Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6edd781c757f8d46f3202100ea9e9e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6edd781c757f8d46f3202100ea9e9e/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ae57a790d79b95a1c08daa9f95515/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:34.847 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:34 GMT 2026] MarkDuplicates --INPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:34 GMT 2026] Executing as ?@nf-586edd781c757f8d46f3202100ea9e9e-957ad-dshw4 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:40:34 MarkDuplicates Start of doWork freeMemory: 105830976; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:40:34 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:40:34 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,054,915
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 4338 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,626,877
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 8287 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:3,463,003
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 12328 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:6,785,531
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 16736 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 08:40:46 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,823,639
INFO 2026-06-08 08:40:46 MarkDuplicates Tracking 19876 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,997,304
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 23544 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:15,933,700
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 26811 as yet unmatched pairs. 143 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:17,103,018
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 30268 as yet unmatched pairs. 160 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 3s. Last read position: chr1:19,644,759
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 34378 as yet unmatched pairs. 519 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,828,363
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 37407 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,881,387
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 41482 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,752,437
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 44649 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:26,344,181
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 47984 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:27,350,833
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 51225 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:30,878,624
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 54729 as yet unmatched pairs. 70 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,228,725
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 58671 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:33,611,159
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 62107 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:36,319,851
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 65662 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,427,480
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 69225 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:41,513,084
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 72343 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:43,603,812
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 76247 as yet unmatched pairs. 249 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:45,511,391
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 79677 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:48,435,978
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 82897 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:54,875,191
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 86227 as yet unmatched pairs. 165 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:66,958,159
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 89559 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:88,684,559
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 92835 as yet unmatched pairs. 162 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:100,059,886
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 95392 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,757,111
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 98569 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:113,642,226
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 101943 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:116,570,919
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 104753 as yet unmatched pairs. 17 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:120,538,595
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 107561 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:146,968,458
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 109143 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,502,421
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 110585 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:150,266,053
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 113310 as yet unmatched pairs. 166 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:151,290,445
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 116399 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:153,760,346
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 119544 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:154,183,049
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 122555 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:41:49 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,058,261
INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 126359 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,672,635
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 128982 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,884
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 134065 as yet unmatched pairs. 1104 records in RAM.
INFO 2026-06-08 08:41:55 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:156,551,986
INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 136848 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:41:57 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:160,358,164
INFO 2026-06-08 08:41:57 MarkDuplicates Tracking 140173 as yet unmatched pairs. 129 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 3s. Last read position: chr1:167,411,986
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 143102 as yet unmatched pairs. 44 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:171,558,022
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 146253 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,814
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 149418 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:186,339,716
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 152619 as yet unmatched pairs. 297 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:201,387,066
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 155703 as yet unmatched pairs. 644 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:202,567,791
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 158422 as yet unmatched pairs. 82 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:204,460,364
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 161531 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:207,767,780
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 164927 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:214,663,675
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 167911 as yet unmatched pairs. 68 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:225,498,384
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 170936 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:228,147,404
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 174726 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,682
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 178695 as yet unmatched pairs. 463 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:244,856,748
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 181743 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 3s. Last read position: chr2:3,577,727
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 186388 as yet unmatched pairs. 185552 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:15,475,801
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 188695 as yet unmatched pairs. 187841 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:24,918,670
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 192120 as yet unmatched pairs. 191255 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:27,306,488
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 195709 as yet unmatched pairs. 194829 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr2:32,464,529
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 199249 as yet unmatched pairs. 198360 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,257
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 332293 as yet unmatched pairs. 191408 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 457123 as yet unmatched pairs. 185049 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1104856 as yet unmatched pairs. 151655 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,351
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 1635988 as yet unmatched pairs. 123972 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1786554 as yet unmatched pairs. 116102 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 1790620 as yet unmatched pairs. 115968 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:33,188,686
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1927180 as yet unmatched pairs. 108753 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:42,261,122
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1924518 as yet unmatched pairs. 106080 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:43,982,410
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1920890 as yet unmatched pairs. 102442 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:54,624,931
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1917852 as yet unmatched pairs. 99382 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:58,164,519
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1913640 as yet unmatched pairs. 95160 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:69,124,630
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1911018 as yet unmatched pairs. 92522 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:73,452,514
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1907480 as yet unmatched pairs. 88974 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:74,462,955
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1904445 as yet unmatched pairs. 85935 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:86,127,963
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1901032 as yet unmatched pairs. 82500 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:96,286,736
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1898513 as yet unmatched pairs. 79967 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr2:101,002,702
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1896711 as yet unmatched pairs. 78154 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:108,753,829
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1892961 as yet unmatched pairs. 74386 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:110,455,472
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1890315 as yet unmatched pairs. 71731 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:119,247,982
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1888266 as yet unmatched pairs. 69665 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:128,268,231
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 1884915 as yet unmatched pairs. 66301 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:148,469,314
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1881638 as yet unmatched pairs. 63011 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:162,008,475
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 1878809 as yet unmatched pairs. 60158 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:173,366,423
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 1875822 as yet unmatched pairs. 57156 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:181,892,072
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 1873098 as yet unmatched pairs. 54417 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:188,996,462
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1870792 as yet unmatched pairs. 52104 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:189,066,401
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 1865840 as yet unmatched pairs. 47141 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:197,501,094
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 1862965 as yet unmatched pairs. 44253 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:205,716,283
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1859988 as yet unmatched pairs. 41248 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,992
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 1857604 as yet unmatched pairs. 38853 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,679
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1854963 as yet unmatched pairs. 36209 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:215,433,401
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1851679 as yet unmatched pairs. 32923 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:217,836,015
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1848533 as yet unmatched pairs. 29766 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:218,430,750
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1844812 as yet unmatched pairs. 26039 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:219,418,539
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1846132 as yet unmatched pairs. 27338 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:219,543,408
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1836457 as yet unmatched pairs. 17641 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:231,172,592
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1832892 as yet unmatched pairs. 14026 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:233,450,039
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1830138 as yet unmatched pairs. 11263 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:237,376,900
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 1826697 as yet unmatched pairs. 7820 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:240,606,551
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1822687 as yet unmatched pairs. 3791 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr3:3,156,159
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1818875 as yet unmatched pairs. 92754 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:10,234,605
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 1815403 as yet unmatched pairs. 89267 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:15,039,168
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1811995 as yet unmatched pairs. 85832 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:33,124,486
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1808806 as yet unmatched pairs. 82620 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:39,118,109
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1805626 as yet unmatched pairs. 79417 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:42,620,057
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1802676 as yet unmatched pairs. 76451 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:46,996,350
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1799573 as yet unmatched pairs. 73328 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:47,849,630
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1795905 as yet unmatched pairs. 69641 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr3:48,569,724
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1792742 as yet unmatched pairs. 66464 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr3:49,022,489
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 1788887 as yet unmatched pairs. 62602 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,531,829
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1785490 as yet unmatched pairs. 59198 records in RAM.
