AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 101
Pass (FILTER=PASS): 12 (11.9%)
Fail (FILTER=FAIL): 89 (88.1%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 5
All 5 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 17
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 17
confidence_below_min(low<high): 10
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(low<high);aih_curated_blacklist: 3
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 2
total_reads_below_min(6.0<8.0): 1
confidence_below_min(medium<high);aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 1
Breakdown by confidence:
high: 12 pass, 1 fail (total: 13)
low: 0 pass, 56 fail (total: 56)
medium: 0 pass, 32 fail (total: 32)
Arriba filter: 101 rows -> 12 PASS; wrote 1173_NFO_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_NFO_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_NFO_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt