  Elapsed time: 00:18:46s.  Time for last 1,000,000:    1s.  Last read position: chr19:34,396,328
INFO	2026-06-08 08:59:23	MarkDuplicates	Tracking 312481 as yet unmatched pairs. 99820 records in RAM.
INFO	2026-06-08 08:59:24	MarkDuplicates	Read   560,000,000 records.  Elapsed time: 00:18:48s.  Time for last 1,000,000:    1s.  Last read position: chr19:35,270,742
INFO	2026-06-08 08:59:24	MarkDuplicates	Tracking 307698 as yet unmatched pairs. 95037 records in RAM.
INFO	2026-06-08 08:59:26	MarkDuplicates	Read   561,000,000 records.  Elapsed time: 00:18:50s.  Time for last 1,000,000:    1s.  Last read position: chr19:36,024,596
INFO	2026-06-08 08:59:26	MarkDuplicates	Tracking 303776 as yet unmatched pairs. 91115 records in RAM.
INFO	2026-06-08 08:59:28	MarkDuplicates	Read   562,000,000 records.  Elapsed time: 00:18:52s.  Time for last 1,000,000:    1s.  Last read position: chr19:38,374,924
INFO	2026-06-08 08:59:28	MarkDuplicates	Tracking 300476 as yet unmatched pairs. 87815 records in RAM.
INFO	2026-06-08 08:59:30	MarkDuplicates	Read   563,000,000 records.  Elapsed time: 00:18:54s.  Time for last 1,000,000:    2s.  Last read position: chr19:38,845,950
INFO	2026-06-08 08:59:30	MarkDuplicates	Tracking 297034 as yet unmatched pairs. 84372 records in RAM.
INFO	2026-06-08 08:59:32	MarkDuplicates	Read   564,000,000 records.  Elapsed time: 00:18:56s.  Time for last 1,000,000:    1s.  Last read position: chr19:39,433,268
INFO	2026-06-08 08:59:32	MarkDuplicates	Tracking 293372 as yet unmatched pairs. 80710 records in RAM.
INFO	2026-06-08 08:59:34	MarkDuplicates	Read   565,000,000 records.  Elapsed time: 00:18:57s.  Time for last 1,000,000:    1s.  Last read position: chr19:39,943,377
INFO	2026-06-08 08:59:34	MarkDuplicates	Tracking 290296 as yet unmatched pairs. 77634 records in RAM.
INFO	2026-06-08 08:59:35	MarkDuplicates	Read   566,000,000 records.  Elapsed time: 00:18:59s.  Time for last 1,000,000:    1s.  Last read position: chr19:40,612,085
INFO	2026-06-08 08:59:35	MarkDuplicates	Tracking 286964 as yet unmatched pairs. 74302 records in RAM.
INFO	2026-06-08 08:59:37	MarkDuplicates	Read   567,000,000 records.  Elapsed time: 00:19:00s.  Time for last 1,000,000:    1s.  Last read position: chr19:41,341,903
INFO	2026-06-08 08:59:37	MarkDuplicates	Tracking 282276 as yet unmatched pairs. 69613 records in RAM.
INFO	2026-06-08 08:59:38	MarkDuplicates	Read   568,000,000 records.  Elapsed time: 00:19:02s.  Time for last 1,000,000:    1s.  Last read position: chr19:41,717,630
INFO	2026-06-08 08:59:38	MarkDuplicates	Tracking 282401 as yet unmatched pairs. 69738 records in RAM.
INFO	2026-06-08 08:59:40	MarkDuplicates	Read   569,000,000 records.  Elapsed time: 00:19:04s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,079,681
INFO	2026-06-08 08:59:40	MarkDuplicates	Tracking 276033 as yet unmatched pairs. 63369 records in RAM.
INFO	2026-06-08 08:59:41	MarkDuplicates	Read   570,000,000 records.  Elapsed time: 00:19:05s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,290,760
INFO	2026-06-08 08:59:41	MarkDuplicates	Tracking 272333 as yet unmatched pairs. 59669 records in RAM.
INFO	2026-06-08 08:59:43	MarkDuplicates	Read   571,000,000 records.  Elapsed time: 00:19:06s.  Time for last 1,000,000:    1s.  Last read position: chr19:43,734,397
INFO	2026-06-08 08:59:43	MarkDuplicates	Tracking 268186 as yet unmatched pairs. 55516 records in RAM.
INFO	2026-06-08 08:59:44	MarkDuplicates	Read   572,000,000 records.  Elapsed time: 00:19:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,382,509
INFO	2026-06-08 08:59:44	MarkDuplicates	Tracking 264143 as yet unmatched pairs. 51473 records in RAM.
INFO	2026-06-08 08:59:46	MarkDuplicates	Read   573,000,000 records.  Elapsed time: 00:19:10s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,842,329
INFO	2026-06-08 08:59:46	MarkDuplicates	Tracking 259943 as yet unmatched pairs. 47270 records in RAM.
INFO	2026-06-08 08:59:47	MarkDuplicates	Read   574,000,000 records.  Elapsed time: 00:19:11s.  Time for last 1,000,000:    1s.  Last read position: chr19:47,226,599
INFO	2026-06-08 08:59:47	MarkDuplicates	Tracking 255894 as yet unmatched pairs. 43220 records in RAM.
INFO	2026-06-08 08:59:49	MarkDuplicates	Read   575,000,000 records.  Elapsed time: 00:19:12s.  Time for last 1,000,000:    1s.  Last read position: chr19:48,451,197
INFO	2026-06-08 08:59:49	MarkDuplicates	Tracking 251815 as yet unmatched pairs. 39138 records in RAM.
INFO	2026-06-08 08:59:50	MarkDuplicates	Read   576,000,000 records.  Elapsed time: 00:19:14s.  Time for last 1,000,000:    1s.  Last read position: chr19:48,919,057
INFO	2026-06-08 08:59:50	MarkDuplicates	Tracking 248310 as yet unmatched pairs. 35632 records in RAM.