INFO 2026-06-08 08:44:12 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:50,288,409
INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 1781806 as yet unmatched pairs. 55503 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:52,352,088
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 1778303 as yet unmatched pairs. 51983 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:53,497,317
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 1774732 as yet unmatched pairs. 48402 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:58,168,509
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1771733 as yet unmatched pairs. 45383 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:72,998,099
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1768606 as yet unmatched pairs. 42219 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:101,659,940
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1765667 as yet unmatched pairs. 39264 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:117,026,940
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1762756 as yet unmatched pairs. 36331 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:123,649,026
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1759934 as yet unmatched pairs. 33498 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:127,014,740
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1756368 as yet unmatched pairs. 29919 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:129,571,075
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 1752842 as yet unmatched pairs. 26369 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:141,443,479
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1749621 as yet unmatched pairs. 23135 records in RAM.
INFO 2026-06-08 08:44:32 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:152,445,348
INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1746422 as yet unmatched pairs. 19927 records in RAM.
INFO 2026-06-08 08:44:34 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr3:170,360,404
INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1743538 as yet unmatched pairs. 17034 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:184,177,003
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1740570 as yet unmatched pairs. 14043 records in RAM.
INFO 2026-06-08 08:44:37 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:185,491,529
INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1737086 as yet unmatched pairs. 10550 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:188,609,464
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1734779 as yet unmatched pairs. 8231 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,160
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1731836 as yet unmatched pairs. 5282 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,555
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1731127 as yet unmatched pairs. 4564 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:196,075,321
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1728244 as yet unmatched pairs. 1676 records in RAM.
INFO 2026-06-08 08:44:45 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr4:1,171,086
INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1724813 as yet unmatched pairs. 48543 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr4:2,625,299
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1720527 as yet unmatched pairs. 44245 records in RAM.
INFO 2026-06-08 08:44:48 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:7,763,682
INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1717111 as yet unmatched pairs. 40820 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr4:24,540,273
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 1713874 as yet unmatched pairs. 37543 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr4:41,014,185
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1710563 as yet unmatched pairs. 34221 records in RAM.
INFO 2026-06-08 08:44:53 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:56,930,898
INFO 2026-06-08 08:44:53 MarkDuplicates Tracking 1707807 as yet unmatched pairs. 31446 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr4:74,445,348
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1704963 as yet unmatched pairs. 28582 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:78,601,557
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1701033 as yet unmatched pairs. 24624 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:87,982,792
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1698108 as yet unmatched pairs. 21681 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr4:108,014,429
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1695246 as yet unmatched pairs. 18799 records in RAM.
INFO 2026-06-08 08:45:00 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,100
INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1693383 as yet unmatched pairs. 16931 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:127,812,851
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1689518 as yet unmatched pairs. 13061 records in RAM.
INFO 2026-06-08 08:45:03 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:148,435,776
INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1686756 as yet unmatched pairs. 10265 records in RAM.
INFO 2026-06-08 08:45:05 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:155,710,665
INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1683792 as yet unmatched pairs. 7282 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:173,317,690
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 1680408 as yet unmatched pairs. 3889 records in RAM.
INFO 2026-06-08 08:45:08 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:186,636,779
INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1677888 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-08 08:45:10 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr5:6,752,929
INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1673765 as yet unmatched pairs. 76960 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:14,462,753
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1670430 as yet unmatched pairs. 73610 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:32,586,408
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1667216 as yet unmatched pairs. 70388 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:50,841,966
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1664245 as yet unmatched pairs. 67410 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr5:69,177,238
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1661451 as yet unmatched pairs. 64579 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:74,636,203
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1659079 as yet unmatched pairs. 62203 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,472
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1659271 as yet unmatched pairs. 62378 records in RAM.
INFO 2026-06-08 08:45:22 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:96,767,979
INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 1653064 as yet unmatched pairs. 56152 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr5:123,036,561
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1650097 as yet unmatched pairs. 53160 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:132,486,252
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 1646889 as yet unmatched pairs. 49941 records in RAM.
INFO 2026-06-08 08:45:27 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr5:135,369,467
INFO 2026-06-08 08:45:27 MarkDuplicates Tracking 1643388 as yet unmatched pairs. 46428 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:138,511,124
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 1639934 as yet unmatched pairs. 42963 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:140,668,667
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1636693 as yet unmatched pairs. 39644 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:141,649,172
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1633485 as yet unmatched pairs. 36428 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:148,827,311
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1630295 as yet unmatched pairs. 33215 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:150,392,098
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1627010 as yet unmatched pairs. 29920 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:151,049,852
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 1623487 as yet unmatched pairs. 26389 records in RAM.
INFO 2026-06-08 08:45:39 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:160,051,141
INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1620249 as yet unmatched pairs. 23135 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,412
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1619258 as yet unmatched pairs. 22136 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:172,770,841
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1614821 as yet unmatched pairs. 17693 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:177,371,956
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1611457 as yet unmatched pairs. 14318 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:179,601,909
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1607630 as yet unmatched pairs. 10484 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:179,821,087
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 1607027 as yet unmatched pairs. 9875 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:179,869,823
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 1600435 as yet unmatched pairs. 3277 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr6:1,312,761
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1597019 as yet unmatched pairs. 91648 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:7,231,710
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1593760 as yet unmatched pairs. 88374 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:16,130,671
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1589879 as yet unmatched pairs. 84480 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:26,031,643
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1586733 as yet unmatched pairs. 81307 records in RAM.
INFO 2026-06-08 08:45:57 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,440
INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1583538 as yet unmatched pairs. 78106 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,831
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1580355 as yet unmatched pairs. 74919 records in RAM.
INFO 2026-06-08 08:46:00 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:30,744,022
INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 1576854 as yet unmatched pairs. 71406 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:31,623,865
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 1573172 as yet unmatched pairs. 67714 records in RAM.
INFO 2026-06-08 08:46:03 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,732,244
INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1570007 as yet unmatched pairs. 64546 records in RAM.
INFO 2026-06-08 08:46:05 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,104
INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1568354 as yet unmatched pairs. 62890 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:32,026,929
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 1565068 as yet unmatched pairs. 59603 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:32,978,232
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1561487 as yet unmatched pairs. 56021 records in RAM.
INFO 2026-06-08 08:46:10 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:33,417,291
INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 1558273 as yet unmatched pairs. 52800 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:35,468,422
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1554696 as yet unmatched pairs. 49206 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:41,598,787
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 1551219 as yet unmatched pairs. 45717 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:43,354,731
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1547554 as yet unmatched pairs. 42044 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:46,140,110
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 1544018 as yet unmatched pairs. 38501 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:56,605,349
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1541440 as yet unmatched pairs. 35881 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:75,165,666
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1538466 as yet unmatched pairs. 32894 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:87,518,179
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1535618 as yet unmatched pairs. 30034 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:106,974,632
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 1532339 as yet unmatched pairs. 26735 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:113,941,062
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1529158 as yet unmatched pairs. 23549 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:130,870,037
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1526148 as yet unmatched pairs. 20524 records in RAM.
INFO 2026-06-08 08:46:27 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:137,206,216
INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1523151 as yet unmatched pairs. 17516 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:147,359,293
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1519683 as yet unmatched pairs. 14041 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:152,331,075
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1516486 as yet unmatched pairs. 10809 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:158,767,323
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 1514660 as yet unmatched pairs. 8963 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:160,089,149
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1509350 as yet unmatched pairs. 3642 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:170,535,318
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1506114 as yet unmatched pairs. 391 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 3s. Last read position: chr7:1,444,980
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1503636 as yet unmatched pairs. 164808 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:2,379,167
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1497466 as yet unmatched pairs. 158612 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:5,312,750
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1493527 as yet unmatched pairs. 154667 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,377,945
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1489245 as yet unmatched pairs. 150377 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,082
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 1489207 as yet unmatched pairs. 150325 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,536
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1484691 as yet unmatched pairs. 145799 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:6,653,306
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1477543 as yet unmatched pairs. 138639 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:17,340,094
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1474433 as yet unmatched pairs. 135520 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,662
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1473311 as yet unmatched pairs. 134387 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:30,633,764
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1468075 as yet unmatched pairs. 129133 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:40,094,757
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 1464717 as yet unmatched pairs. 125770 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:44,115,877
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1461910 as yet unmatched pairs. 122960 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:45,100,365
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1458185 as yet unmatched pairs. 119228 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:55,181,329
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1454428 as yet unmatched pairs. 115457 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:66,771,936
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1450961 as yet unmatched pairs. 111962 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:72,999,734
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 1448761 as yet unmatched pairs. 109759 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:73,596,574
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1447387 as yet unmatched pairs. 108379 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr7:74,066,763
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1443219 as yet unmatched pairs. 104195 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:75,197,017
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 1440469 as yet unmatched pairs. 101429 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:75,981,587
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1438454 as yet unmatched pairs. 99406 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:76,329,755
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 1434250 as yet unmatched pairs. 95196 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:77,311,303
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1431677 as yet unmatched pairs. 92607 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:92,029,902
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1429452 as yet unmatched pairs. 90371 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:94,394,977
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 1426940 as yet unmatched pairs. 87851 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:94,421,024
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 1422921 as yet unmatched pairs. 83830 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr7:98,293,584
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 1419178 as yet unmatched pairs. 80084 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:99,479,707
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1415665 as yet unmatched pairs. 76565 records in RAM.
INFO 2026-06-08 08:47:22 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,166,628
INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 1412425 as yet unmatched pairs. 73303 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,603,975
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 1408701 as yet unmatched pairs. 69576 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,867,486
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 1405235 as yet unmatched pairs. 66100 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,934
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1402621 as yet unmatched pairs. 63483 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,670
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 1402379 as yet unmatched pairs. 63241 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,569
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 1400774 as yet unmatched pairs. 61635 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,756
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1400498 as yet unmatched pairs. 61350 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,984
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 1399159 as yet unmatched pairs. 60007 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr7:101,035,176
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1396898 as yet unmatched pairs. 57743 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:101,041,786
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 1394102 as yet unmatched pairs. 54935 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr7:102,119,081
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 1390447 as yet unmatched pairs. 51264 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,330
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 1388527 as yet unmatched pairs. 49338 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:107,372,647
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 1386161 as yet unmatched pairs. 46961 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:116,700,124
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 1384534 as yet unmatched pairs. 45311 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:117,592,444
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 1380554 as yet unmatched pairs. 41311 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:127,703,265
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 1379546 as yet unmatched pairs. 40290 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,621
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 1375859 as yet unmatched pairs. 36597 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:128,878,565
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 1370917 as yet unmatched pairs. 31645 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:134,933,862
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 1367979 as yet unmatched pairs. 28690 records in RAM.
INFO 2026-06-08 08:47:51 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:138,580,615
INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 1365086 as yet unmatched pairs. 25783 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:140,054,690
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 1361377 as yet unmatched pairs. 22068 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,294
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 1358123 as yet unmatched pairs. 18810 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr7:144,283,865
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 1356098 as yet unmatched pairs. 16784 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr7:148,800,563
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 1354172 as yet unmatched pairs. 14848 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,731
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 1350607 as yet unmatched pairs. 11274 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:151,138,142
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 1346163 as yet unmatched pairs. 6825 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:154,975,814
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 1342787 as yet unmatched pairs. 3439 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr8:3,538,914
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 1339103 as yet unmatched pairs. 103670 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:22,116,375
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 1335929 as yet unmatched pairs. 100488 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr8:27,604,941
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 1332425 as yet unmatched pairs. 96976 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 59s. Last read position: chr8:37,697,767
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 1329725 as yet unmatched pairs. 94267 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:38,288,529
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 1324096 as yet unmatched pairs. 88632 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:38,843,298
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 1321364 as yet unmatched pairs. 85898 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:47,782,477
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 1317803 as yet unmatched pairs. 82329 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:56,316,257
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 1314462 as yet unmatched pairs. 78975 records in RAM.
INFO 2026-06-08 08:49:16 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:69,624,025
INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 1311685 as yet unmatched pairs. 76181 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:76,984,075
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 1309098 as yet unmatched pairs. 73588 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr8:94,526,380
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1306199 as yet unmatched pairs. 70673 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr8:100,704,999
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 1304189 as yet unmatched pairs. 68657 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:102,275,531
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1299917 as yet unmatched pairs. 64379 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:118,110,192
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1297019 as yet unmatched pairs. 61466 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,489
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 1295898 as yet unmatched pairs. 60324 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr8:139,730,914
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 1289775 as yet unmatched pairs. 54182 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,574,929
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 1286091 as yet unmatched pairs. 50475 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,791,891
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 1281895 as yet unmatched pairs. 46268 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,398
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1279057 as yet unmatched pairs. 43421 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,394
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 1277138 as yet unmatched pairs. 41495 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,414
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 1276214 as yet unmatched pairs. 40571 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,403
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 1275205 as yet unmatched pairs. 39559 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,186
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1274743 as yet unmatched pairs. 39096 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,087
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 1275210 as yet unmatched pairs. 39563 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,881
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 1269201 as yet unmatched pairs. 33554 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,855
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1269548 as yet unmatched pairs. 33901 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,045
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 1267362 as yet unmatched pairs. 31714 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,988
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1267366 as yet unmatched pairs. 31711 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,715
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1262391 as yet unmatched pairs. 26733 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,483
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 1259291 as yet unmatched pairs. 23627 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,146
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1253253 as yet unmatched pairs. 17583 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr8:144,099,277
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1247094 as yet unmatched pairs. 11423 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,481
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1243234 as yet unmatched pairs. 7557 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:144,516,222
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 1238333 as yet unmatched pairs. 2643 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:2,123,719
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 1234745 as yet unmatched pairs. 82182 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:15,472,646
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 1231837 as yet unmatched pairs. 79251 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:33,135,189
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 1228661 as yet unmatched pairs. 76062 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:35,304,324
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 1225161 as yet unmatched pairs. 72558 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:35,736,066
