Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/618b2bfd49d7967469c6609499ec28/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ae57a790d79b95a1c08daa9f95515/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/618b2bfd49d7967469c6609499ec28/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 289299538
unpaired = 7085303
MERGED PAIRED END READS = 289299538
MATES PROCESSED = 585684379
TOTAL READS     = 296384841
DISTINCT READS  = 1.26442e+08
DISTINCT COUNTS = 1280
MAX COUNT       = 1578134
COUNTS OF 1     = 6.48289e+07
MAX TERMS       = 100
OBSERVED COUNTS (1578135)
1	64828895
2	29540208
3	14035537
4	6996760
5	3734160
6	2147143
7	1323908
8	868435
9	600015
10	428842
11	320081
12	244978
13	190958
14	153332
15	124594
16	102383
17	86035
18	72751
19	61322
20	52496
21	45669
22	39767
23	35020
24	30968
25	27581
26	24719
27	21805
28	19510
29	17526
30	16114
31	14629
32	13381
33	12138
34	11238
35	10114
36	9496
37	8682
38	8138
39	7415
40	7043
41	6513
42	6047
43	5727
44	5284
45	5095
46	4615
47	4312
48	4129
49	3915
50	3650
51	3417
52	3270
53	3069
54	2961
55	2709
56	2649
57	2510
58	2323
59	2296
60	2155
61	2090
62	1963
63	1880
64	1782
65	1764
66	1713
67	1556
68	1559
69	1510
70	1406
71	1395
72	1294
73	1253
74	1228
75	1175
76	1139
77	1098
78	1017
79	1027
80	1012
81	932
82	913
83	894
84	876
85	802
86	778
87	761
88	670
89	665
90	691
91	645
92	643
93	600
94	594
95	621
96	593
97	586
98	518
99	520
100	490
101	486
102	504
103	465
104	467
105	442
106	488
107	450
108	438
109	416
110	407
111	368
112	358
113	394
114	366
115	368
116	308
117	340
118	308
119	300
120	319
121	277
122	292
123	294
124	297
125	278
126	286
127	251
128	237
129	237
130	273
131	236
132	208
133	238
134	219
135	227
136	236
137	179
138	211
139	198
140	199
141	189
142	203
143	196
144	192
145	170
146	170
147	190
148	158
149	160
150	171
151	157
152	155
153	163
154	161
155	169
156	151
157	142
158	144
159	135
160	150
161	146
162	134
163	130
164	110
165	115
166	121
167	125
168	135
169	119
170	125
171	110
172	106
173	119
174	111
175	108
176	119
177	102
178	103
179	105
180	95
181	98
182	106
183	88
184	93
185	96
186	75
187	91
188	85
189	104
190	92
191	74
192	72
193	89
194	90
195	74
196	80
197	89
198	75
199	78
200	78
201	64
202	72
203	60
204	64
205	79
206	74
207	76
208	67
209	62
210	55
211	56
212	77
213	84
214	54
215	65
216	48
217	53
218	55
219	65
220	73
221	59
222	46
223	55
224	58
225	54
226	64
227	54
228	42
229	58
230	42
231	49
232	41
233	49
234	51
235	56
236	56
237	52
238	50
239	47
240	50
241	46
242	50
243	50
244	34
245	47
246	42
247	30
248	46
249	42
250	44
251	34
252	36
253	40
254	30
255	29
256	36
257	29
258	31
259	39
260	26
261	31
262	40
263	39
264	33
265	32
266	39
267	28
268	30
269	31
270	34
271	27
272	32
273	39
274	37
275	30
276	28
277	33
278	32
279	26
280	20
281	35
282	28
283	20
284	25
285	23
286	23
287	34
288	32
289	29
290	27
291	31
292	31
293	30
294	25
295	27
296	26
297	15
298	27
299	25
300	23
301	15
302	32
303	21
304	21
305	25
306	19
307	10
308	28
309	23
310	23
311	20
312	24
313	20
314	18
315	22
316	25
317	23
318	22
319	15
320	16
321	16
322	31
323	13
324	12
325	18
326	21
327	24
328	15
329	19
330	14
331	11
332	18
333	15
334	19
335	25
336	16
337	22
