#!/bin/bash -euo pipefail
# Predict contamination from VAF features
predict_contamination.py \
    "1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.features.csv" \
    --output "1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.predictions.csv" \
    --threshold 0.9999 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION":
    python: $(python3 --version | sed 's/Python //g')
    predict_contamination: 1.0.0
END_VERSIONS