INFO	2026-06-08 08:59:52	MarkDuplicates	Read   577,000,000 records.  Elapsed time: 00:19:16s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,490,826
INFO	2026-06-08 08:59:52	MarkDuplicates	Tracking 246198 as yet unmatched pairs. 33518 records in RAM.
INFO	2026-06-08 08:59:53	MarkDuplicates	Read   578,000,000 records.  Elapsed time: 00:19:17s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,652,706
INFO	2026-06-08 08:59:53	MarkDuplicates	Tracking 240845 as yet unmatched pairs. 28164 records in RAM.
INFO	2026-06-08 08:59:56	MarkDuplicates	Read   579,000,000 records.  Elapsed time: 00:19:19s.  Time for last 1,000,000:    2s.  Last read position: chr19:50,210,428
INFO	2026-06-08 08:59:56	MarkDuplicates	Tracking 237493 as yet unmatched pairs. 24812 records in RAM.
INFO	2026-06-08 08:59:58	MarkDuplicates	Read   580,000,000 records.  Elapsed time: 00:19:21s.  Time for last 1,000,000:    2s.  Last read position: chr19:50,723,941
INFO	2026-06-08 08:59:58	MarkDuplicates	Tracking 232406 as yet unmatched pairs. 19725 records in RAM.
INFO	2026-06-08 08:59:59	MarkDuplicates	Read   581,000,000 records.  Elapsed time: 00:19:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,160,981
INFO	2026-06-08 08:59:59	MarkDuplicates	Tracking 229272 as yet unmatched pairs. 16588 records in RAM.
INFO	2026-06-08 09:00:01	MarkDuplicates	Read   582,000,000 records.  Elapsed time: 00:19:24s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,465,135
INFO	2026-06-08 09:00:01	MarkDuplicates	Tracking 226009 as yet unmatched pairs. 13323 records in RAM.
INFO	2026-06-08 09:00:02	MarkDuplicates	Read   583,000,000 records.  Elapsed time: 00:19:26s.  Time for last 1,000,000:    1s.  Last read position: chr19:55,406,910
INFO	2026-06-08 09:00:02	MarkDuplicates	Tracking 221728 as yet unmatched pairs. 9042 records in RAM.
INFO	2026-06-08 09:00:04	MarkDuplicates	Read   584,000,000 records.  Elapsed time: 00:19:27s.  Time for last 1,000,000:    1s.  Last read position: chr19:56,307,036
INFO	2026-06-08 09:00:04	MarkDuplicates	Tracking 217285 as yet unmatched pairs. 4598 records in RAM.
INFO	2026-06-08 09:00:05	MarkDuplicates	Read   585,000,000 records.  Elapsed time: 00:19:29s.  Time for last 1,000,000:    1s.  Last read position: chr19:58,545,806
INFO	2026-06-08 09:00:05	MarkDuplicates	Tracking 214466 as yet unmatched pairs. 1779 records in RAM.
INFO	2026-06-08 09:00:07	MarkDuplicates	Read   586,000,000 records.  Elapsed time: 00:19:31s.  Time for last 1,000,000:    2s.  Last read position: chr20:1,369,989
INFO	2026-06-08 09:00:07	MarkDuplicates	Tracking 211157 as yet unmatched pairs. 57592 records in RAM.
INFO	2026-06-08 09:00:09	MarkDuplicates	Read   587,000,000 records.  Elapsed time: 00:19:32s.  Time for last 1,000,000:    1s.  Last read position: chr20:3,786,372
INFO	2026-06-08 09:00:09	MarkDuplicates	Tracking 206378 as yet unmatched pairs. 52813 records in RAM.
INFO	2026-06-08 09:00:10	MarkDuplicates	Read   588,000,000 records.  Elapsed time: 00:19:34s.  Time for last 1,000,000:    1s.  Last read position: chr20:16,462,912
INFO	2026-06-08 09:00:10	MarkDuplicates	Tracking 202936 as yet unmatched pairs. 49368 records in RAM.
INFO	2026-06-08 09:00:11	MarkDuplicates	Read   589,000,000 records.  Elapsed time: 00:19:35s.  Time for last 1,000,000:    1s.  Last read position: chr20:20,039,640
INFO	2026-06-08 09:00:11	MarkDuplicates	Tracking 199809 as yet unmatched pairs. 46240 records in RAM.
INFO	2026-06-08 09:00:13	MarkDuplicates	Read   590,000,000 records.  Elapsed time: 00:19:37s.  Time for last 1,000,000:    1s.  Last read position: chr20:31,538,205
INFO	2026-06-08 09:00:13	MarkDuplicates	Tracking 196529 as yet unmatched pairs. 42960 records in RAM.
INFO	2026-06-08 09:00:15	MarkDuplicates	Read   591,000,000 records.  Elapsed time: 00:19:38s.  Time for last 1,000,000:    1s.  Last read position: chr20:34,073,846
INFO	2026-06-08 09:00:15	MarkDuplicates	Tracking 192675 as yet unmatched pairs. 39105 records in RAM.
INFO	2026-06-08 09:00:16	MarkDuplicates	Read   592,000,000 records.  Elapsed time: 00:19:40s.  Time for last 1,000,000:    1s.  Last read position: chr20:35,478,041
INFO	2026-06-08 09:00:16	MarkDuplicates	Tracking 189159 as yet unmatched pairs. 35589 records in RAM.
INFO	2026-06-08 09:00:17	MarkDuplicates	Read   593,000,000 records.  Elapsed time: 00:19:41s.  Time for last 1,000,000:    1s.  Last read position: chr20:36,549,147
INFO	2026-06-08 09:00:17	MarkDuplicates	Tracking 186206 as yet unmatched pairs. 32636 records in RAM.
INFO	2026-06-08 09:00:19	MarkDuplicates	Read   594,000,000 records.  Elapsed time: 00:19:43s.  Time for last 1,000,000:    1s.  Last read position: chr20:41,166,201
INFO	2026-06-08 09:00:19	MarkDuplicates	Tracking 182663 as yet unmatched pairs. 29092 records in RAM.
