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Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/d67c5fac7f121a2ec173726a99bdd8/.command.sh
Size
472 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1)
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#!/bin/bash -euo pipefail
# Predict contamination from VAF features
predict_contamination.py \
    "1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.features.csv" \
    --output "1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.predictions.csv" \
    --threshold 0.9999 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION":
    python: $(python3 --version | sed 's/Python //g')
    predict_contamination: 1.0.0
END_VERSIONS