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1221388 as yet unmatched pairs. 68782 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:68,357,103
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 1218735 as yet unmatched pairs. 66078 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:76,710,354
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1215446 as yet unmatched pairs. 62780 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:89,315,241
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 1212365 as yet unmatched pairs. 59692 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr9:93,645,698
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1208889 as yet unmatched pairs. 56196 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:99,828,252
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 1205522 as yet unmatched pairs. 52816 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:110,136,501
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 1202505 as yet unmatched pairs. 49794 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:114,785,666
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1198997 as yet unmatched pairs. 46283 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:121,760,181
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1196010 as yet unmatched pairs. 43289 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr9:127,108,092
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 1192452 as yet unmatched pairs. 39726 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,162
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 1188790 as yet unmatched pairs. 36051 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:128,720,519
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1185019 as yet unmatched pairs. 32277 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr9:130,393,222
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1181248 as yet unmatched pairs. 28499 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr9:131,446,543
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1178025 as yet unmatched pairs. 25274 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:133,255,297
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1174606 as yet unmatched pairs. 21846 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr9:134,758,279
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 1171047 as yet unmatched pairs. 18281 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr9:136,466,286
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1167093 as yet unmatched pairs. 14320 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:136,837,503
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1164137 as yet unmatched pairs. 11354 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr9:137,050,900
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1159043 as yet unmatched pairs. 6253 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:137,454,393
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1154320 as yet unmatched pairs. 1517 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr10:5,739,691
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1150817 as yet unmatched pairs. 60935 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr10:18,596,325
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1147562 as yet unmatched pairs. 57670 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr10:29,473,949
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1144905 as yet unmatched pairs. 55007 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr10:32,022,145
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 1143946 as yet unmatched pairs. 54045 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr10:35,529,970
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1139349 as yet unmatched pairs. 49447 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:46,819,471
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 1137101 as yet unmatched pairs. 47191 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr10:59,852,559
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1135242 as yet unmatched pairs. 45320 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:69,382,540
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1131543 as yet unmatched pairs. 41615 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr10:73,539,446
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1127954 as yet unmatched pairs. 38023 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:77,824,410
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 1124829 as yet unmatched pairs. 34892 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr10:84,372,374
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1121743 as yet unmatched pairs. 31802 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:91,992,118
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 1119041 as yet unmatched pairs. 29094 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr10:95,643,073
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 1115983 as yet unmatched pairs. 26034 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr10:99,533,387
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1112801 as yet unmatched pairs. 22840 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:102,111,068
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1109336 as yet unmatched pairs. 19362 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr10:103,602,689
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1106156 as yet unmatched pairs. 16166 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr10:110,602,994
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 1102668 as yet unmatched pairs. 12664 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:117,284,432
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 1099969 as yet unmatched pairs. 9950 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr10:122,084,690
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 1096697 as yet unmatched pairs. 6673 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr10:128,073,410
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 1093311 as yet unmatched pairs. 3276 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:133,459,843
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 1090095 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr11:319,934
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 1090217 as yet unmatched pairs. 129808 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:609,605
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 1082832 as yet unmatched pairs. 122421 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:866,580
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1078355 as yet unmatched pairs. 117933 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:1,088,284
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1075790 as yet unmatched pairs. 115364 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,808
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 1071696 as yet unmatched pairs. 111269 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:3,713,922
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 1067028 as yet unmatched pairs. 106593 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:7,987,361
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1063798 as yet unmatched pairs. 103357 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:10,797,742
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 1060721 as yet unmatched pairs. 100271 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr11:16,974,713
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1057414 as yet unmatched pairs. 96961 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 2s. Last read position: chr11:32,934,286
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1054031 as yet unmatched pairs. 93569 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:44,926,721
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1050766 as yet unmatched pairs. 90294 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:46,542,795
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1047403 as yet unmatched pairs. 86924 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:57,302,533
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1043937 as yet unmatched pairs. 83450 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr11:59,172,784
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 1040553 as yet unmatched pairs. 80062 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:61,795,479
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 1037010 as yet unmatched pairs. 76497 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,137
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1034613 as yet unmatched pairs. 74098 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:62,535,055
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 1032100 as yet unmatched pairs. 71584 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:62,774,619
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 1027962 as yet unmatched pairs. 67446 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:64,243,456
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 1024084 as yet unmatched pairs. 63563 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:64,834,285
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 1020277 as yet unmatched pairs. 59745 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:65,540,041
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1016388 as yet unmatched pairs. 55837 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:65,658,382
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 1012218 as yet unmatched pairs. 51667 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:66,316,208
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1008344 as yet unmatched pairs. 47789 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:67,284,845
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 1004361 as yet unmatched pairs. 43804 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:68,045,012
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 1000170 as yet unmatched pairs. 39610 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,850
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 997179 as yet unmatched pairs. 36593 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr11:72,013,774
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 993399 as yet unmatched pairs. 32803 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr11:73,409,568
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 988872 as yet unmatched pairs. 28270 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:76,665,893
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 985718 as yet unmatched pairs. 25101 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr11:88,294,195
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 982739 as yet unmatched pairs. 22117 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:102,206,014
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 980358 as yet unmatched pairs. 19721 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr11:114,441,622
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 976359 as yet unmatched pairs. 15716 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:118,503,453
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 973292 as yet unmatched pairs. 12645 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:119,100,375
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 969907 as yet unmatched pairs. 9254 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,646
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 968390 as yet unmatched pairs. 7735 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:128,972,465
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 963788 as yet unmatched pairs. 3131 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr12:350,663
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 960395 as yet unmatched pairs. 105210 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:3,211,804
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 957084 as yet unmatched pairs. 101889 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:6,557,203
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 953577 as yet unmatched pairs. 98375 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,937,128
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 950619 as yet unmatched pairs. 95417 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr12:9,443,531
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 947179 as yet unmatched pairs. 91975 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr12:14,456,595
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 944211 as yet unmatched pairs. 89000 records in RAM.
INFO 2026-06-08 08:52:18 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:27,317,987
INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 940968 as yet unmatched pairs. 85752 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr12:45,852,694
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 937952 as yet unmatched pairs. 82727 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:49,030,727
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 934678 as yet unmatched pairs. 79444 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:49,129,651
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 931827 as yet unmatched pairs. 76589 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:50,732,361
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 928879 as yet unmatched pairs. 73640 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:52,900,620
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 925799 as yet unmatched pairs. 70557 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr12:53,295,594
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 922264 as yet unmatched pairs. 67016 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,456
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 921150 as yet unmatched pairs. 65887 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:56,004,873
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 916715 as yet unmatched pairs. 61446 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr12:56,181,764
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 913725 as yet unmatched pairs. 58454 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:56,712,830
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 911992 as yet unmatched pairs. 56708 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,294
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 909043 as yet unmatched pairs. 53748 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,178,936
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 904736 as yet unmatched pairs. 49434 records in RAM.
INFO 2026-06-08 08:52:38 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr12:57,525,818
INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 901365 as yet unmatched pairs. 46062 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:64,759,111
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 897909 as yet unmatched pairs. 42601 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:71,638,441
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 895007 as yet unmatched pairs. 39698 records in RAM.
INFO 2026-06-08 08:52:43 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr12:93,411,228
INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 891968 as yet unmatched pairs. 36656 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:103,932,374
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 889296 as yet unmatched pairs. 33981 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:109,092,695
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 886067 as yet unmatched pairs. 30751 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,569
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 882523 as yet unmatched pairs. 27204 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr12:113,273,244
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 879362 as yet unmatched pairs. 24031 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr12:119,194,956
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 875499 as yet unmatched pairs. 20165 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:120,687,408
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 872089 as yet unmatched pairs. 16752 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:122,138,253
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 868416 as yet unmatched pairs. 13076 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,332,456
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 865250 as yet unmatched pairs. 9902 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:130,535,408
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 861351 as yet unmatched pairs. 5998 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:132,635,895
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 857334 as yet unmatched pairs. 1978 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr13:20,948,438
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 853936 as yet unmatched pairs. 23635 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr13:28,280,433
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 851034 as yet unmatched pairs. 20721 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr13:41,431,903
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 848083 as yet unmatched pairs. 17753 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr13:49,207,246
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 844952 as yet unmatched pairs. 14609 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr13:75,856,515
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 842182 as yet unmatched pairs. 11834 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr13:99,539,515
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 838867 as yet unmatched pairs. 8515 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr13:110,450,452
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 835088 as yet unmatched pairs. 4729 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr13:113,823,433
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 830968 as yet unmatched pairs. 606 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr14:21,487,646
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 827571 as yet unmatched pairs. 57092 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr14:23,276,969
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 824091 as yet unmatched pairs. 53603 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr14:24,305,621
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 820661 as yet unmatched pairs. 50172 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr14:35,046,549
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 817500 as yet unmatched pairs. 47003 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr14:49,862,579
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 815199 as yet unmatched pairs. 44674 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr14:55,598,301
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 811401 as yet unmatched pairs. 40860 records in RAM.
INFO 2026-06-08 08:53:24 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr14:64,212,954
INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 808482 as yet unmatched pairs. 37940 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr14:68,790,222
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 805921 as yet unmatched pairs. 35373 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr14:73,173,593
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 802026 as yet unmatched pairs. 31475 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,931
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 800189 as yet unmatched pairs. 29635 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr14:89,162,704
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 795643 as yet unmatched pairs. 25083 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:94,114,860
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 792126 as yet unmatched pairs. 21560 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr14:101,995,217
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 788524 as yet unmatched pairs. 17936 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:102,954,638
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 784672 as yet unmatched pairs. 14082 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:104,703,198
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 780675 as yet unmatched pairs. 10080 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr14:104,941,765
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 776812 as yet unmatched pairs. 6210 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:104,952,797
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 774021 as yet unmatched pairs. 3419 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr15:22,577,291
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 770293 as yet unmatched pairs. 48173 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr15:32,730,879
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 767889 as yet unmatched pairs. 45765 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr15:39,593,001
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 764942 as yet unmatched pairs. 42816 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr15:41,762,210
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 761259 as yet unmatched pairs. 39128 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr15:43,699,028
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 758363 as yet unmatched pairs. 36230 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr15:49,137,214
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 755203 as yet unmatched pairs. 33070 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr15:60,351,197
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 752610 as yet unmatched pairs. 30462 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr15:64,688,784
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 749175 as yet unmatched pairs. 27019 records in RAM.
INFO 2026-06-08 08:53:54 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr15:71,141,523
INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 745399 as yet unmatched pairs. 23241 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr15:74,191,175
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 742022 as yet unmatched pairs. 19862 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr15:77,056,064
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 738624 as yet unmatched pairs. 16460 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr15:82,521,403
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 735381 as yet unmatched pairs. 13211 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:85,533,824
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 733140 as yet unmatched pairs. 10966 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:90,231,378
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 729611 as yet unmatched pairs. 7424 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr15:98,707,689
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 726074 as yet unmatched pairs. 3885 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr15:101,724,101
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 722377 as yet unmatched pairs. 183 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 2s. Last read position: chr16:553,430
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 718372 as yet unmatched pairs. 116638 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:768,689
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 715405 as yet unmatched pairs. 113671 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:1,698,771
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 709542 as yet unmatched pairs. 107803 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr16:2,088,103
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 704679 as yet unmatched pairs. 102932 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,253,949
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 701370 as yet unmatched pairs. 99617 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:2,765,318
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 697317 as yet unmatched pairs. 95561 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr16:3,031,073
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 692979 as yet unmatched pairs. 91217 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:4,461,875
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 689544 as yet unmatched pairs. 87779 records in RAM.
INFO 2026-06-08 08:54:19 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr16:11,751,496
INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 685995 as yet unmatched pairs. 84217 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:14,922,191
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 683969 as yet unmatched pairs. 82190 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr16:15,623,094
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 682169 as yet unmatched pairs. 80390 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:15,724,777
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 679568 as yet unmatched pairs. 77788 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:15,759,662
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 676758 as yet unmatched pairs. 74975 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,984
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 673322 as yet unmatched pairs. 71537 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:17,108,694
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 672035 as yet unmatched pairs. 70250 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,391,173
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 670644 as yet unmatched pairs. 68859 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr16:19,629,779
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 668059 as yet unmatched pairs. 66270 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr16:21,835,510
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 666837 as yet unmatched pairs. 65048 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,290
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 665463 as yet unmatched pairs. 63672 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:27,363,463
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 663196 as yet unmatched pairs. 61402 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr16:28,735,019
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 660583 as yet unmatched pairs. 58788 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:29,457,927
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 658187 as yet unmatched pairs. 56390 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr16:29,844,800
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 655340 as yet unmatched pairs. 53542 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:30,224,693
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 651885 as yet unmatched pairs. 50082 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,641
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 649172 as yet unmatched pairs. 47364 records in RAM.
INFO 2026-06-08 08:54:44 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,152
INFO 2026-06-08 08:54:44 MarkDuplicates Tracking 645933 as yet unmatched pairs. 44125 records in RAM.
INFO 2026-06-08 08:54:46 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr16:50,323,588
INFO 2026-06-08 08:54:46 MarkDuplicates Tracking 641967 as yet unmatched pairs. 40154 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:57,067,441
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 638861 as yet unmatched pairs. 37038 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr16:66,749,288
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 635772 as yet unmatched pairs. 33949 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:67,868,501
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 631938 as yet unmatched pairs. 30113 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:69,329,167
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 628051 as yet unmatched pairs. 26221 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:70,663,821
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 625291 as yet unmatched pairs. 23453 records in RAM.
INFO 2026-06-08 08:54:55 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr16:74,456,653
INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 621695 as yet unmatched pairs. 19855 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr16:84,093,198
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 617844 as yet unmatched pairs. 15995 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:87,709,270
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 613932 as yet unmatched pairs. 12075 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr16:88,724,960
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 610029 as yet unmatched pairs. 8158 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,289
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 610186 as yet unmatched pairs. 8314 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr17:443,270
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 601695 as yet unmatched pairs. 174662 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:1,771,099
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 598191 as yet unmatched pairs. 171158 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:4,672,922
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 594733 as yet unmatched pairs. 167693 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,220,519
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 591390 as yet unmatched pairs. 164346 records in RAM.
INFO 2026-06-08 08:55:10 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:7,566,984
INFO 2026-06-08 08:55:10 MarkDuplicates Tracking 587768 as yet unmatched pairs. 160723 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:8,255,592
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 584322 as yet unmatched pairs. 157274 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:17,147,317
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 581378 as yet unmatched pairs. 154325 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:19,331,889
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 577579 as yet unmatched pairs. 150524 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:28,610,491
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 574324 as yet unmatched pairs. 147266 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:29,074,358
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 571095 as yet unmatched pairs. 144036 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:30,427,443
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 567724 as yet unmatched pairs. 140664 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:32,931,589
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 564626 as yet unmatched pairs. 137563 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:36,384,628
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 561793 as yet unmatched pairs. 134720 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:38,299,437
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 559929 as yet unmatched pairs. 132853 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:38,918,679
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 556532 as yet unmatched pairs. 129455 records in RAM.
INFO 2026-06-08 08:55:27 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,135
INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 554368 as yet unmatched pairs. 127288 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:39,727,510
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 549525 as yet unmatched pairs. 122445 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:40,878,314
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 545459 as yet unmatched pairs. 118374 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:42,581,865
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 541619 as yet unmatched pairs. 114532 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:44,117,549
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 538129 as yet unmatched pairs. 111042 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:46,297,224
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 534648 as yet unmatched pairs. 107560 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:49,317,383
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 531632 as yet unmatched pairs. 104544 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,389
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 532808 as yet unmatched pairs. 105719 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,066
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 534765 as yet unmatched pairs. 107676 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,968
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 537901 as yet unmatched pairs. 110812 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,752
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 525208 as yet unmatched pairs. 98118 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,399
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 521417 as yet unmatched pairs. 94327 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,858
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 522221 as yet unmatched pairs. 95127 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,330
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 529952 as yet unmatched pairs. 102857 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,427
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 515437 as yet unmatched pairs. 88340 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,656
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 507592 as yet unmatched pairs. 80495 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,962
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 506888 as yet unmatched pairs. 79791 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,408
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 504005 as yet unmatched pairs. 76906 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 129s. Last read position: chr17:50,195,231
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 493868 as yet unmatched pairs. 66768 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,923
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 491421 as yet unmatched pairs. 64320 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,331
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 489181 as yet unmatched pairs. 62080 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,053
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 491565 as yet unmatched pairs. 64458 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,479
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 478518 as yet unmatched pairs. 51411 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,771
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 472549 as yet unmatched pairs. 45442 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:51,168,246
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 465261 as yet unmatched pairs. 38153 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chr17:58,999,308
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 460641 as yet unmatched pairs. 33529 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:60,076,143
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 457479 as yet unmatched pairs. 30366 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr17:63,834,503
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 454441 as yet unmatched pairs. 27324 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr17:68,042,266
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 451085 as yet unmatched pairs. 23967 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr17:75,521,760
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 447668 as yet unmatched pairs. 20545 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr17:75,878,184
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 443648 as yet unmatched pairs. 16521 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:78,170,949
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 439822 as yet unmatched pairs. 12693 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:80,346,649
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 436434 as yet unmatched pairs. 9302 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chr17:81,845,946
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 432297 as yet unmatched pairs. 5161 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:82,458,726
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 428087 as yet unmatched pairs. 950 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr18:11,619,770
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 424661 as yet unmatched pairs. 11278 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr18:26,548,461
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 421412 as yet unmatched pairs. 8022 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 2s. Last read position: chr18:49,561,769
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 418563 as yet unmatched pairs. 5171 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr18:66,505,194
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 415071 as yet unmatched pairs. 1676 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 3s. Last read position: chr19:618,577
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 411419 as yet unmatched pairs. 198795 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:899,609
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 407138 as yet unmatched pairs. 194514 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr19:1,226,527
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 403021 as yet unmatched pairs. 190392 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,160
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 400013 as yet unmatched pairs. 187381 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:1,881,299
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 394311 as yet unmatched pairs. 181678 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr19:2,271,463
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 389577 as yet unmatched pairs. 176944 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:3,534,408
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 385063 as yet unmatched pairs. 172429 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:4,361,764
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 380622 as yet unmatched pairs. 167986 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:5,649,305
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 376966 as yet unmatched pairs. 164330 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:6,383,441
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 373037 as yet unmatched pairs. 160398 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr19:7,561,247
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 369285 as yet unmatched pairs. 156646 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:9,414,218
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 365078 as yet unmatched pairs. 152439 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr19:10,491,849
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 361498 as yet unmatched pairs. 148857 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 2s. Last read position: chr19:10,986,974
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 358498 as yet unmatched pairs. 145857 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr19:11,436,088
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 354244 as yet unmatched pairs. 141601 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr19:12,737,548
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 350500 as yet unmatched pairs. 137857 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,340
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 346905 as yet unmatched pairs. 134261 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:14,402,646
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 342802 as yet unmatched pairs. 130157 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:15,181,605
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 339029 as yet unmatched pairs. 126384 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:15,272,822
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 336167 as yet unmatched pairs. 123519 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:16,871,280
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 331523 as yet unmatched pairs. 118870 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr19:17,801,221
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 327276 as yet unmatched pairs. 114619 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:18,281,115
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 324203 as yet unmatched pairs. 111546 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:18,789,942
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 319150 as yet unmatched pairs. 106493 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:21,142,159
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 315326 as yet unmatched pairs. 102668 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:34,396,328
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 312481 as yet unmatched pairs. 99820 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr19:35,270,742
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 307698 as yet unmatched pairs. 95037 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:36,024,596
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 303776 as yet unmatched pairs. 91115 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:38,374,924
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 300476 as yet unmatched pairs. 87815 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr19:38,845,950
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 297034 as yet unmatched pairs. 84372 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,268
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 293372 as yet unmatched pairs. 80710 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,377
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 290296 as yet unmatched pairs. 77634 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:40,612,085
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 286964 as yet unmatched pairs. 74302 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,341,903
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 282276 as yet unmatched pairs. 69613 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,630
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 282401 as yet unmatched pairs. 69738 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:42,079,681
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 276033 as yet unmatched pairs. 63369 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:42,290,760
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 272333 as yet unmatched pairs. 59669 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:43,734,397
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 268186 as yet unmatched pairs. 55516 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:45,382,509
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 264143 as yet unmatched pairs. 51473 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:45,842,329
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 259943 as yet unmatched pairs. 47270 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr19:47,226,599
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 255894 as yet unmatched pairs. 43220 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:48,451,197
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 251815 as yet unmatched pairs. 39138 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:48,919,057
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 248310 as yet unmatched pairs. 35632 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,826
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 246198 as yet unmatched pairs. 33518 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,652,706
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 240845 as yet unmatched pairs. 28164 records in RAM.
