Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/8e93428d04ead41ef76c6fb35d5a6a/1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/a2764a004a0bea72bf7694f7add699/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/a2764a004a0bea72bf7694f7add699/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/523610711a51c038e7bd55e50acbf8/1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: 1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
processing 1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam ... Finished