INFO	2026-06-08 09:00:20	MarkDuplicates	Read   595,000,000 records.  Elapsed time: 00:19:44s.  Time for last 1,000,000:    1s.  Last read position: chr20:45,333,032
INFO	2026-06-08 09:00:20	MarkDuplicates	Tracking 180024 as yet unmatched pairs. 26451 records in RAM.
INFO	2026-06-08 09:00:22	MarkDuplicates	Read   596,000,000 records.  Elapsed time: 00:19:46s.  Time for last 1,000,000:    1s.  Last read position: chr20:47,636,131
INFO	2026-06-08 09:00:22	MarkDuplicates	Tracking 175738 as yet unmatched pairs. 22164 records in RAM.
INFO	2026-06-08 09:00:24	MarkDuplicates	Read   597,000,000 records.  Elapsed time: 00:19:48s.  Time for last 1,000,000:    2s.  Last read position: chr20:51,601,137
INFO	2026-06-08 09:00:24	MarkDuplicates	Tracking 172575 as yet unmatched pairs. 18999 records in RAM.
INFO	2026-06-08 09:00:26	MarkDuplicates	Read   598,000,000 records.  Elapsed time: 00:19:49s.  Time for last 1,000,000:    1s.  Last read position: chr20:58,898,941
INFO	2026-06-08 09:00:26	MarkDuplicates	Tracking 168715 as yet unmatched pairs. 15133 records in RAM.
INFO	2026-06-08 09:00:27	MarkDuplicates	Read   599,000,000 records.  Elapsed time: 00:19:51s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,322,717
INFO	2026-06-08 09:00:27	MarkDuplicates	Tracking 164407 as yet unmatched pairs. 10825 records in RAM.
INFO	2026-06-08 09:00:29	MarkDuplicates	Read   600,000,000 records.  Elapsed time: 00:19:52s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,905,948
INFO	2026-06-08 09:00:29	MarkDuplicates	Tracking 160600 as yet unmatched pairs. 7018 records in RAM.
INFO	2026-06-08 09:00:30	MarkDuplicates	Read   601,000,000 records.  Elapsed time: 00:19:54s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,694,929
INFO	2026-06-08 09:00:30	MarkDuplicates	Tracking 156092 as yet unmatched pairs. 2507 records in RAM.
INFO	2026-06-08 09:00:32	MarkDuplicates	Read   602,000,000 records.  Elapsed time: 00:19:55s.  Time for last 1,000,000:    1s.  Last read position: chr21:6,492,154
INFO	2026-06-08 09:00:32	MarkDuplicates	Tracking 152792 as yet unmatched pairs. 28387 records in RAM.
INFO	2026-06-08 09:00:33	MarkDuplicates	Read   603,000,000 records.  Elapsed time: 00:19:57s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,258,919
INFO	2026-06-08 09:00:33	MarkDuplicates	Tracking 151094 as yet unmatched pairs. 26686 records in RAM.
INFO	2026-06-08 09:00:34	MarkDuplicates	Read   604,000,000 records.  Elapsed time: 00:19:58s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,913
INFO	2026-06-08 09:00:34	MarkDuplicates	Tracking 150471 as yet unmatched pairs. 26063 records in RAM.
INFO	2026-06-08 09:00:35	MarkDuplicates	Read   605,000,000 records.  Elapsed time: 00:19:59s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,443,300
INFO	2026-06-08 09:00:35	MarkDuplicates	Tracking 148540 as yet unmatched pairs. 24128 records in RAM.
INFO	2026-06-08 09:00:36	MarkDuplicates	Read   606,000,000 records.  Elapsed time: 00:20:00s.  Time for last 1,000,000:    1s.  Last read position: chr21:26,838,038
INFO	2026-06-08 09:00:36	MarkDuplicates	Tracking 146040 as yet unmatched pairs. 21628 records in RAM.
INFO	2026-06-08 09:00:38	MarkDuplicates	Read   607,000,000 records.  Elapsed time: 00:20:01s.  Time for last 1,000,000:    1s.  Last read position: chr21:33,567,101
INFO	2026-06-08 09:00:38	MarkDuplicates	Tracking 142664 as yet unmatched pairs. 18248 records in RAM.
INFO	2026-06-08 09:00:39	MarkDuplicates	Read   608,000,000 records.  Elapsed time: 00:20:03s.  Time for last 1,000,000:    1s.  Last read position: chr21:38,821,652
INFO	2026-06-08 09:00:39	MarkDuplicates	Tracking 139297 as yet unmatched pairs. 14875 records in RAM.
INFO	2026-06-08 09:00:40	MarkDuplicates	Read   609,000,000 records.  Elapsed time: 00:20:04s.  Time for last 1,000,000:    1s.  Last read position: chr21:43,425,431
INFO	2026-06-08 09:00:40	MarkDuplicates	Tracking 135664 as yet unmatched pairs. 11242 records in RAM.
INFO	2026-06-08 09:00:42	MarkDuplicates	Read   610,000,000 records.  Elapsed time: 00:20:06s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,456,003
INFO	2026-06-08 09:00:42	MarkDuplicates	Tracking 132542 as yet unmatched pairs. 8118 records in RAM.
INFO	2026-06-08 09:00:43	MarkDuplicates	Read   611,000,000 records.  Elapsed time: 00:20:07s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,116,036
INFO	2026-06-08 09:00:43	MarkDuplicates	Tracking 128167 as yet unmatched pairs. 3739 records in RAM.
INFO	2026-06-08 09:00:45	MarkDuplicates	Read   612,000,000 records.  Elapsed time: 00:20:09s.  Time for last 1,000,000:    1s.  Last read position: chr22:17,207,155
INFO	2026-06-08 09:00:45	MarkDuplicates	Tracking 124157 as yet unmatched pairs. 58691 records in RAM.
INFO	2026-06-08 09:00:47	MarkDuplicates	Read   613,000,000 records.  Elapsed time: 00:20:10s.  Time for last 1,000,000:    1s.  Last read position: chr22:20,119,012
INFO	2026-06-08 09:00:47	MarkDuplicates	Tracking 120617 as yet unmatched pairs. 55151 records in RAM.
INFO	2026-06-08 09:00:48	MarkDuplicates	Read   614,000,000 records.  Elapsed time: 00:20:12s.  Time for last 1,000,000:    1s.  Last read position: chr22:23,181,196
INFO	2026-06-08 09:00:48	MarkDuplicates	Tracking 116912 as yet unmatched pairs. 51446 records in RAM.
INFO	2026-06-08 09:00:50	MarkDuplicates	Read   615,000,000 records.  Elapsed time: 00:20:14s.  Time for last 1,000,000:    1s.  Last read position: chr22:23,894,898
INFO	2026-06-08 09:00:50	MarkDuplicates	Tracking 112534 as yet unmatched pairs. 47068 records in RAM.
INFO	2026-06-08 09:00:52	MarkDuplicates	Read   616,000,000 records.  Elapsed time: 00:20:16s.  Time for last 1,000,000:    1s.  Last read position: chr22:28,687,810
INFO	2026-06-08 09:00:52	MarkDuplicates	Tracking 108713 as yet unmatched pairs. 43246 records in RAM.
INFO	2026-06-08 09:00:53	MarkDuplicates	Read   617,000,000 records.  Elapsed time: 00:20:17s.  Time for last 1,000,000:    1s.  Last read position: chr22:29,310,709
INFO	2026-06-08 09:00:53	MarkDuplicates	Tracking 105463 as yet unmatched pairs. 39996 records in RAM.
INFO	2026-06-08 09:00:55	MarkDuplicates	Read   618,000,000 records.  Elapsed time: 00:20:19s.  Time for last 1,000,000:    1s.  Last read position: chr22:31,096,851
INFO	2026-06-08 09:00:55	MarkDuplicates	Tracking 102612 as yet unmatched pairs. 37145 records in RAM.
INFO	2026-06-08 09:00:57	MarkDuplicates	Read   619,000,000 records.  Elapsed time: 00:20:20s.  Time for last 1,000,000:    1s.  Last read position: chr22:36,265,553
INFO	2026-06-08 09:00:57	MarkDuplicates	Tracking 98531 as yet unmatched pairs. 33063 records in RAM.
INFO	2026-06-08 09:00:58	MarkDuplicates	Read   620,000,000 records.  Elapsed time: 00:20:22s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,011,257
INFO	2026-06-08 09:00:58	MarkDuplicates	Tracking 94522 as yet unmatched pairs. 29053 records in RAM.
INFO	2026-06-08 09:01:00	MarkDuplicates	Read   621,000,000 records.  Elapsed time: 00:20:23s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,947,378
INFO	2026-06-08 09:01:00	MarkDuplicates	Tracking 90724 as yet unmatched pairs. 25255 records in RAM.
INFO	2026-06-08 09:01:01	MarkDuplicates	Read   622,000,000 records.  Elapsed time: 00:20:25s.  Time for last 1,000,000:    1s.  Last read position: chr22:39,235,832
INFO	2026-06-08 09:01:01	MarkDuplicates	Tracking 86944 as yet unmatched pairs. 21475 records in RAM.
INFO	2026-06-08 09:01:03	MarkDuplicates	Read   623,000,000 records.  Elapsed time: 00:20:26s.  Time for last 1,000,000:    1s.  Last read position: chr22:41,151,905
INFO	2026-06-08 09:01:03	MarkDuplicates	Tracking 83791 as yet unmatched pairs. 18321 records in RAM.
INFO	2026-06-08 09:01:04	MarkDuplicates	Read   624,000,000 records.  Elapsed time: 00:20:28s.  Time for last 1,000,000:    1s.  Last read position: chr22:42,065,860
INFO	2026-06-08 09:01:04	MarkDuplicates	Tracking 80134 as yet unmatched pairs. 14664 records in RAM.
INFO	2026-06-08 09:01:06	MarkDuplicates	Read   625,000,000 records.  Elapsed time: 00:20:29s.  Time for last 1,000,000:    1s.  Last read position: chr22:45,518,777
INFO	2026-06-08 09:01:06	MarkDuplicates	Tracking 76465 as yet unmatched pairs. 10995 records in RAM.
INFO	2026-06-08 09:01:07	MarkDuplicates	Read   626,000,000 records.  Elapsed time: 00:20:31s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,221,092
INFO	2026-06-08 09:01:07	MarkDuplicates	Tracking 72309 as yet unmatched pairs. 6839 records in RAM.
INFO	2026-06-08 09:01:09	MarkDuplicates	Read   627,000,000 records.  Elapsed time: 00:20:32s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,465,085
INFO	2026-06-08 09:01:09	MarkDuplicates	Tracking 68285 as yet unmatched pairs. 2815 records in RAM.
INFO	2026-06-08 09:01:11	MarkDuplicates	Read   628,000,000 records.  Elapsed time: 00:20:34s.  Time for last 1,000,000:    1s.  Last read position: chrX:2,740,814
INFO	2026-06-08 09:01:11	MarkDuplicates	Tracking 63941 as yet unmatched pairs. 47250 records in RAM.
INFO	2026-06-08 09:01:12	MarkDuplicates	Read   629,000,000 records.  Elapsed time: 00:20:36s.  Time for last 1,000,000:    1s.  Last read position: chrX:21,845,170
INFO	2026-06-08 09:01:12	MarkDuplicates	Tracking 60536 as yet unmatched pairs. 43831 records in RAM.
INFO	2026-06-08 09:01:14	MarkDuplicates	Read   630,000,000 records.  Elapsed time: 00:20:37s.  Time for last 1,000,000:    1s.  Last read position: chrX:40,697,105
INFO	2026-06-08 09:01:14	MarkDuplicates	Tracking 57718 as yet unmatched pairs. 41011 records in RAM.
INFO	2026-06-08 09:01:15	MarkDuplicates	Read   631,000,000 records.  Elapsed time: 00:20:39s.  Time for last 1,000,000:    1s.  Last read position: chrX:47,586,564
INFO	2026-06-08 09:01:15	MarkDuplicates	Tracking 55208 as yet unmatched pairs. 38499 records in RAM.
