Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/5d298b7528f78dc4019c240b840ae9/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/65a201137a398c8dac7c4a1f711be9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/65a201137a398c8dac7c4a1f711be9/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
paired = 32831539
unpaired = 652367
MERGED PAIRED END READS = 32831539
MATES PROCESSED = 66315445
TOTAL READS = 33483906
DISTINCT READS = 2.40594e+07
DISTINCT COUNTS = 281
MAX COUNT = 134546
COUNTS OF 1 = 1.85282e+07
MAX TERMS = 100
OBSERVED COUNTS (134547)
1 18528249
2 3890973
3 976499
4 318556
5 134137
6 68187
7 39263
8 24844
9 16872
10 11986
11 8928
12 6498
13 5093
14 4099
15 3287
16 2705
17 2249
18 1804
19 1566
20 1292
21 1183
22 1031
23 883
24 780
25 687
26 580
27 521
28 481
29 430
30 351
31 379
32 267
33 296
34 262
35 231
36 227
37 196
38 205
39 185
40 141
41 141
42 140
43 126
44 110
45 124
46 122
47 91
48 94
49 93
50 92
51 78
52 75
53 56
54 53
55 61
56 70
57 58
58 59
59 56
60 55
61 39
62 37
63 35
64 36
65 27
66 33
67 42
68 30
69 28
70 22
71 20
72 27
73 25
74 25
75 24
76 25
77 19
78 22
79 18
80 19
81 22
82 14
83 15
84 11
85 21
86 15
87 15
88 18
89 19
90 7
91 12
92 8
93 11
94 16
95 12
96 12
97 16
98 8
99 10
100 14
101 7
102 8
103 6
104 9
105 10
106 4
107 7
108 10
109 4
110 6
111 4
112 11
113 3
114 5
115 5
116 12
117 7
118 3
119 8
120 5
121 5
122 7
123 2
124 6
125 7
126 8
127 3
128 8
129 7
130 6
131 6
132 7
133 3
134 2
135 4
136 2
137 3
138 5
139 2
140 6
141 3
142 4
143 1
144 5
145 3
146 2
147 3
148 2
149 1
150 2
151 4
152 1
153 1
156 2
157 1
158 1
160 2
161 3
162 4
163 1
164 5
165 4
166 1
167 3
168 2
169 4
171 1
173 2
174 2
175 2
176 2
177 4
178 3
179 1
180 1
182 1
183 1
184 3
187 1
188 2
190 1
193 1
194 2
195 2
196 5
197 4
199 1
200 2
201 1
202 1
203 1
206 2
208 2
209 1
210 2
213 2
214 1
216 1
217 1
218 1
223 2
225 3
229 3
232 1
233 2
240 2
241 1
244 1
245 1
246 1
247 1
251 1
253 1
255 1
257 1
258 1
260 1
266 1
267 1
269 1
270 1
272 1
274 1
278 1
279 1
280 1
281 1
283 2
284 1
290 1
293 1
295 1
299 1
306 1
310 1
311 1
316 1
320 1
325 1
327 1
329 2
330 1
332 3
334 1
337 1
341 1
344 1
348 1
353 1
361 2
367 1
368 1
369 2
371 1
372 1
375 1
383 1
384 1
395 1
399 1
405 1
406 1
417 1
436 1
464 2
474 2
483 1
504 1
509 1
510 1
528 1
544 1
747 1
921 1
952 1
1031 1
1114 1
1483 1
1773 1
5314 1
134546 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..........._...........__...._....................._.........._.._...._.
....................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]