338	14
339	15
340	18
341	10
342	15
343	24
344	12
345	20
346	20
347	15
348	18
349	20
350	17
351	18
352	22
353	15
354	18
355	12
356	11
357	8
358	18
359	14
360	15
361	14
362	12
363	12
364	12
365	10
366	15
367	3
368	12
369	19
370	12
371	20
372	7
373	15
374	9
375	14
376	11
377	17
378	12
379	17
380	19
381	14
382	13
383	10
384	9
385	8
386	11
387	8
388	11
389	13
390	8
391	11
392	8
393	13
394	14
395	17
396	13
397	16
398	9
399	14
400	13
401	5
402	8
403	5
404	11
405	11
406	12
407	13
408	11
409	6
410	11
411	4
412	9
413	10
414	8
415	9
416	10
417	7
418	13
419	10
420	7
421	10
422	6
423	16
424	8
425	12
426	15
427	10
428	9
429	11
430	14
431	11
432	8
433	8
434	10
435	8
436	8
437	5
438	6
439	4
440	8
441	9
442	6
443	14
444	10
445	12
446	12
447	9
448	11
449	10
450	12
451	5
452	3
453	8
454	8
455	9
456	6
457	7
458	6
459	10
460	6
461	6
462	10
463	5
464	10
465	12
466	6
467	4
468	9
469	5
470	12
471	4
472	5
473	8
474	4
475	7
476	6
477	9
478	5
479	6
480	7
481	9
482	6
483	5
484	5
485	4
486	7
487	5
488	4
489	11
490	6
491	3
492	5
493	8
494	6
495	4
496	2
497	4
498	5
499	5
500	9
501	8
502	4
503	9
504	7
505	2
506	5
507	6
508	5
509	7
510	5
511	9
512	3
513	9
514	8
515	4
516	5
517	5
518	2
519	6
520	3
521	5
522	5
523	5
524	7
525	6
526	6
527	7
528	7
529	7
530	3
531	5
532	4
533	7
534	6
535	4
536	2
537	8
538	3
539	8
540	1
541	1
542	10
543	6
544	7
545	3
546	9
547	8
548	2
549	5
550	3
551	5
552	7
553	4
554	3
555	4
556	6
557	5
558	4
559	3
560	4
561	4
562	6
563	2
564	6
565	4
566	5
567	4
568	4
569	4
570	3
571	3
572	2
573	2
574	3
575	3
576	2
577	2
578	3
579	4
580	2
581	3
582	4
583	6
584	4
585	4
586	4
587	8
588	3
589	3
590	4
591	3
592	4
593	4
594	4
595	6
596	2
597	3
598	4
599	2
601	4
602	5
603	1
604	6
605	3
606	2
607	5
608	3
609	6
610	5
611	1
612	3
613	2
614	3
615	6
616	4
617	2
618	3
619	5
620	3
621	4
622	7
623	3
624	2
625	3
626	2
627	2
628	4
629	2
630	6
631	1
632	6
633	3
634	4
635	4
636	2
637	4
638	4
639	5
640	8
641	2
642	1
643	4
644	2
645	6
646	7
647	1
648	3
649	5
650	1
651	1
652	4
653	4
654	5
655	1
656	2
658	1
659	4
660	1
661	3
662	2
663	3
664	4
665	2
667	4
668	1
669	2
670	2
671	1
672	1
673	1
674	1
675	3
676	5
677	2
678	4
679	5
680	6
681	4
682	2
683	7
684	1
685	1
686	6
687	2
688	4
689	3
690	4
691	1
692	5
693	4
694	6
695	7
696	1
697	1
698	3
699	4
701	3
702	2
703	1
704	4
705	3
706	1
707	1
708	4
709	5
710	1
711	5
712	3
713	3
715	2
716	2
717	2
718	1
719	1
720	2
721	3
722	2
723	1
724	2
725	4
727	1
728	2
729	1
730	3
731	1
732	5
733	4
734	1
735	1
736	1
737	1
738	2
739	2
740	1
741	2
742	2
744	2
745	2
746	3
747	5
748	1
749	3
750	2
751	1
752	1
754	2
755	2
756	1
757	1
758	2
759	1
760	3
761	3
762	1
763	1
764	1
765	1
766	1
767	1
768	2
769	1
770	3
771	2
772	1
773	2
774	2
775	2
776	2
777	4
778	2
779	3
780	3
781	3
783	1
787	4
788	1
790	1
791	3
792	2
793	2
797	1
798	1
800	3
801	2
802	2
803	4
804	1
805	1
806	2
807	1
808	1
809	1
810	2
811	2
812	1
814	2
815	3
816	1
818	2
819	1
820	3
822	3
823	1
824	1
825	4
827	3
828	2
830	1
832	3
833	2
835	1
836	1
837	2
838	2
840	1
841	1
843	2
844	1
845	3
846	1
847	1
849	1
850	1
851	1
852	1
853	4
855	3
857	1
859	1
860	2
862	1
865	1
866	2
867	2
871	1
874	4
875	1
876	3
877	2
881	1
882	2
883	2
885	2
886	1
887	1
888	1
889	2
891	2
892	3
893	1
894	1
896	4
899	1
901	1
902	1
903	1
904	1
905	3
906	1
907	1
909	1
911	1
912	1
914	5
915	1
916	2
918	1
919	1
921	1
922	2
923	1
924	2
925	1
928	1
929	1
933	2
934	1
935	1
937	1
938	1
939	1
940	2
941	1
944	3
946	1
947	2
948	3
949	1
950	2
951	1
952	1
954	2
956	2
957	2
959	2
960	3
962	1
964	2
966	2
967	1
968	1
970	1
972	2
975	1
977	1
978	4
980	2
981	1
982	1
983	1
985	1
986	3
989	2
991	3
992	1
993	1
996	1
998	1
999	1
1000	2
1001	1
1007	1
1008	3
1010	2
1011	2
1015	2
1016	1
1023	2
1025	2
1026	1
1028	1
1029	1
1030	2
1031	1
1032	2
1034	1
1035	1
1036	2
1037	1
1039	1
1041	1
1044	2
1045	1
1046	1
1047	2
1049	1
1050	1
1052	1
1054	1
1058	1
1059	2
1060	2
1063	1
1066	2
1067	1
1070	2
1072	1
1074	2
1076	2
1077	1
1079	1
1085	1
1086	1
1087	2
1093	1
1094	1
1097	1
1099	2
1101	1
1103	1
1106	2
1107	1
1108	2
1113	1
1114	1
1116	1
1118	4
1120	1
1125	1
1129	2
1130	1
1132	1
1134	1
1136	2
1139	1
1143	1
1144	1
1146	2
1154	1
1156	1
1159	2
1160	1
1162	1
1168	1
1175	1
1177	1
1182	2
1190	1
1194	1
1195	2
1198	1
1199	1
1201	1
1202	1
1203	1
1205	1
1206	1
1207	3
1210	1
1214	1
1216	1
1217	1
1218	1
1228	1
1230	1
1235	1
1237	1
1238	1
1240	1
1241	1
1245	1
1247	1
1253	1
1254	1
1264	1
1268	1
1272	1
1273	1
1274	1
1281	1
1291	1
1301	2
1306	2
1312	1
1315	1
1316	1
1319	1
1322	1
1324	1
1335	1
1336	1
1338	1
1348	2
1352	1
1353	1
1354	1
1366	1
1369	1
1371	1
1375	2
1377	1
1380	1
1381	1
1382	1
1383	1
1384	1
1392	1
1395	1
1396	1
1397	1
1398	1
1403	1
1405	1
1407	1
1408	1
1414	1
1420	1
1423	1
1425	1
1427	1
1429	1
1430	3
1431	1
1434	1
1437	1
1439	1
1442	1
1446	1
1447	1
1456	1
1461	1
1462	1
1466	1
1473	1
1474	1
1480	1
1482	1
1483	1
1485	1
1488	1
1493	3
1496	1
1500	1
1507	1
1510	1
1523	3
1524	1
1527	1
1528	1
1529	1
1534	1
1535	1
1540	1
1543	1
1544	1
1548	1
1555	1
1562	1
1567	1
1569	1
1574	1
1575	1
1580	1
1584	1
1585	1
1596	1
1597	1
1600	1
1608	1
1609	1
1613	2
1614	1
1616	2
1621	1
1627	1
1629	1
1635	1
1638	1
1640	2
1641	1
1649	1
1653	1
1658	1
1675	1
1676	1
1682	1
1691	1
1698	1
1700	2
1701	2
1706	1
1709	1
1711	1
1716	1
1733	1
1736	1
1742	2
1743	1
1753	1
1754	1
1767	1
1772	1
1784	1
1800	1
1801	1
1803	1
1811	1
1821	2
1831	1
1850	1
1859	1
1865	1
1874	1
1889	1
1901	1
1933	1
1939	1
1943	1
1946	1
1951	1
1962	1
1984	1
1994	1
2003	1
2014	1
2024	1
2027	1
2049	1
2080	1
2083	1
2086	1
2115	1
2136	1
2139	1
2147	1
2162	1
2167	1
2179	1
2190	1
2215	1
2219	1
2223	1
2237	1
2238	1
2292	1
2300	1
2303	1
2328	1
2334	1
2373	1
2434	2
2456	1
2461	1
2493	1
2564	1
2584	1
2585	1
2610	1
2639	1
2657	1
2678	1
2689	1
2749	1
2788	1
2789	1
2792	2
2805	1
2885	1
2953	1
2970	1
3013	1
3101	1
3107	1
3151	1
3191	1
3228	1
3233	1
3257	1
3269	1
3309	1
3310	1
3319	1
3367	1
3389	1
3403	1
3405	1
3445	1
3448	1
3546	1
3550	1
3583	1
3597	1
3615	1
3629	1
3662	1
3670	1
3795	1
3801	1
3811	1
3817	1
3833	1
3847	1
3861	1
3887	1
3910	1
3950	1
4109	1
4183	1
4562	1
4566	1
4666	1
4737	1
4931	1
4997	1
5123	1
5680	1
6281	1
6288	1
6318	1
6414	1
6417	1
6424	1
7077	1
7367	1
8920	1
10384	1
26772	1
34569	1
109759	1
1578134	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._..._....._..........................................................
...................._...........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]