INFO	2026-06-08 09:01:17	MarkDuplicates	Read   632,000,000 records.  Elapsed time: 00:20:40s.  Time for last 1,000,000:    1s.  Last read position: chrX:49,285,853
INFO	2026-06-08 09:01:17	MarkDuplicates	Tracking 51004 as yet unmatched pairs. 34295 records in RAM.
INFO	2026-06-08 09:01:19	MarkDuplicates	Read   633,000,000 records.  Elapsed time: 00:20:42s.  Time for last 1,000,000:    1s.  Last read position: chrX:53,647,522
INFO	2026-06-08 09:01:19	MarkDuplicates	Tracking 48115 as yet unmatched pairs. 31406 records in RAM.
INFO	2026-06-08 09:01:20	MarkDuplicates	Read   634,000,000 records.  Elapsed time: 00:20:44s.  Time for last 1,000,000:    1s.  Last read position: chrX:71,124,767
INFO	2026-06-08 09:01:20	MarkDuplicates	Tracking 44768 as yet unmatched pairs. 28056 records in RAM.
INFO	2026-06-08 09:01:22	MarkDuplicates	Read   635,000,000 records.  Elapsed time: 00:20:45s.  Time for last 1,000,000:    1s.  Last read position: chrX:77,600,434
INFO	2026-06-08 09:01:22	MarkDuplicates	Tracking 41963 as yet unmatched pairs. 25251 records in RAM.
INFO	2026-06-08 09:01:23	MarkDuplicates	Read   636,000,000 records.  Elapsed time: 00:20:47s.  Time for last 1,000,000:    1s.  Last read position: chrX:102,654,372
INFO	2026-06-08 09:01:23	MarkDuplicates	Tracking 39160 as yet unmatched pairs. 22447 records in RAM.
INFO	2026-06-08 09:01:24	MarkDuplicates	Read   637,000,000 records.  Elapsed time: 00:20:48s.  Time for last 1,000,000:    1s.  Last read position: chrX:123,885,803
INFO	2026-06-08 09:01:24	MarkDuplicates	Tracking 36218 as yet unmatched pairs. 19505 records in RAM.
INFO	2026-06-08 09:01:26	MarkDuplicates	Read   638,000,000 records.  Elapsed time: 00:20:49s.  Time for last 1,000,000:    1s.  Last read position: chrX:149,933,709
INFO	2026-06-08 09:01:26	MarkDuplicates	Tracking 33328 as yet unmatched pairs. 16612 records in RAM.
INFO	2026-06-08 09:01:27	MarkDuplicates	Read   639,000,000 records.  Elapsed time: 00:20:51s.  Time for last 1,000,000:    1s.  Last read position: chrX:153,953,673
INFO	2026-06-08 09:01:27	MarkDuplicates	Tracking 29360 as yet unmatched pairs. 12644 records in RAM.
INFO	2026-06-08 09:01:29	MarkDuplicates	Read   640,000,000 records.  Elapsed time: 00:20:53s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,353,914
INFO	2026-06-08 09:01:29	MarkDuplicates	Tracking 26153 as yet unmatched pairs. 9437 records in RAM.
INFO	2026-06-08 09:01:30	MarkDuplicates	Read   641,000,000 records.  Elapsed time: 00:20:54s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,364,820
INFO	2026-06-08 09:01:30	MarkDuplicates	Tracking 22718 as yet unmatched pairs. 6002 records in RAM.
INFO	2026-06-08 09:01:32	MarkDuplicates	Read   642,000,000 records.  Elapsed time: 00:20:55s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,468,198
INFO	2026-06-08 09:01:32	MarkDuplicates	Tracking 18181 as yet unmatched pairs. 1465 records in RAM.
INFO	2026-06-08 09:01:33	MarkDuplicates	Read   643,000,000 records.  Elapsed time: 00:20:57s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:114,137
INFO	2026-06-08 09:01:33	MarkDuplicates	Tracking 15482 as yet unmatched pairs. 3571 records in RAM.
INFO	2026-06-08 09:01:34	MarkDuplicates	Read   644,000,000 records.  Elapsed time: 00:20:58s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:116,769
INFO	2026-06-08 09:01:34	MarkDuplicates	Tracking 12152 as yet unmatched pairs. 241 records in RAM.
INFO	2026-06-08 09:01:35	MarkDuplicates	Read   645,000,000 records.  Elapsed time: 00:20:59s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:159,528
INFO	2026-06-08 09:01:35	MarkDuplicates	Tracking 11922 as yet unmatched pairs. 11 records in RAM.
INFO	2026-06-08 09:01:37	MarkDuplicates	Read   646,000,000 records.  Elapsed time: 00:21:00s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:131,292
INFO	2026-06-08 09:01:37	MarkDuplicates	Tracking 2527 as yet unmatched pairs. 2323 records in RAM.
INFO	2026-06-08 09:01:38	MarkDuplicates	Read   647,000,000 records.  Elapsed time: 00:21:01s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:176,129
INFO	2026-06-08 09:01:38	MarkDuplicates	Tracking 258 as yet unmatched pairs. 54 records in RAM.
INFO	2026-06-08 09:01:38	MarkDuplicates	Read 647673418 records. 0 pairs never matched.
INFO	2026-06-08 09:02:23	MarkDuplicates	After buildSortedReadEndLists freeMemory: 204141952; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:02:23	MarkDuplicates	Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO	2026-06-08 09:02:25	MarkDuplicates	Traversing read pair information and detecting duplicates.
WARNING	2026-06-08 09:02:25	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 09:02:49	OpticalDuplicateFinder	Large duplicate set. size = 2567
INFO	2026-06-08 09:02:49	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:23,078
INFO	2026-06-08 09:02:49	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,276
INFO	2026-06-08 09:03:16	OpticalDuplicateFinder	Large duplicate set. size = 1779
INFO	2026-06-08 09:03:16	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-16,934
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1708
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,398
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1308
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,435
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1385
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,824
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1046
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,927
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1130
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-32,103
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1156
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:29,986
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1132
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-28,738
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1920
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:25,019
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1127
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,103
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	Large duplicate set. size = 1087
INFO	2026-06-08 09:03:22	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,047
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1088
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,466
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1152
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,030
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1036
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,330
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1245
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-30,291
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1280
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-17,687
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1077
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,844
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1214
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,435
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1622
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:32,405
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1071
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,618
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1284
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:28,846
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1282
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:25,448
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1176
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-13,407
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1003
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-13,739
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1526
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,225
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1926
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:12,747
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1252
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,011
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1309
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,189
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1203
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-28,447
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1310
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:29,744
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1507
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,673
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1113
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,534
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1043
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,003
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1423
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-17,040
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	Large duplicate set. size = 1114
INFO	2026-06-08 09:03:23	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,547
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1232
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,410
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1032
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,433
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1118
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,167
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1010
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,725
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1112
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,641
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1579
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,523
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1392
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,990
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1062
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:7,666
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1076
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:8,362
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1054
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,932
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1634
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,638
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1372
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,927
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1024
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:30,836
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1020
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:2,934
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1166
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,961
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1037
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:20,699
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1269
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,497
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1565
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-26,497
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1247
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,633
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1468
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-14,062
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1379
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,586
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1024
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:6,857
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1317
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:10,376
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1163
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,654
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	Large duplicate set. size = 1012
INFO	2026-06-08 09:03:24	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:32,025
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1117
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,492
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1056
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:3,160
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1853
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:22,762
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1097
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:1,170
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 3064
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:1,817
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:25,553
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         3,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,751
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1023
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-16,425
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 4072
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-15,187
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,806
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         3,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,144
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         4,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,175
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1160
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:26,686
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1087
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,573
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1129
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,302
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1039
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,775
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1011
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,565
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1289
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-27,824
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 2291
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,645
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:31,119
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 2042
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,288
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:17,924
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1508
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:12,326
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1628
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,768
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1041
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-29,992
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1535
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:20,060
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1974
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:24,566
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1302
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-28,989
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1397
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:16,015
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1005
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,062
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1777
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:20,934
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1056
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-20,688
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1051
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,100
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1111
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,923
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1424
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:4,641
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 1556
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,615
INFO	2026-06-08 09:03:25	OpticalDuplicateFinder	Large duplicate set. size = 2783
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-19,442
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         2,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:31,807
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1150
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-29,280
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1381
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:11,258
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1542
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:19,089
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1614
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:18,280
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1437
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-15,009
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1003
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:15,651
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1314
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-18,140
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1481
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:5,441
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1442
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-31,699
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1200
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-24,402
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1013
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,858
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1030
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:21,476
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1007
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:14,090
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1104
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-22,088
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	Large duplicate set. size = 1578
INFO	2026-06-08 09:03:26	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:-16,870
INFO	2026-06-08 09:03:54	OpticalDuplicateFinder	Large duplicate set. size = 1147
INFO	2026-06-08 09:03:54	OpticalDuplicateFinder	compared         1,000 ReadEnds to others.  Elapsed time: 00:00:00s.  Time for last 1,000:    0s.  Last read position: 0:13,904
INFO	2026-06-08 09:03:54	MarkDuplicates	Traversing fragment information and detecting duplicates.
WARNING	2026-06-08 09:03:54	SortingCollection	There is not enough memory per file for buffering. Reading will be unbuffered.
INFO	2026-06-08 09:04:59	MarkDuplicates	Sorting list of duplicate records.
INFO	2026-06-08 09:05:02	MarkDuplicates	After generateDuplicateIndexes freeMemory: 203914408; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:05:02	MarkDuplicates	Marking 325262443 records as duplicates.
INFO	2026-06-08 09:05:02	MarkDuplicates	Found 6920721 optical duplicate clusters.
INFO	2026-06-08 09:05:02	MarkDuplicates	Reads are assumed to be ordered by: coordinate
INFO	2026-06-08 09:05:21	MarkDuplicates	Written    10,000,000 records.  Elapsed time: 00:00:19s.  Time for last 10,000,000:   19s.  Last read position: chr1:21,828,363
INFO	2026-06-08 09:05:36	MarkDuplicates	Written    20,000,000 records.  Elapsed time: 00:00:33s.  Time for last 10,000,000:   14s.  Last read position: chr1:41,513,084
INFO	2026-06-08 09:05:50	MarkDuplicates	Written    30,000,000 records.  Elapsed time: 00:00:48s.  Time for last 10,000,000:   14s.  Last read position: chr1:116,570,919
INFO	2026-06-08 09:06:05	MarkDuplicates	Written    40,000,000 records.  Elapsed time: 00:01:03s.  Time for last 10,000,000:   15s.  Last read position: chr1:156,134,884
INFO	2026-06-08 09:06:20	MarkDuplicates	Written    50,000,000 records.  Elapsed time: 00:01:17s.  Time for last 10,000,000:   14s.  Last read position: chr1:207,767,780
INFO	2026-06-08 09:06:35	MarkDuplicates	Written    60,000,000 records.  Elapsed time: 00:01:32s.  Time for last 10,000,000:   14s.  Last read position: chr2:32,464,529
INFO	2026-06-08 09:06:49	MarkDuplicates	Written    70,000,000 records.  Elapsed time: 00:01:46s.  Time for last 10,000,000:   14s.  Last read position: chr2:54,624,931
INFO	2026-06-08 09:07:03	MarkDuplicates	Written    80,000,000 records.  Elapsed time: 00:02:00s.  Time for last 10,000,000:   14s.  Last read position: chr2:119,247,982
INFO	2026-06-08 09:07:18	MarkDuplicates	Written    90,000,000 records.  Elapsed time: 00:02:15s.  Time for last 10,000,000:   14s.  Last read position: chr2:215,367,992
INFO	2026-06-08 09:07:32	MarkDuplicates	Written   100,000,000 records.  Elapsed time: 00:02:29s.  Time for last 10,000,000:   14s.  Last read position: chr2:240,606,551
INFO	2026-06-08 09:07:47	MarkDuplicates	Written   110,000,000 records.  Elapsed time: 00:02:44s.  Time for last 10,000,000:   15s.  Last read position: chr3:49,022,489
INFO	2026-06-08 09:08:01	MarkDuplicates	Written   120,000,000 records.  Elapsed time: 00:02:58s.  Time for last 10,000,000:   14s.  Last read position: chr3:127,014,740
INFO	2026-06-08 09:08:16	MarkDuplicates	Written   130,000,000 records.  Elapsed time: 00:03:13s.  Time for last 10,000,000:   14s.  Last read position: chr3:196,075,321
INFO	2026-06-08 09:08:30	MarkDuplicates	Written   140,000,000 records.  Elapsed time: 00:03:27s.  Time for last 10,000,000:   14s.  Last read position: chr4:108,014,429
INFO	2026-06-08 09:08:44	MarkDuplicates	Written   150,000,000 records.  Elapsed time: 00:03:42s.  Time for last 10,000,000:   14s.  Last read position: chr5:50,841,966
INFO	2026-06-08 09:08:59	MarkDuplicates	Written   160,000,000 records.  Elapsed time: 00:03:56s.  Time for last 10,000,000:   14s.  Last read position: chr5:141,649,172
INFO	2026-06-08 09:09:13	MarkDuplicates	Written   170,000,000 records.  Elapsed time: 00:04:11s.  Time for last 10,000,000:   14s.  Last read position: chr5:179,869,823