INFO 2026-06-08 08:59:56 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 2s. Last read position: chr19:50,210,428
INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 237493 as yet unmatched pairs. 24812 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 2s. Last read position: chr19:50,723,941
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 232406 as yet unmatched pairs. 19725 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr19:54,160,981
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 229272 as yet unmatched pairs. 16588 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:54,465,135
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 226009 as yet unmatched pairs. 13323 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr19:55,406,910
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 221728 as yet unmatched pairs. 9042 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:56,307,036
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 217285 as yet unmatched pairs. 4598 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:58,545,806
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 214466 as yet unmatched pairs. 1779 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 2s. Last read position: chr20:1,369,989
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 211157 as yet unmatched pairs. 57592 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr20:3,786,372
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 206378 as yet unmatched pairs. 52813 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr20:16,462,912
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 202936 as yet unmatched pairs. 49368 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr20:20,039,640
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 199809 as yet unmatched pairs. 46240 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr20:31,538,205
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 196529 as yet unmatched pairs. 42960 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr20:34,073,846
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 192675 as yet unmatched pairs. 39105 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:35,478,041
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 189159 as yet unmatched pairs. 35589 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:36,549,147
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 186206 as yet unmatched pairs. 32636 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr20:41,166,201
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 182663 as yet unmatched pairs. 29092 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:45,333,032
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 180024 as yet unmatched pairs. 26451 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:47,636,131
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 175738 as yet unmatched pairs. 22164 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 2s. Last read position: chr20:51,601,137
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 172575 as yet unmatched pairs. 18999 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr20:58,898,941
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 168715 as yet unmatched pairs. 15133 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:62,322,717
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 164407 as yet unmatched pairs. 10825 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr20:62,905,948
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 160600 as yet unmatched pairs. 7018 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr20:63,694,929
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 156092 as yet unmatched pairs. 2507 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr21:6,492,154
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 152792 as yet unmatched pairs. 28387 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,919
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 151094 as yet unmatched pairs. 26686 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,913
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 150471 as yet unmatched pairs. 26063 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,300
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 148540 as yet unmatched pairs. 24128 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr21:26,838,038
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 146040 as yet unmatched pairs. 21628 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr21:33,567,101
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 142664 as yet unmatched pairs. 18248 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr21:38,821,652
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 139297 as yet unmatched pairs. 14875 records in RAM.
INFO 2026-06-08 09:00:40 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr21:43,425,431
INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 135664 as yet unmatched pairs. 11242 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr21:45,456,003
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 132542 as yet unmatched pairs. 8118 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr21:46,116,036
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 128167 as yet unmatched pairs. 3739 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr22:17,207,155
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 124157 as yet unmatched pairs. 58691 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:20,119,012
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 120617 as yet unmatched pairs. 55151 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:23,181,196
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 116912 as yet unmatched pairs. 51446 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,898
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 112534 as yet unmatched pairs. 47068 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:28,687,810
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 108713 as yet unmatched pairs. 43246 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr22:29,310,709
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 105463 as yet unmatched pairs. 39996 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr22:31,096,851
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 102612 as yet unmatched pairs. 37145 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr22:36,265,553
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 98531 as yet unmatched pairs. 33063 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr22:37,011,257
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 94522 as yet unmatched pairs. 29053 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr22:37,947,378
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 90724 as yet unmatched pairs. 25255 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:39,235,832
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 86944 as yet unmatched pairs. 21475 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr22:41,151,905
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 83791 as yet unmatched pairs. 18321 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:42,065,860
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 80134 as yet unmatched pairs. 14664 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:45,518,777
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 76465 as yet unmatched pairs. 10995 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,221,092
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 72309 as yet unmatched pairs. 6839 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr22:50,465,085
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 68285 as yet unmatched pairs. 2815 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:2,740,814
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 63941 as yet unmatched pairs. 47250 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:21,845,170
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 60536 as yet unmatched pairs. 43831 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chrX:40,697,105
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 57718 as yet unmatched pairs. 41011 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,564
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 55208 as yet unmatched pairs. 38499 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chrX:49,285,853
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 51004 as yet unmatched pairs. 34295 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chrX:53,647,522
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 48115 as yet unmatched pairs. 31406 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chrX:71,124,767
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 44768 as yet unmatched pairs. 28056 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chrX:77,600,434
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 41963 as yet unmatched pairs. 25251 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:102,654,372
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 39160 as yet unmatched pairs. 22447 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chrX:123,885,803
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 36218 as yet unmatched pairs. 19505 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:149,933,709
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 33328 as yet unmatched pairs. 16612 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:153,953,673
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 29360 as yet unmatched pairs. 12644 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,914
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 26153 as yet unmatched pairs. 9437 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,820
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 22718 as yet unmatched pairs. 6002 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chrX:154,468,198
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 18181 as yet unmatched pairs. 1465 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,137
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 15482 as yet unmatched pairs. 3571 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,769
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 12152 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,528
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 11922 as yet unmatched pairs. 11 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,292
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 2527 as yet unmatched pairs. 2323 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,129
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 258 as yet unmatched pairs. 54 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 647673418 records. 0 pairs never matched.
INFO 2026-06-08 09:02:23 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:23 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:02:25 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:02:25 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:02:49 OpticalDuplicateFinder Large duplicate set. size = 2567
INFO 2026-06-08 09:02:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078
INFO 2026-06-08 09:02:49 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,276
INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1779
INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,934
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1708
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,398
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,435
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,824
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,927
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,103
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,986
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,738
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1920
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,019
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,103
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:03:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,047
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,466
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,030
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1245
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,291
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1280
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,687
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,844
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,435
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1622
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,405
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,618
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1284
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,846
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,448
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,407
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,739
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1526
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,225
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1926
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,747
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1252
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,011
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1309
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,189
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,447
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,744
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1507
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,673
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,534
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,003
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,040
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:03:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,547
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1232
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,410
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,433
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,167
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,725
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1112
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,641
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1579
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,523
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1392
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,990
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1062
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,666
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,362
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,932
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1634
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,638
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1372
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,927
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,836
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,934
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,961
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,699
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1269
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,497
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,497
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,633
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1468
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,062
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,586
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1024
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,857
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,376
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1163
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:03:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,025
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,492
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,160
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1853
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,762
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,170
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 3064
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,817
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,553
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,751
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,425
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 4072
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,187
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,806
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,144
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,175
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,686
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,573
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,302
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,775
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,565
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1289
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,824
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 2291
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,645
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,119
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 2042
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,288
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,924
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1508
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,326
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1628
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,768
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,992
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1535
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,060
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1974
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,566
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1302
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,989
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1397
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,015
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,062
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1777
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,934
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,100
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,923
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1424
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,641
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 1556
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,615
INFO 2026-06-08 09:03:25 OpticalDuplicateFinder Large duplicate set. size = 2783
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,442
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,807
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,280
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,258
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,089
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1614
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,280
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1437
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,009
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,651
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,140
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1481
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,441
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,699
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,402
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,858
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,476
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,090
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,088
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1578
INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,870
INFO 2026-06-08 09:03:54 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 09:03:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,904
INFO 2026-06-08 09:03:54 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:03:54 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:04:59 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:05:02 MarkDuplicates After generateDuplicateIndexes freeMemory: 203914408; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:02 MarkDuplicates Marking 325262443 records as duplicates.
INFO 2026-06-08 09:05:02 MarkDuplicates Found 6920721 optical duplicate clusters.
INFO 2026-06-08 09:05:02 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:05:21 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:21,828,363
INFO 2026-06-08 09:05:36 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 14s. Last read position: chr1:41,513,084
INFO 2026-06-08 09:05:50 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 14s. Last read position: chr1:116,570,919
INFO 2026-06-08 09:06:05 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:03s. Time for last 10,000,000: 15s. Last read position: chr1:156,134,884
INFO 2026-06-08 09:06:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 14s. Last read position: chr1:207,767,780
INFO 2026-06-08 09:06:35 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 14s. Last read position: chr2:32,464,529
INFO 2026-06-08 09:06:49 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:46s. Time for last 10,000,000: 14s. Last read position: chr2:54,624,931
INFO 2026-06-08 09:07:03 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:00s. Time for last 10,000,000: 14s. Last read position: chr2:119,247,982
INFO 2026-06-08 09:07:18 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 14s. Last read position: chr2:215,367,992
INFO 2026-06-08 09:07:32 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:29s. Time for last 10,000,000: 14s. Last read position: chr2:240,606,551
INFO 2026-06-08 09:07:47 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 15s. Last read position: chr3:49,022,489
INFO 2026-06-08 09:08:01 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 14s. Last read position: chr3:127,014,740
INFO 2026-06-08 09:08:16 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:13s. Time for last 10,000,000: 14s. Last read position: chr3:196,075,321
INFO 2026-06-08 09:08:30 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:27s. Time for last 10,000,000: 14s. Last read position: chr4:108,014,429
INFO 2026-06-08 09:08:44 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:42s. Time for last 10,000,000: 14s. Last read position: chr5:50,841,966
INFO 2026-06-08 09:08:59 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 14s. Last read position: chr5:141,649,172
INFO 2026-06-08 09:09:13 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:11s. Time for last 10,000,000: 14s. Last read position: chr5:179,869,823
INFO 2026-06-08 09:09:27 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:25s. Time for last 10,000,000: 14s. Last read position: chr6:31,829,104
INFO 2026-06-08 09:09:42 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 14s. Last read position: chr6:87,518,179
INFO 2026-06-08 09:09:57 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:04:54s. Time for last 10,000,000: 14s. Last read position: chr7:1,444,980
INFO 2026-06-08 09:10:11 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 14s. Last read position: chr7:40,094,757
INFO 2026-06-08 09:10:27 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:24s. Time for last 10,000,000: 15s. Last read position: chr7:76,329,755
INFO 2026-06-08 09:10:42 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 14s. Last read position: chr7:100,993,934
INFO 2026-06-08 09:10:56 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 14s. Last read position: chr7:116,700,124
INFO 2026-06-08 09:11:10 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 14s. Last read position: chr7:148,800,563
INFO 2026-06-08 09:11:25 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:22s. Time for last 10,000,000: 14s. Last read position: chr8:47,782,477
INFO 2026-06-08 09:11:40 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 15s. Last read position: chr8:143,574,929
INFO 2026-06-08 09:11:54 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 13s. Last read position: chr8:143,866,045
INFO 2026-06-08 09:12:08 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:06s. Time for last 10,000,000: 14s. Last read position: chr9:33,135,189
INFO 2026-06-08 09:12:23 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 14s. Last read position: chr9:121,760,181
INFO 2026-06-08 09:12:37 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 14s. Last read position: chr9:137,050,900
INFO 2026-06-08 09:12:52 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 14s. Last read position: chr10:73,539,446
INFO 2026-06-08 09:13:06 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:04s. Time for last 10,000,000: 14s. Last read position: chr10:122,084,690
INFO 2026-06-08 09:13:20 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:18s. Time for last 10,000,000: 14s. Last read position: chr11:10,797,742
INFO 2026-06-08 09:13:35 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 14s. Last read position: chr11:62,774,619
INFO 2026-06-08 09:13:49 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:08:47s. Time for last 10,000,000: 14s. Last read position: chr11:73,409,568
INFO 2026-06-08 09:14:04 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:02s. Time for last 10,000,000: 15s. Last read position: chr12:3,211,804
INFO 2026-06-08 09:14:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 15s. Last read position: chr12:52,900,620
INFO 2026-06-08 09:14:34 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 14s. Last read position: chr12:71,638,441
INFO 2026-06-08 09:14:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 14s. Last read position: chr12:130,535,408
INFO 2026-06-08 09:15:03 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 14s. Last read position: chr14:21,487,646
INFO 2026-06-08 09:15:17 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:15s. Time for last 10,000,000: 14s. Last read position: chr14:89,162,704
INFO 2026-06-08 09:15:32 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 14s. Last read position: chr15:41,762,210
INFO 2026-06-08 09:15:46 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:10:44s. Time for last 10,000,000: 14s. Last read position: chr15:90,231,378
INFO 2026-06-08 09:16:01 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:10:58s. Time for last 10,000,000: 14s. Last read position: chr16:4,461,875
INFO 2026-06-08 09:16:15 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:12s. Time for last 10,000,000: 14s. Last read position: chr16:21,835,510
INFO 2026-06-08 09:16:29 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:26s. Time for last 10,000,000: 14s. Last read position: chr16:57,067,441
INFO 2026-06-08 09:16:44 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 14s. Last read position: chr17:443,270
INFO 2026-06-08 09:16:58 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:11:55s. Time for last 10,000,000: 14s. Last read position: chr17:30,427,443
INFO 2026-06-08 09:17:12 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 14s. Last read position: chr17:46,297,224
INFO 2026-06-08 09:17:28 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,192,656
INFO 2026-06-08 09:17:42 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:12:39s. Time for last 10,000,000: 14s. Last read position: chr17:58,999,308
INFO 2026-06-08 09:17:56 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 14s. Last read position: chr18:11,619,770
INFO 2026-06-08 09:18:10 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:08s. Time for last 10,000,000: 14s. Last read position: chr19:3,534,408
INFO 2026-06-08 09:18:25 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:22s. Time for last 10,000,000: 14s. Last read position: chr19:13,153,340
INFO 2026-06-08 09:18:39 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 14s. Last read position: chr19:35,270,742
INFO 2026-06-08 09:18:53 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:13:51s. Time for last 10,000,000: 14s. Last read position: chr19:42,290,760
INFO 2026-06-08 09:19:08 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 14s. Last read position: chr19:50,723,941
INFO 2026-06-08 09:19:22 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:19s. Time for last 10,000,000: 14s. Last read position: chr20:31,538,205
INFO 2026-06-08 09:19:36 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 14s. Last read position: chr20:62,905,948
INFO 2026-06-08 09:19:50 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:14:47s. Time for last 10,000,000: 13s. Last read position: chr21:45,456,003
INFO 2026-06-08 09:20:04 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 14s. Last read position: chr22:37,011,257
INFO 2026-06-08 09:20:18 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 14s. Last read position: chrX:40,697,105
INFO 2026-06-08 09:20:33 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 14s. Last read position: chrX:154,353,914
INFO 2026-06-08 09:20:48 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 15s. Last read position: */*
INFO 2026-06-08 09:20:53 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:20:53 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:20:53 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:20:53 MarkDuplicates Before output close freeMemory: 203216304; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:20:53 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:20:53 MarkDuplicates After output close freeMemory: 104109872; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:20:53 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 40.31 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory