File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/93202e58d5142714636fd130154445/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 13:58:56
                             Started mapping on |	Jun 08 14:05:30
                                    Finished on |	Jun 08 14:46:12
       Mapping speed, Million of reads per hour |	392.06

                          Number of input reads |	265946703
                      Average input read length |	229
                                    UNIQUE READS:
                   Uniquely mapped reads number |	252107674
                        Uniquely mapped reads % |	94.80%
                          Average mapped length |	229.09
                       Number of splices: Total |	257063256
            Number of splices: Annotated (sjdb) |	254664071
                       Number of splices: GT/AG |	253927195
                       Number of splices: GC/AG |	2117469
                       Number of splices: AT/AC |	264602
               Number of splices: Non-canonical |	753990
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.86
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9416252
             % of reads mapped to multiple loci |	3.54%
        Number of reads mapped to too many loci |	396899
             % of reads mapped to too many loci |	0.15%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3682946
                 % of reads unmapped: too short |	1.38%
                Number of reads unmapped: other |	342932
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%