INFO	2026-06-08 09:09:27	MarkDuplicates	Written   180,000,000 records.  Elapsed time: 00:04:25s.  Time for last 10,000,000:   14s.  Last read position: chr6:31,829,104
INFO	2026-06-08 09:09:42	MarkDuplicates	Written   190,000,000 records.  Elapsed time: 00:04:39s.  Time for last 10,000,000:   14s.  Last read position: chr6:87,518,179
INFO	2026-06-08 09:09:57	MarkDuplicates	Written   200,000,000 records.  Elapsed time: 00:04:54s.  Time for last 10,000,000:   14s.  Last read position: chr7:1,444,980
INFO	2026-06-08 09:10:11	MarkDuplicates	Written   210,000,000 records.  Elapsed time: 00:05:09s.  Time for last 10,000,000:   14s.  Last read position: chr7:40,094,757
INFO	2026-06-08 09:10:27	MarkDuplicates	Written   220,000,000 records.  Elapsed time: 00:05:24s.  Time for last 10,000,000:   15s.  Last read position: chr7:76,329,755
INFO	2026-06-08 09:10:42	MarkDuplicates	Written   230,000,000 records.  Elapsed time: 00:05:39s.  Time for last 10,000,000:   14s.  Last read position: chr7:100,993,934
INFO	2026-06-08 09:10:56	MarkDuplicates	Written   240,000,000 records.  Elapsed time: 00:05:53s.  Time for last 10,000,000:   14s.  Last read position: chr7:116,700,124
INFO	2026-06-08 09:11:10	MarkDuplicates	Written   250,000,000 records.  Elapsed time: 00:06:08s.  Time for last 10,000,000:   14s.  Last read position: chr7:148,800,563
INFO	2026-06-08 09:11:25	MarkDuplicates	Written   260,000,000 records.  Elapsed time: 00:06:22s.  Time for last 10,000,000:   14s.  Last read position: chr8:47,782,477
INFO	2026-06-08 09:11:40	MarkDuplicates	Written   270,000,000 records.  Elapsed time: 00:06:38s.  Time for last 10,000,000:   15s.  Last read position: chr8:143,574,929
INFO	2026-06-08 09:11:54	MarkDuplicates	Written   280,000,000 records.  Elapsed time: 00:06:51s.  Time for last 10,000,000:   13s.  Last read position: chr8:143,866,045
INFO	2026-06-08 09:12:08	MarkDuplicates	Written   290,000,000 records.  Elapsed time: 00:07:06s.  Time for last 10,000,000:   14s.  Last read position: chr9:33,135,189
INFO	2026-06-08 09:12:23	MarkDuplicates	Written   300,000,000 records.  Elapsed time: 00:07:20s.  Time for last 10,000,000:   14s.  Last read position: chr9:121,760,181
INFO	2026-06-08 09:12:37	MarkDuplicates	Written   310,000,000 records.  Elapsed time: 00:07:35s.  Time for last 10,000,000:   14s.  Last read position: chr9:137,050,900
INFO	2026-06-08 09:12:52	MarkDuplicates	Written   320,000,000 records.  Elapsed time: 00:07:49s.  Time for last 10,000,000:   14s.  Last read position: chr10:73,539,446
INFO	2026-06-08 09:13:06	MarkDuplicates	Written   330,000,000 records.  Elapsed time: 00:08:04s.  Time for last 10,000,000:   14s.  Last read position: chr10:122,084,690
INFO	2026-06-08 09:13:20	MarkDuplicates	Written   340,000,000 records.  Elapsed time: 00:08:18s.  Time for last 10,000,000:   14s.  Last read position: chr11:10,797,742
INFO	2026-06-08 09:13:35	MarkDuplicates	Written   350,000,000 records.  Elapsed time: 00:08:32s.  Time for last 10,000,000:   14s.  Last read position: chr11:62,774,619
INFO	2026-06-08 09:13:49	MarkDuplicates	Written   360,000,000 records.  Elapsed time: 00:08:47s.  Time for last 10,000,000:   14s.  Last read position: chr11:73,409,568
INFO	2026-06-08 09:14:04	MarkDuplicates	Written   370,000,000 records.  Elapsed time: 00:09:02s.  Time for last 10,000,000:   15s.  Last read position: chr12:3,211,804
INFO	2026-06-08 09:14:20	MarkDuplicates	Written   380,000,000 records.  Elapsed time: 00:09:17s.  Time for last 10,000,000:   15s.  Last read position: chr12:52,900,620
INFO	2026-06-08 09:14:34	MarkDuplicates	Written   390,000,000 records.  Elapsed time: 00:09:31s.  Time for last 10,000,000:   14s.  Last read position: chr12:71,638,441
INFO	2026-06-08 09:14:49	MarkDuplicates	Written   400,000,000 records.  Elapsed time: 00:09:46s.  Time for last 10,000,000:   14s.  Last read position: chr12:130,535,408
INFO	2026-06-08 09:15:03	MarkDuplicates	Written   410,000,000 records.  Elapsed time: 00:10:00s.  Time for last 10,000,000:   14s.  Last read position: chr14:21,487,646
INFO	2026-06-08 09:15:17	MarkDuplicates	Written   420,000,000 records.  Elapsed time: 00:10:15s.  Time for last 10,000,000:   14s.  Last read position: chr14:89,162,704
INFO	2026-06-08 09:15:32	MarkDuplicates	Written   430,000,000 records.  Elapsed time: 00:10:29s.  Time for last 10,000,000:   14s.  Last read position: chr15:41,762,210
INFO	2026-06-08 09:15:46	MarkDuplicates	Written   440,000,000 records.  Elapsed time: 00:10:44s.  Time for last 10,000,000:   14s.  Last read position: chr15:90,231,378
INFO	2026-06-08 09:16:01	MarkDuplicates	Written   450,000,000 records.  Elapsed time: 00:10:58s.  Time for last 10,000,000:   14s.  Last read position: chr16:4,461,875
INFO	2026-06-08 09:16:15	MarkDuplicates	Written   460,000,000 records.  Elapsed time: 00:11:12s.  Time for last 10,000,000:   14s.  Last read position: chr16:21,835,510
INFO	2026-06-08 09:16:29	MarkDuplicates	Written   470,000,000 records.  Elapsed time: 00:11:26s.  Time for last 10,000,000:   14s.  Last read position: chr16:57,067,441
INFO	2026-06-08 09:16:44	MarkDuplicates	Written   480,000,000 records.  Elapsed time: 00:11:41s.  Time for last 10,000,000:   14s.  Last read position: chr17:443,270
INFO	2026-06-08 09:16:58	MarkDuplicates	Written   490,000,000 records.  Elapsed time: 00:11:55s.  Time for last 10,000,000:   14s.  Last read position: chr17:30,427,443
INFO	2026-06-08 09:17:12	MarkDuplicates	Written   500,000,000 records.  Elapsed time: 00:12:10s.  Time for last 10,000,000:   14s.  Last read position: chr17:46,297,224
INFO	2026-06-08 09:17:28	MarkDuplicates	Written   510,000,000 records.  Elapsed time: 00:12:25s.  Time for last 10,000,000:   15s.  Last read position: chr17:50,192,656
INFO	2026-06-08 09:17:42	MarkDuplicates	Written   520,000,000 records.  Elapsed time: 00:12:39s.  Time for last 10,000,000:   14s.  Last read position: chr17:58,999,308
INFO	2026-06-08 09:17:56	MarkDuplicates	Written   530,000,000 records.  Elapsed time: 00:12:54s.  Time for last 10,000,000:   14s.  Last read position: chr18:11,619,770
INFO	2026-06-08 09:18:10	MarkDuplicates	Written   540,000,000 records.  Elapsed time: 00:13:08s.  Time for last 10,000,000:   14s.  Last read position: chr19:3,534,408
INFO	2026-06-08 09:18:25	MarkDuplicates	Written   550,000,000 records.  Elapsed time: 00:13:22s.  Time for last 10,000,000:   14s.  Last read position: chr19:13,153,340
INFO	2026-06-08 09:18:39	MarkDuplicates	Written   560,000,000 records.  Elapsed time: 00:13:36s.  Time for last 10,000,000:   14s.  Last read position: chr19:35,270,742
INFO	2026-06-08 09:18:53	MarkDuplicates	Written   570,000,000 records.  Elapsed time: 00:13:51s.  Time for last 10,000,000:   14s.  Last read position: chr19:42,290,760
INFO	2026-06-08 09:19:08	MarkDuplicates	Written   580,000,000 records.  Elapsed time: 00:14:05s.  Time for last 10,000,000:   14s.  Last read position: chr19:50,723,941
INFO	2026-06-08 09:19:22	MarkDuplicates	Written   590,000,000 records.  Elapsed time: 00:14:19s.  Time for last 10,000,000:   14s.  Last read position: chr20:31,538,205
INFO	2026-06-08 09:19:36	MarkDuplicates	Written   600,000,000 records.  Elapsed time: 00:14:34s.  Time for last 10,000,000:   14s.  Last read position: chr20:62,905,948
INFO	2026-06-08 09:19:50	MarkDuplicates	Written   610,000,000 records.  Elapsed time: 00:14:47s.  Time for last 10,000,000:   13s.  Last read position: chr21:45,456,003
INFO	2026-06-08 09:20:04	MarkDuplicates	Written   620,000,000 records.  Elapsed time: 00:15:02s.  Time for last 10,000,000:   14s.  Last read position: chr22:37,011,257
INFO	2026-06-08 09:20:18	MarkDuplicates	Written   630,000,000 records.  Elapsed time: 00:15:16s.  Time for last 10,000,000:   14s.  Last read position: chrX:40,697,105
INFO	2026-06-08 09:20:33	MarkDuplicates	Written   640,000,000 records.  Elapsed time: 00:15:30s.  Time for last 10,000,000:   14s.  Last read position: chrX:154,353,914
INFO	2026-06-08 09:20:48	MarkDuplicates	Written   650,000,000 records.  Elapsed time: 00:15:45s.  Time for last 10,000,000:   15s.  Last read position: */*
INFO	2026-06-08 09:20:53	MarkDuplicates	Writing complete. Closing input iterator.
INFO	2026-06-08 09:20:53	MarkDuplicates	Duplicate Index cleanup.
INFO	2026-06-08 09:20:53	MarkDuplicates	Getting Memory Stats.
INFO	2026-06-08 09:20:53	MarkDuplicates	Before output close freeMemory: 203216304; totalMemory: 234881024; maxMemory: 63585648640
INFO	2026-06-08 09:20:53	MarkDuplicates	Closed outputs. Getting more Memory Stats.
INFO	2026-06-08 09:20:53	MarkDuplicates	After output close freeMemory: 104109872; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:20:53 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.31 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory