Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/2843348bfef973228007448fd38815/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/171aaa7baa772dc916182c07bcf5d5/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/171aaa7baa772dc916182c07bcf5d5/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:29:33.866 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:29:33 GMT 2026] MarkDuplicates --INPUT 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.md.bam --METRICS_FILE 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:29:33 GMT 2026] Executing as ?@nf-84171aaa7baa772dc916182c07bcf5d5-6cdaa-v5t4t on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:29:33 MarkDuplicates Start of doWork freeMemory: 105828112; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:29:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:29:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,179,617
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 3172 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:29:39 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:1,564,764
INFO 2026-06-08 08:29:39 MarkDuplicates Tracking 6832 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:3,417,851
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 10019 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,014,179
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 13513 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:9,751,633
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 16528 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,923,316
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 19785 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:29:48 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:15,848,084
INFO 2026-06-08 08:29:48 MarkDuplicates Tracking 22749 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:16,965,800
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 25360 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:19,193,481
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 28663 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:21,279,283
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 31736 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:21,875,676
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 35420 as yet unmatched pairs. 531 records in RAM.
INFO 2026-06-08 08:29:56 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:22,660,983
INFO 2026-06-08 08:29:56 MarkDuplicates Tracking 38548 as yet unmatched pairs. 379 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:24,669,338
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 41169 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:29:59 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:26,760,859
INFO 2026-06-08 08:29:59 MarkDuplicates Tracking 44201 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:27,550,872
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 47408 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:30,966,159
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 50547 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 08:30:04 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:32,334,471
INFO 2026-06-08 08:30:04 MarkDuplicates Tracking 53767 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:35,010,911
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 56834 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:30:07 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:36,307,538
INFO 2026-06-08 08:30:07 MarkDuplicates Tracking 60276 as yet unmatched pairs. 417 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:39,448,618
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 62997 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:30:10 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:42,683,402
INFO 2026-06-08 08:30:10 MarkDuplicates Tracking 66255 as yet unmatched pairs. 492 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:43,603,616
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 69746 as yet unmatched pairs. 543 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:45,514,929
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 72890 as yet unmatched pairs. 507 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:50,475,640
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 75501 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:30:16 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:55,092,051
INFO 2026-06-08 08:30:16 MarkDuplicates Tracking 78426 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:30:18 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:66,905,261
INFO 2026-06-08 08:30:18 MarkDuplicates Tracking 81388 as yet unmatched pairs. 136 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:88,833,361
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 84298 as yet unmatched pairs. 242 records in RAM.
INFO 2026-06-08 08:30:21 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:100,196,203
INFO 2026-06-08 08:30:21 MarkDuplicates Tracking 86829 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:109,923,568
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 89799 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:113,590,553
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 92808 as yet unmatched pairs. 191 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:116,754,527
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 95518 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:30:29 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:119,968,219
INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 98632 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:145,336,039
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 99970 as yet unmatched pairs. 114 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:147,179,177
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 101391 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:30:32 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:149,082,052
INFO 2026-06-08 08:30:32 MarkDuplicates Tracking 102738 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:30:34 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,923,649
INFO 2026-06-08 08:30:34 MarkDuplicates Tracking 104613 as yet unmatched pairs. 306 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,153
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 107448 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:152,214,010
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 110378 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:153,948,069
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 112885 as yet unmatched pairs. 279 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,207,569
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 115668 as yet unmatched pairs. 339 records in RAM.
INFO 2026-06-08 08:30:41 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:155,059,943
INFO 2026-06-08 08:30:41 MarkDuplicates Tracking 118507 as yet unmatched pairs. 235 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:155,191,284
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 120712 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:30:44 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,614,013
INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 123352 as yet unmatched pairs. 217 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,950
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 126564 as yet unmatched pairs. 345 records in RAM.
INFO 2026-06-08 08:30:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:156,743,831
INFO 2026-06-08 08:30:47 MarkDuplicates Tracking 129685 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:160,298,988
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 132415 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:30:49 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:161,607,435
INFO 2026-06-08 08:30:49 MarkDuplicates Tracking 135191 as yet unmatched pairs. 349 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:169,131,405
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 139160 as yet unmatched pairs. 1367 records in RAM.
INFO 2026-06-08 08:30:52 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:177,960,874
INFO 2026-06-08 08:30:52 MarkDuplicates Tracking 140609 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 08:30:54 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:183,546,322
INFO 2026-06-08 08:30:54 MarkDuplicates Tracking 143699 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:192,811,492
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 145959 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:201,829,236
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 148886 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:204,201,600
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 151776 as yet unmatched pairs. 73 records in RAM.
INFO 2026-06-08 08:30:59 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:206,401,455
INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 154558 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:209,625,716
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 157406 as yet unmatched pairs. 131 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 2s. Last read position: chr1:222,676,118
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 160142 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:226,064,344
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 163185 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:230,939,358
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 166187 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:241,635,440
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 169549 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr2:1,649,354
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 172686 as yet unmatched pairs. 169121 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:14,634,307
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 175854 as yet unmatched pairs. 172184 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:24,673,400
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 178810 as yet unmatched pairs. 175078 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,239,112
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 181668 as yet unmatched pairs. 177902 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:30,764,132
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 184556 as yet unmatched pairs. 180709 records in RAM.
INFO 2026-06-08 08:31:18 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,258
INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 286012 as yet unmatched pairs. 176494 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 598553 as yet unmatched pairs. 161786 records in RAM.
INFO 2026-06-08 08:31:22 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:31:22 MarkDuplicates Tracking 1242671 as yet unmatched pairs. 131477 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 1562557 as yet unmatched pairs. 115540 records in RAM.
INFO 2026-06-08 08:31:25 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 1568341 as yet unmatched pairs. 115295 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,442
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 1681460 as yet unmatched pairs. 110041 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:42,303,139
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 1684743 as yet unmatched pairs. 107352 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:46,759,495
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 1681296 as yet unmatched pairs. 103820 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:54,631,550
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 1678622 as yet unmatched pairs. 101086 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:60,921,955
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 1675508 as yet unmatched pairs. 97906 records in RAM.
INFO 2026-06-08 08:31:35 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:69,514,690
INFO 2026-06-08 08:31:35 MarkDuplicates Tracking 1672944 as yet unmatched pairs. 95254 records in RAM.
INFO 2026-06-08 08:31:37 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:73,847,392
INFO 2026-06-08 08:31:37 MarkDuplicates Tracking 1670088 as yet unmatched pairs. 92319 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr2:75,120,588
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 1666926 as yet unmatched pairs. 89113 records in RAM.
INFO 2026-06-08 08:31:40 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:86,507,557
INFO 2026-06-08 08:31:40 MarkDuplicates Tracking 1664275 as yet unmatched pairs. 86422 records in RAM.
INFO 2026-06-08 08:31:43 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr2:96,278,933
INFO 2026-06-08 08:31:43 MarkDuplicates Tracking 1662218 as yet unmatched pairs. 84291 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:100,974,892
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 1659359 as yet unmatched pairs. 81380 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:108,740,490
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 1657012 as yet unmatched pairs. 78973 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:110,115,699
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 1655092 as yet unmatched pairs. 77023 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:113,201,328
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 1653504 as yet unmatched pairs. 75389 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:126,557,346
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 1650772 as yet unmatched pairs. 72597 records in RAM.
INFO 2026-06-08 08:31:51 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:131,519,631
INFO 2026-06-08 08:31:51 MarkDuplicates Tracking 1648012 as yet unmatched pairs. 69763 records in RAM.
INFO 2026-06-08 08:31:53 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:152,619,106
INFO 2026-06-08 08:31:53 MarkDuplicates Tracking 1645579 as yet unmatched pairs. 67211 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:168,456,421
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 1642896 as yet unmatched pairs. 64429 records in RAM.
INFO 2026-06-08 08:31:56 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:177,216,693
INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 1640437 as yet unmatched pairs. 61901 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:188,991,674
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 1638085 as yet unmatched pairs. 59483 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:195,680,585
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 1634761 as yet unmatched pairs. 56097 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:203,107,872
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 1632276 as yet unmatched pairs. 53550 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:214,781,478
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 1629594 as yet unmatched pairs. 50792 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,954
INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 1628431 as yet unmatched pairs. 49588 records in RAM.
INFO 2026-06-08 08:32:05 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,219
INFO 2026-06-08 08:32:05 MarkDuplicates Tracking 1628925 as yet unmatched pairs. 50054 records in RAM.
INFO 2026-06-08 08:32:07 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,362
INFO 2026-06-08 08:32:07 MarkDuplicates Tracking 1629794 as yet unmatched pairs. 50906 records in RAM.
INFO 2026-06-08 08:32:08 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,180
INFO 2026-06-08 08:32:08 MarkDuplicates Tracking 1621743 as yet unmatched pairs. 42839 records in RAM.
INFO 2026-06-08 08:32:10 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:215,384,033
INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 1618114 as yet unmatched pairs. 39183 records in RAM.
INFO 2026-06-08 08:32:11 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,788
INFO 2026-06-08 08:32:11 MarkDuplicates Tracking 1618080 as yet unmatched pairs. 39121 records in RAM.
INFO 2026-06-08 08:32:13 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,448
INFO 2026-06-08 08:32:13 MarkDuplicates Tracking 1614348 as yet unmatched pairs. 35369 records in RAM.
INFO 2026-06-08 08:32:14 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,180
INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 1613571 as yet unmatched pairs. 34566 records in RAM.
INFO 2026-06-08 08:32:15 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,874
INFO 2026-06-08 08:32:15 MarkDuplicates Tracking 1608943 as yet unmatched pairs. 29918 records in RAM.
INFO 2026-06-08 08:32:17 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,290
INFO 2026-06-08 08:32:17 MarkDuplicates Tracking 1608784 as yet unmatched pairs. 29731 records in RAM.
INFO 2026-06-08 08:32:18 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,928
INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 1604956 as yet unmatched pairs. 25877 records in RAM.
INFO 2026-06-08 08:32:20 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:217,808,658
INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 1597052 as yet unmatched pairs. 17921 records in RAM.
INFO 2026-06-08 08:32:21 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:218,814,643
INFO 2026-06-08 08:32:21 MarkDuplicates Tracking 1594134 as yet unmatched pairs. 14958 records in RAM.
INFO 2026-06-08 08:32:23 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:226,796,606
INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 1591295 as yet unmatched pairs. 11944 records in RAM.
INFO 2026-06-08 08:32:24 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:231,463,301
INFO 2026-06-08 08:32:24 MarkDuplicates Tracking 1588641 as yet unmatched pairs. 9206 records in RAM.
INFO 2026-06-08 08:32:26 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:236,036,612
INFO 2026-06-08 08:32:26 MarkDuplicates Tracking 1585760 as yet unmatched pairs. 6234 records in RAM.
INFO 2026-06-08 08:32:28 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:240,629,964
INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 1582729 as yet unmatched pairs. 3128 records in RAM.
INFO 2026-06-08 08:32:30 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:4,673,265
INFO 2026-06-08 08:32:30 MarkDuplicates Tracking 1579499 as yet unmatched pairs. 76194 records in RAM.
INFO 2026-06-08 08:32:31 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:11,554,881
INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 1576431 as yet unmatched pairs. 73073 records in RAM.
INFO 2026-06-08 08:32:33 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr3:16,377,990
INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 1573686 as yet unmatched pairs. 70237 records in RAM.
INFO 2026-06-08 08:32:34 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr3:37,315,431
INFO 2026-06-08 08:32:34 MarkDuplicates Tracking 1570899 as yet unmatched pairs. 67370 records in RAM.
INFO 2026-06-08 08:32:36 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:42,637,054
INFO 2026-06-08 08:32:36 MarkDuplicates Tracking 1568164 as yet unmatched pairs. 64570 records in RAM.
INFO 2026-06-08 08:32:38 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:47,009,048
INFO 2026-06-08 08:32:38 MarkDuplicates Tracking 1565713 as yet unmatched pairs. 62028 records in RAM.
INFO 2026-06-08 08:32:39 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:48,409,600
INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 1562436 as yet unmatched pairs. 58707 records in RAM.
INFO 2026-06-08 08:32:41 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr3:48,592,179
INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 1559683 as yet unmatched pairs. 55907 records in RAM.
INFO 2026-06-08 08:32:43 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr3:49,121,972
INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 1555919 as yet unmatched pairs. 52105 records in RAM.
INFO 2026-06-08 08:32:45 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:50,048,251
INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 1553205 as yet unmatched pairs. 49349 records in RAM.
INFO 2026-06-08 08:32:46 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr3:52,229,145
INFO 2026-06-08 08:32:46 MarkDuplicates Tracking 1549924 as yet unmatched pairs. 46022 records in RAM.
INFO 2026-06-08 08:32:48 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:52,693,783
INFO 2026-06-08 08:32:48 MarkDuplicates Tracking 1546723 as yet unmatched pairs. 42768 records in RAM.
INFO 2026-06-08 08:32:50 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:58,163,202
INFO 2026-06-08 08:32:50 MarkDuplicates Tracking 1544007 as yet unmatched pairs. 39988 records in RAM.
INFO 2026-06-08 08:32:51 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:94,075,978
INFO 2026-06-08 08:32:51 MarkDuplicates Tracking 1541253 as yet unmatched pairs. 37099 records in RAM.
INFO 2026-06-08 08:32:52 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:108,672,610
INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 1538615 as yet unmatched pairs. 34402 records in RAM.
INFO 2026-06-08 08:32:54 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr3:121,770,343
INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 1536020 as yet unmatched pairs. 31746 records in RAM.
INFO 2026-06-08 08:32:56 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:127,003,328
INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 1532986 as yet unmatched pairs. 28639 records in RAM.
INFO 2026-06-08 08:32:57 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:129,570,888
INFO 2026-06-08 08:32:57 MarkDuplicates Tracking 1529979 as yet unmatched pairs. 25564 records in RAM.
INFO 2026-06-08 08:32:59 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:139,366,567
INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 1526985 as yet unmatched pairs. 22486 records in RAM.
INFO 2026-06-08 08:33:00 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:150,742,500
INFO 2026-06-08 08:33:00 MarkDuplicates Tracking 1524206 as yet unmatched pairs. 19650 records in RAM.
INFO 2026-06-08 08:33:01 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:170,222,582
INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 1521716 as yet unmatched pairs. 17061 records in RAM.
INFO 2026-06-08 08:33:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:183,752,184
INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 1518966 as yet unmatched pairs. 14189 records in RAM.
INFO 2026-06-08 08:33:04 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,535
INFO 2026-06-08 08:33:04 MarkDuplicates Tracking 1516229 as yet unmatched pairs. 11397 records in RAM.
INFO 2026-06-08 08:33:06 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,432
INFO 2026-06-08 08:33:06 MarkDuplicates Tracking 1513448 as yet unmatched pairs. 8556 records in RAM.
INFO 2026-06-08 08:33:07 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:194,633,068
INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 1510631 as yet unmatched pairs. 5677 records in RAM.
INFO 2026-06-08 08:33:08 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,383
INFO 2026-06-08 08:33:08 MarkDuplicates Tracking 1510228 as yet unmatched pairs. 5252 records in RAM.
INFO 2026-06-08 08:33:10 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:195,789,769
INFO 2026-06-08 08:33:10 MarkDuplicates Tracking 1507964 as yet unmatched pairs. 2972 records in RAM.
INFO 2026-06-08 08:33:12 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:523,457
INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 1504953 as yet unmatched pairs. 37668 records in RAM.
INFO 2026-06-08 08:33:13 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr4:1,739,737
INFO 2026-06-08 08:33:13 MarkDuplicates Tracking 1501666 as yet unmatched pairs. 34321 records in RAM.
INFO 2026-06-08 08:33:14 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr4:2,933,186
INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 1498228 as yet unmatched pairs. 30840 records in RAM.
INFO 2026-06-08 08:33:16 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr4:8,306,042
INFO 2026-06-08 08:33:16 MarkDuplicates Tracking 1495095 as yet unmatched pairs. 27649 records in RAM.
INFO 2026-06-08 08:33:18 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr4:27,008,861
INFO 2026-06-08 08:33:18 MarkDuplicates Tracking 1492379 as yet unmatched pairs. 24834 records in RAM.
INFO 2026-06-08 08:33:19 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr4:51,863,495
INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 1489714 as yet unmatched pairs. 22079 records in RAM.
INFO 2026-06-08 08:33:21 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:73,085,320
INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 1486948 as yet unmatched pairs. 19239 records in RAM.
INFO 2026-06-08 08:33:22 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:77,984,647
INFO 2026-06-08 08:33:22 MarkDuplicates Tracking 1483963 as yet unmatched pairs. 16196 records in RAM.
INFO 2026-06-08 08:33:24 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:87,490,847
INFO 2026-06-08 08:33:24 MarkDuplicates Tracking 1481268 as yet unmatched pairs. 13431 records in RAM.
INFO 2026-06-08 08:33:25 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:105,937,023
INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 1478704 as yet unmatched pairs. 10786 records in RAM.
INFO 2026-06-08 08:33:26 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:125,317,653
INFO 2026-06-08 08:33:26 MarkDuplicates Tracking 1476078 as yet unmatched pairs. 8082 records in RAM.
INFO 2026-06-08 08:33:28 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr4:150,844,694
INFO 2026-06-08 08:33:28 MarkDuplicates Tracking 1473561 as yet unmatched pairs. 5469 records in RAM.
INFO 2026-06-08 08:33:30 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr4:169,122,107
INFO 2026-06-08 08:33:30 MarkDuplicates Tracking 1470929 as yet unmatched pairs. 2754 records in RAM.
INFO 2026-06-08 08:33:32 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr5:225,500
INFO 2026-06-08 08:33:32 MarkDuplicates Tracking 1468157 as yet unmatched pairs. 76768 records in RAM.
INFO 2026-06-08 08:33:35 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr5:10,260,787
INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 1465014 as yet unmatched pairs. 73540 records in RAM.
INFO 2026-06-08 08:33:37 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr5:14,397,074
INFO 2026-06-08 08:33:37 MarkDuplicates Tracking 1462441 as yet unmatched pairs. 70915 records in RAM.
INFO 2026-06-08 08:33:38 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr5:16,674,915
INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 1458792 as yet unmatched pairs. 67232 records in RAM.
INFO 2026-06-08 08:33:40 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr5:37,168,966
INFO 2026-06-08 08:33:40 MarkDuplicates Tracking 1456263 as yet unmatched pairs. 64632 records in RAM.
INFO 2026-06-08 08:33:41 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:55,969,814
INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 1453512 as yet unmatched pairs. 61805 records in RAM.
INFO 2026-06-08 08:33:43 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:70,952,405
INFO 2026-06-08 08:33:43 MarkDuplicates Tracking 1451387 as yet unmatched pairs. 59613 records in RAM.
INFO 2026-06-08 08:33:44 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:77,708,268
INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 1449014 as yet unmatched pairs. 57162 records in RAM.
INFO 2026-06-08 08:33:46 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr5:96,722,644
INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 1446635 as yet unmatched pairs. 54682 records in RAM.
INFO 2026-06-08 08:33:47 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:115,902,916
INFO 2026-06-08 08:33:47 MarkDuplicates Tracking 1443766 as yet unmatched pairs. 51684 records in RAM.
INFO 2026-06-08 08:33:49 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:132,392,386
INFO 2026-06-08 08:33:49 MarkDuplicates Tracking 1440989 as yet unmatched pairs. 48806 records in RAM.
INFO 2026-06-08 08:33:50 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,472
INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 1438327 as yet unmatched pairs. 46093 records in RAM.
INFO 2026-06-08 08:33:52 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:139,325,451
INFO 2026-06-08 08:33:52 MarkDuplicates Tracking 1435283 as yet unmatched pairs. 43007 records in RAM.
INFO 2026-06-08 08:33:53 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:141,376,312
INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 1432553 as yet unmatched pairs. 39999 records in RAM.
INFO 2026-06-08 08:33:55 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:143,400,295
INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 1429805 as yet unmatched pairs. 37192 records in RAM.
INFO 2026-06-08 08:33:56 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,123,097
INFO 2026-06-08 08:33:56 MarkDuplicates Tracking 1427119 as yet unmatched pairs. 34450 records in RAM.
INFO 2026-06-08 08:33:58 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,210
INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 1452675 as yet unmatched pairs. 59971 records in RAM.
INFO 2026-06-08 08:33:59 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,722
INFO 2026-06-08 08:33:59 MarkDuplicates Tracking 1427539 as yet unmatched pairs. 34822 records in RAM.
INFO 2026-06-08 08:34:01 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,295
INFO 2026-06-08 08:34:01 MarkDuplicates Tracking 1435660 as yet unmatched pairs. 42918 records in RAM.
INFO 2026-06-08 08:34:04 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 3s. Last read position: chr5:150,545,361
INFO 2026-06-08 08:34:04 MarkDuplicates Tracking 1414108 as yet unmatched pairs. 21346 records in RAM.
INFO 2026-06-08 08:34:06 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:151,797,254
INFO 2026-06-08 08:34:06 MarkDuplicates Tracking 1411256 as yet unmatched pairs. 18461 records in RAM.
INFO 2026-06-08 08:34:07 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:168,246,762
INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 1408556 as yet unmatched pairs. 15705 records in RAM.
INFO 2026-06-08 08:34:09 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:172,093,742
INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 1406250 as yet unmatched pairs. 13333 records in RAM.
INFO 2026-06-08 08:34:10 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:177,304,677
INFO 2026-06-08 08:34:10 MarkDuplicates Tracking 1403376 as yet unmatched pairs. 10421 records in RAM.
INFO 2026-06-08 08:34:12 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr5:179,122,646
INFO 2026-06-08 08:34:12 MarkDuplicates Tracking 1400104 as yet unmatched pairs. 7105 records in RAM.
INFO 2026-06-08 08:34:13 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,861
INFO 2026-06-08 08:34:13 MarkDuplicates Tracking 1397924 as yet unmatched pairs. 4888 records in RAM.
INFO 2026-06-08 08:34:15 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:181,224,058
INFO 2026-06-08 08:34:15 MarkDuplicates Tracking 1393876 as yet unmatched pairs. 791 records in RAM.
INFO 2026-06-08 08:34:17 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr6:3,456,021
INFO 2026-06-08 08:34:17 MarkDuplicates Tracking 1390892 as yet unmatched pairs. 93360 records in RAM.
INFO 2026-06-08 08:34:19 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:7,569,384
INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 1387740 as yet unmatched pairs. 90155 records in RAM.
INFO 2026-06-08 08:34:20 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr6:17,760,843
INFO 2026-06-08 08:34:20 MarkDuplicates Tracking 1384894 as yet unmatched pairs. 87247 records in RAM.
INFO 2026-06-08 08:34:22 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:26,184,098
INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 1381819 as yet unmatched pairs. 84117 records in RAM.
INFO 2026-06-08 08:34:23 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,078
INFO 2026-06-08 08:34:23 MarkDuplicates Tracking 1379230 as yet unmatched pairs. 81489 records in RAM.
INFO 2026-06-08 08:34:25 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,565
INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 1377813 as yet unmatched pairs. 80042 records in RAM.
INFO 2026-06-08 08:34:26 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr6:30,712,333
INFO 2026-06-08 08:34:26 MarkDuplicates Tracking 1373394 as yet unmatched pairs. 75594 records in RAM.
INFO 2026-06-08 08:34:28 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,147
INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 1372963 as yet unmatched pairs. 75133 records in RAM.
INFO 2026-06-08 08:34:29 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:31,631,731
INFO 2026-06-08 08:34:29 MarkDuplicates Tracking 1367712 as yet unmatched pairs. 69843 records in RAM.
INFO 2026-06-08 08:34:31 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:31,815,760
INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 1365008 as yet unmatched pairs. 67105 records in RAM.
INFO 2026-06-08 08:34:32 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,848
INFO 2026-06-08 08:34:32 MarkDuplicates Tracking 1364056 as yet unmatched pairs. 66141 records in RAM.
INFO 2026-06-08 08:34:34 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:31,963,993
INFO 2026-06-08 08:34:34 MarkDuplicates Tracking 1360908 as yet unmatched pairs. 62971 records in RAM.
INFO 2026-06-08 08:34:36 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr6:32,443,285
INFO 2026-06-08 08:34:36 MarkDuplicates Tracking 1358509 as yet unmatched pairs. 60541 records in RAM.
INFO 2026-06-08 08:34:38 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:33,006,434
INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 1355553 as yet unmatched pairs. 57562 records in RAM.
INFO 2026-06-08 08:34:39 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:33,403,888
INFO 2026-06-08 08:34:39 MarkDuplicates Tracking 1352665 as yet unmatched pairs. 54643 records in RAM.
INFO 2026-06-08 08:34:41 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:34,424,803
INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 1349439 as yet unmatched pairs. 51380 records in RAM.
INFO 2026-06-08 08:34:42 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:37,478,473
INFO 2026-06-08 08:34:42 MarkDuplicates Tracking 1346557 as yet unmatched pairs. 48437 records in RAM.
INFO 2026-06-08 08:34:44 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:41,927,479
INFO 2026-06-08 08:34:44 MarkDuplicates Tracking 1343402 as yet unmatched pairs. 45213 records in RAM.
INFO 2026-06-08 08:34:46 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:42,964,857
INFO 2026-06-08 08:34:46 MarkDuplicates Tracking 1340533 as yet unmatched pairs. 42271 records in RAM.
INFO 2026-06-08 08:34:47 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr6:43,445,220
INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 1337371 as yet unmatched pairs. 39069 records in RAM.
INFO 2026-06-08 08:34:49 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:44,251,754
INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 1334499 as yet unmatched pairs. 36153 records in RAM.
INFO 2026-06-08 08:34:50 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:53,522,421
INFO 2026-06-08 08:34:50 MarkDuplicates Tracking 1331694 as yet unmatched pairs. 33221 records in RAM.
INFO 2026-06-08 08:34:52 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:73,519,922
INFO 2026-06-08 08:34:52 MarkDuplicates Tracking 1329177 as yet unmatched pairs. 30657 records in RAM.
INFO 2026-06-08 08:34:53 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr6:87,630,359
INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 1326476 as yet unmatched pairs. 27898 records in RAM.
INFO 2026-06-08 08:34:55 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,327
INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 1323862 as yet unmatched pairs. 25223 records in RAM.
INFO 2026-06-08 08:34:56 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:113,857,808
INFO 2026-06-08 08:34:56 MarkDuplicates Tracking 1321807 as yet unmatched pairs. 23098 records in RAM.
INFO 2026-06-08 08:34:58 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:128,520,303
INFO 2026-06-08 08:34:58 MarkDuplicates Tracking 1317950 as yet unmatched pairs. 19175 records in RAM.
INFO 2026-06-08 08:35:00 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr6:137,881,051
INFO 2026-06-08 08:35:00 MarkDuplicates Tracking 1315937 as yet unmatched pairs. 17118 records in RAM.
INFO 2026-06-08 08:35:02 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:145,950,339
INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 1312494 as yet unmatched pairs. 13636 records in RAM.
INFO 2026-06-08 08:35:03 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:156,778,017
INFO 2026-06-08 08:35:03 MarkDuplicates Tracking 1309998 as yet unmatched pairs. 11073 records in RAM.
INFO 2026-06-08 08:35:05 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,336
INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 1308504 as yet unmatched pairs. 9527 records in RAM.
INFO 2026-06-08 08:35:06 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:159,779,656
INFO 2026-06-08 08:35:06 MarkDuplicates Tracking 1303416 as yet unmatched pairs. 4410 records in RAM.
INFO 2026-06-08 08:35:07 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr6:167,969,157
INFO 2026-06-08 08:35:07 MarkDuplicates Tracking 1300520 as yet unmatched pairs. 1456 records in RAM.
INFO 2026-06-08 08:35:10 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr7:1,474,322
INFO 2026-06-08 08:35:10 MarkDuplicates Tracking 1297415 as yet unmatched pairs. 89699 records in RAM.
INFO 2026-06-08 08:35:12 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr7:2,947,667
INFO 2026-06-08 08:35:12 MarkDuplicates Tracking 1293353 as yet unmatched pairs. 85571 records in RAM.
INFO 2026-06-08 08:35:13 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,230
INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 1290076 as yet unmatched pairs. 82234 records in RAM.
INFO 2026-06-08 08:35:14 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,526
INFO 2026-06-08 08:35:14 MarkDuplicates Tracking 1290650 as yet unmatched pairs. 82767 records in RAM.
INFO 2026-06-08 08:35:16 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr7:6,374,718
INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 1283580 as yet unmatched pairs. 75654 records in RAM.
INFO 2026-06-08 08:35:18 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:22,945,696
INFO 2026-06-08 08:35:18 MarkDuplicates Tracking 1280595 as yet unmatched pairs. 72603 records in RAM.
INFO 2026-06-08 08:35:20 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:30,633,806
INFO 2026-06-08 08:35:20 MarkDuplicates Tracking 1277751 as yet unmatched pairs. 69689 records in RAM.
INFO 2026-06-08 08:35:21 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:44,051,872
INFO 2026-06-08 08:35:21 MarkDuplicates Tracking 1275183 as yet unmatched pairs. 67040 records in RAM.
INFO 2026-06-08 08:35:23 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr7:44,767,567
INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 1272281 as yet unmatched pairs. 64099 records in RAM.
INFO 2026-06-08 08:35:25 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:55,163,742
INFO 2026-06-08 08:35:25 MarkDuplicates Tracking 1269032 as yet unmatched pairs. 60792 records in RAM.
INFO 2026-06-08 08:35:26 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:70,763,134
INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 1266352 as yet unmatched pairs. 58019 records in RAM.
INFO 2026-06-08 08:35:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,670
INFO 2026-06-08 08:35:28 MarkDuplicates Tracking 1264998 as yet unmatched pairs. 56645 records in RAM.
INFO 2026-06-08 08:35:29 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:74,744,807
INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 1262198 as yet unmatched pairs. 53797 records in RAM.
INFO 2026-06-08 08:35:31 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr7:75,985,056
INFO 2026-06-08 08:35:31 MarkDuplicates Tracking 1260506 as yet unmatched pairs. 52072 records in RAM.
INFO 2026-06-08 08:35:32 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:76,978,635
INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 1257442 as yet unmatched pairs. 48974 records in RAM.
INFO 2026-06-08 08:35:33 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr7:92,052,947
INFO 2026-06-08 08:35:33 MarkDuplicates Tracking 1255000 as yet unmatched pairs. 46487 records in RAM.
INFO 2026-06-08 08:35:35 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:94,423,071
INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 1252076 as yet unmatched pairs. 43536 records in RAM.
INFO 2026-06-08 08:35:37 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:99,365,931
INFO 2026-06-08 08:35:37 MarkDuplicates Tracking 1248840 as yet unmatched pairs. 40247 records in RAM.
INFO 2026-06-08 08:35:38 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,353,209
INFO 2026-06-08 08:35:38 MarkDuplicates Tracking 1246087 as yet unmatched pairs. 37465 records in RAM.
INFO 2026-06-08 08:35:40 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,888,501
INFO 2026-06-08 08:35:40 MarkDuplicates Tracking 1242905 as yet unmatched pairs. 34261 records in RAM.
INFO 2026-06-08 08:35:41 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,960,387
INFO 2026-06-08 08:35:41 MarkDuplicates Tracking 1240858 as yet unmatched pairs. 32194 records in RAM.
INFO 2026-06-08 08:35:43 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:102,111,707
INFO 2026-06-08 08:35:43 MarkDuplicates Tracking 1238054 as yet unmatched pairs. 29342 records in RAM.
INFO 2026-06-08 08:35:44 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:102,667,158
INFO 2026-06-08 08:35:44 MarkDuplicates Tracking 1236570 as yet unmatched pairs. 27827 records in RAM.
INFO 2026-06-08 08:35:45 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:116,234,597
INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 1233929 as yet unmatched pairs. 25112 records in RAM.
INFO 2026-06-08 08:35:47 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:127,707,555
INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 1231943 as yet unmatched pairs. 23063 records in RAM.
INFO 2026-06-08 08:35:50 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr7:128,858,098
INFO 2026-06-08 08:35:50 MarkDuplicates Tracking 1228328 as yet unmatched pairs. 19420 records in RAM.
INFO 2026-06-08 08:35:51 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:137,905,778
INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 1226782 as yet unmatched pairs. 17793 records in RAM.
INFO 2026-06-08 08:35:53 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:139,715,958
INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 1222782 as yet unmatched pairs. 13740 records in RAM.
INFO 2026-06-08 08:35:54 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,902
INFO 2026-06-08 08:35:54 MarkDuplicates Tracking 1220342 as yet unmatched pairs. 11230 records in RAM.
INFO 2026-06-08 08:35:56 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:144,286,624
INFO 2026-06-08 08:35:56 MarkDuplicates Tracking 1218040 as yet unmatched pairs. 8904 records in RAM.
INFO 2026-06-08 08:35:57 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:150,368,951
INFO 2026-06-08 08:35:57 MarkDuplicates Tracking 1215897 as yet unmatched pairs. 6733 records in RAM.
INFO 2026-06-08 08:35:58 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:151,490,954
INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 1212535 as yet unmatched pairs. 3344 records in RAM.
INFO 2026-06-08 08:36:00 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:158,617,466
INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 1209669 as yet unmatched pairs. 414 records in RAM.
INFO 2026-06-08 08:36:02 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr8:17,247,246
INFO 2026-06-08 08:36:02 MarkDuplicates Tracking 1206783 as yet unmatched pairs. 77545 records in RAM.
INFO 2026-06-08 08:36:03 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr8:22,619,343
INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 1203705 as yet unmatched pairs. 74412 records in RAM.
INFO 2026-06-08 08:36:05 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr8:30,703,153
INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 1200780 as yet unmatched pairs. 71444 records in RAM.
INFO 2026-06-08 08:36:07 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr8:38,426,167
INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 1198029 as yet unmatched pairs. 68656 records in RAM.
INFO 2026-06-08 08:36:08 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,656
INFO 2026-06-08 08:36:08 MarkDuplicates Tracking 1194844 as yet unmatched pairs. 65413 records in RAM.
INFO 2026-06-08 08:36:10 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,744
INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 1192124 as yet unmatched pairs. 62644 records in RAM.
INFO 2026-06-08 08:36:11 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:67,059,251
INFO 2026-06-08 08:36:11 MarkDuplicates Tracking 1189166 as yet unmatched pairs. 59631 records in RAM.
INFO 2026-06-08 08:36:13 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr8:74,350,416
INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 1186402 as yet unmatched pairs. 56813 records in RAM.
INFO 2026-06-08 08:36:15 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr8:94,189,219
INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 1183835 as yet unmatched pairs. 54172 records in RAM.
INFO 2026-06-08 08:36:17 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,323
INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 1182582 as yet unmatched pairs. 52843 records in RAM.
INFO 2026-06-08 08:36:18 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr8:102,268,911
INFO 2026-06-08 08:36:18 MarkDuplicates Tracking 1177900 as yet unmatched pairs. 48134 records in RAM.
INFO 2026-06-08 08:36:20 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr8:119,208,515
INFO 2026-06-08 08:36:20 MarkDuplicates Tracking 1176108 as yet unmatched pairs. 46269 records in RAM.
INFO 2026-06-08 08:37:23 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 63s. Last read position: chr8:127,736,519
INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 1173216 as yet unmatched pairs. 43332 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr8:133,248,749
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 1169543 as yet unmatched pairs. 39599 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr8:142,681,372
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 1166571 as yet unmatched pairs. 36549 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,581,318
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 1162597 as yet unmatched pairs. 32544 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr8:143,813,699
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 1159029 as yet unmatched pairs. 28922 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,808
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 1157190 as yet unmatched pairs. 27080 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,657
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 1156913 as yet unmatched pairs. 26798 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,779
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 1154274 as yet unmatched pairs. 24142 records in RAM.
INFO 2026-06-08 08:37:34 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,108
INFO 2026-06-08 08:37:34 MarkDuplicates Tracking 1153825 as yet unmatched pairs. 23689 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,990
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 1152000 as yet unmatched pairs. 21851 records in RAM.
INFO 2026-06-08 08:37:37 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,973
INFO 2026-06-08 08:37:37 MarkDuplicates Tracking 1147459 as yet unmatched pairs. 17285 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,938,196
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 1143813 as yet unmatched pairs. 13616 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr8:144,262,185
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 1139467 as yet unmatched pairs. 9240 records in RAM.
INFO 2026-06-08 08:37:41 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr8:144,400,197
INFO 2026-06-08 08:37:41 MarkDuplicates Tracking 1135804 as yet unmatched pairs. 5544 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr8:144,789,811
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 1131625 as yet unmatched pairs. 1326 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr9:8,713,575
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 1128500 as yet unmatched pairs. 56759 records in RAM.
INFO 2026-06-08 08:37:46 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr9:33,167,004
INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 1125825 as yet unmatched pairs. 53988 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:35,710,990
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 1122846 as yet unmatched pairs. 50965 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr9:71,704,654
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 1120324 as yet unmatched pairs. 48307 records in RAM.
INFO 2026-06-08 08:37:52 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr9:85,942,189
INFO 2026-06-08 08:37:52 MarkDuplicates Tracking 1117579 as yet unmatched pairs. 45512 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:93,267,783
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 1114579 as yet unmatched pairs. 42461 records in RAM.
INFO 2026-06-08 08:37:55 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr9:98,989,181
INFO 2026-06-08 08:37:55 MarkDuplicates Tracking 1111566 as yet unmatched pairs. 39396 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,205
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 1109121 as yet unmatched pairs. 36909 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr9:114,356,020
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 1105889 as yet unmatched pairs. 33642 records in RAM.
INFO 2026-06-08 08:37:59 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr9:122,313,301
INFO 2026-06-08 08:37:59 MarkDuplicates Tracking 1103015 as yet unmatched pairs. 30726 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr9:127,508,957
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 1100194 as yet unmatched pairs. 27841 records in RAM.
INFO 2026-06-08 08:38:02 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 1s. Last read position: chr9:128,263,042
INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 1096693 as yet unmatched pairs. 24299 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr9:129,022,311
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 1093526 as yet unmatched pairs. 21112 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr9:131,163,906
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 1090371 as yet unmatched pairs. 17928 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr9:133,103,229
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 1087655 as yet unmatched pairs. 15177 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr9:134,767,023
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 1084669 as yet unmatched pairs. 12149 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr9:136,475,827
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 1080944 as yet unmatched pairs. 8397 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr9:136,942,140
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 1077666 as yet unmatched pairs. 5074 records in RAM.
INFO 2026-06-08 08:38:13 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr9:137,453,145
INFO 2026-06-08 08:38:13 MarkDuplicates Tracking 1073659 as yet unmatched pairs. 1035 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr10:5,102,503
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 1070748 as yet unmatched pairs. 51948 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr10:15,135,345
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 1067968 as yet unmatched pairs. 49112 records in RAM.
INFO 2026-06-08 08:38:19 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr10:26,705,301
INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 1065094 as yet unmatched pairs. 46192 records in RAM.
INFO 2026-06-08 08:38:21 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,520
INFO 2026-06-08 08:38:21 MarkDuplicates Tracking 1062880 as yet unmatched pairs. 43950 records in RAM.
INFO 2026-06-08 08:38:22 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:45,759,364
INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 1060013 as yet unmatched pairs. 41049 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr10:49,524,697
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 1058327 as yet unmatched pairs. 39346 records in RAM.
INFO 2026-06-08 08:38:25 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr10:63,206,955
INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 1055800 as yet unmatched pairs. 36777 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr10:72,042,880
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 1052798 as yet unmatched pairs. 33731 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr10:73,913,709
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 1050145 as yet unmatched pairs. 31023 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:79,850,159
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 1047412 as yet unmatched pairs. 28247 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:91,960,137
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 1044616 as yet unmatched pairs. 25405 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr10:96,602,342
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 1041854 as yet unmatched pairs. 22605 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:100,983,715
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 1039104 as yet unmatched pairs. 19826 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr10:102,592,600
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 1035980 as yet unmatched pairs. 16672 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 1s. Last read position: chr10:112,951,508
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 1033388 as yet unmatched pairs. 14049 records in RAM.
INFO 2026-06-08 08:38:38 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:119,577,180
INFO 2026-06-08 08:38:38 MarkDuplicates Tracking 1030465 as yet unmatched pairs. 11078 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr10:122,582,662
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 1027941 as yet unmatched pairs. 8525 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr10:122,601,998
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 1027084 as yet unmatched pairs. 7658 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr10:122,614,017
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 1025260 as yet unmatched pairs. 5829 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr10:125,841,261
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 1022652 as yet unmatched pairs. 3199 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr10:133,356,653
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 1019987 as yet unmatched pairs. 490 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr11:597,405
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 1016680 as yet unmatched pairs. 123212 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr11:986,788
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 1013248 as yet unmatched pairs. 119767 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr11:1,184,331
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 1010975 as yet unmatched pairs. 117480 records in RAM.
INFO 2026-06-08 08:38:53 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr11:1,187,624
INFO 2026-06-08 08:38:53 MarkDuplicates Tracking 1009904 as yet unmatched pairs. 116402 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr11:1,191,255
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 1008238 as yet unmatched pairs. 114719 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,237,052
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 1005309 as yet unmatched pairs. 111767 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,050
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 1003114 as yet unmatched pairs. 109565 records in RAM.
INFO 2026-06-08 08:38:59 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,746
INFO 2026-06-08 08:38:59 MarkDuplicates Tracking 1003394 as yet unmatched pairs. 109845 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,513
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 1001560 as yet unmatched pairs. 108009 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,198
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 1000160 as yet unmatched pairs. 106609 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,529
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 998826 as yet unmatched pairs. 105256 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,328
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 997879 as yet unmatched pairs. 104304 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,219
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 996966 as yet unmatched pairs. 103384 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,906
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 995846 as yet unmatched pairs. 102259 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,185
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 993628 as yet unmatched pairs. 100033 records in RAM.
INFO 2026-06-08 08:39:09 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,855
INFO 2026-06-08 08:39:09 MarkDuplicates Tracking 990129 as yet unmatched pairs. 96529 records in RAM.
INFO 2026-06-08 08:39:11 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,761,334
INFO 2026-06-08 08:39:11 MarkDuplicates Tracking 988038 as yet unmatched pairs. 94424 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr11:6,533,082
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 983519 as yet unmatched pairs. 89865 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:10,751,417
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 980415 as yet unmatched pairs. 86725 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr11:19,229,680
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 977801 as yet unmatched pairs. 84083 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:36,401,162
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 974961 as yet unmatched pairs. 81188 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr11:46,379,470
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 972169 as yet unmatched pairs. 78370 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,243
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 968934 as yet unmatched pairs. 75108 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr11:59,148,857
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 966313 as yet unmatched pairs. 72447 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:61,771,555
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 964154 as yet unmatched pairs. 70227 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,353
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 961072 as yet unmatched pairs. 67124 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr11:62,602,304
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 958331 as yet unmatched pairs. 64346 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr11:63,988,351
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 955194 as yet unmatched pairs. 61188 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:64,768,137
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 952183 as yet unmatched pairs. 58144 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,499,560
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 948444 as yet unmatched pairs. 54295 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:65,636,525
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 945280 as yet unmatched pairs. 51061 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:65,863,605
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 941570 as yet unmatched pairs. 47330 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:66,366,110
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 938275 as yet unmatched pairs. 44022 records in RAM.
INFO 2026-06-08 08:39:37 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:67,398,534
INFO 2026-06-08 08:39:37 MarkDuplicates Tracking 934907 as yet unmatched pairs. 40615 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 2s. Last read position: chr11:68,262,069
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 931290 as yet unmatched pairs. 36977 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:70,111,085
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 928343 as yet unmatched pairs. 34004 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:72,109,881
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 925230 as yet unmatched pairs. 30863 records in RAM.
INFO 2026-06-08 08:39:45 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:74,843,285
INFO 2026-06-08 08:39:45 MarkDuplicates Tracking 922030 as yet unmatched pairs. 27636 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:78,073,074
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 919108 as yet unmatched pairs. 24684 records in RAM.
INFO 2026-06-08 08:39:48 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:95,985,626
INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 916261 as yet unmatched pairs. 21798 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:102,162,479
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 915133 as yet unmatched pairs. 20640 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:102,402,038
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 911719 as yet unmatched pairs. 17194 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:108,353,767
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 907976 as yet unmatched pairs. 13408 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:117,315,742
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 905100 as yet unmatched pairs. 10498 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:118,902,835
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 902255 as yet unmatched pairs. 7629 records in RAM.
INFO 2026-06-08 08:39:57 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,561
INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 899660 as yet unmatched pairs. 4991 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:129,874,196
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 896770 as yet unmatched pairs. 2055 records in RAM.
INFO 2026-06-08 08:40:00 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr12:868,535
INFO 2026-06-08 08:40:00 MarkDuplicates Tracking 893561 as yet unmatched pairs. 76202 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr12:6,327,452
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 890647 as yet unmatched pairs. 73264 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:6,678,303
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 887676 as yet unmatched pairs. 70277 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:7,070,237
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 884786 as yet unmatched pairs. 67371 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr12:10,722,914
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 882080 as yet unmatched pairs. 64632 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:14,950,596
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 879560 as yet unmatched pairs. 62073 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr12:31,091,451
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 876866 as yet unmatched pairs. 59317 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:47,802,228
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 874213 as yet unmatched pairs. 56628 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,974
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 871276 as yet unmatched pairs. 53668 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr12:49,990,225
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 868929 as yet unmatched pairs. 51298 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,658
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 865956 as yet unmatched pairs. 48286 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr12:53,459,330
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 863284 as yet unmatched pairs. 45597 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr12:55,838,575
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 860299 as yet unmatched pairs. 42599 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr12:56,343,920
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 858037 as yet unmatched pairs. 40322 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr12:57,097,114
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 857058 as yet unmatched pairs. 39323 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr12:57,180,108
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 852074 as yet unmatched pairs. 34323 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:57,535,767
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 849051 as yet unmatched pairs. 31278 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:69,258,832
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 846260 as yet unmatched pairs. 28444 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr12:92,145,388
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 843500 as yet unmatched pairs. 25647 records in RAM.
INFO 2026-06-08 08:40:30 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr12:103,943,831
INFO 2026-06-08 08:40:30 MarkDuplicates Tracking 840900 as yet unmatched pairs. 23020 records in RAM.
INFO 2026-06-08 08:40:32 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:110,326,459
INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 838050 as yet unmatched pairs. 20137 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:112,911,229
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 835061 as yet unmatched pairs. 17131 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr12:120,142,566
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 832183 as yet unmatched pairs. 14216 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:121,817,396
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 829084 as yet unmatched pairs. 11099 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:123,404,899
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 826065 as yet unmatched pairs. 8059 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr12:124,795,232
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 823003 as yet unmatched pairs. 4981 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:132,624,676
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 819717 as yet unmatched pairs. 1657 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr13:21,140,624
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 816874 as yet unmatched pairs. 17468 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr13:32,536,782
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 814154 as yet unmatched pairs. 14710 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr13:46,127,542
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 811311 as yet unmatched pairs. 11823 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr13:73,062,512
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 808729 as yet unmatched pairs. 9202 records in RAM.
INFO 2026-06-08 08:40:49 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr13:99,574,226
INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 805616 as yet unmatched pairs. 6049 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr13:110,641,498
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 802383 as yet unmatched pairs. 2797 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr14:20,447,927
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 799154 as yet unmatched pairs. 59606 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr14:22,876,135
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 796196 as yet unmatched pairs. 56625 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr14:24,145,398
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 793774 as yet unmatched pairs. 54180 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr14:32,137,888
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 790203 as yet unmatched pairs. 50583 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr14:49,618,903
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 787770 as yet unmatched pairs. 48023 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr14:55,062,958
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 784996 as yet unmatched pairs. 45203 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 2s. Last read position: chr14:64,051,830
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 782450 as yet unmatched pairs. 42605 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr14:67,772,129
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 779484 as yet unmatched pairs. 39606 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr14:70,595,313
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 776454 as yet unmatched pairs. 36546 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr14:74,501,490
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 773739 as yet unmatched pairs. 33804 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr14:76,735,370
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 770686 as yet unmatched pairs. 30731 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr14:91,313,361
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 767878 as yet unmatched pairs. 27888 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr14:96,502,463
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 764947 as yet unmatched pairs. 24923 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr14:102,008,224
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 761922 as yet unmatched pairs. 21823 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr14:102,980,866
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 758880 as yet unmatched pairs. 18769 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr14:104,774,970
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 755465 as yet unmatched pairs. 15323 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr14:105,367,288
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 752242 as yet unmatched pairs. 12074 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,153
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 756484 as yet unmatched pairs. 16304 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,515
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 750818 as yet unmatched pairs. 10630 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,138
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 745788 as yet unmatched pairs. 5575 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,992
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 744692 as yet unmatched pairs. 4454 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr15:22,516,873
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 740095 as yet unmatched pairs. 51443 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr15:29,710,896
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 738072 as yet unmatched pairs. 49398 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr15:34,382,868
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 735587 as yet unmatched pairs. 46895 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr15:40,351,051
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 733325 as yet unmatched pairs. 44613 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr15:41,754,469
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 730307 as yet unmatched pairs. 41561 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr15:43,595,385
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 727790 as yet unmatched pairs. 39023 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr15:44,584,038
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 725080 as yet unmatched pairs. 36301 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr15:51,498,672
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 722014 as yet unmatched pairs. 33200 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr15:59,081,081
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 719297 as yet unmatched pairs. 30453 records in RAM.
INFO 2026-06-08 08:41:39 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr15:63,504,694
INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 716552 as yet unmatched pairs. 27682 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,468
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 713690 as yet unmatched pairs. 24798 records in RAM.
INFO 2026-06-08 08:41:42 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr15:72,202,476
INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 710681 as yet unmatched pairs. 21756 records in RAM.
INFO 2026-06-08 08:41:44 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,283
INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 707681 as yet unmatched pairs. 18744 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr15:75,210,865
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 704305 as yet unmatched pairs. 15351 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr15:78,886,159
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 701560 as yet unmatched pairs. 12577 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr15:84,512,624
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 699073 as yet unmatched pairs. 10067 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr15:89,327,217
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 696454 as yet unmatched pairs. 7414 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr15:90,228,305
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 693413 as yet unmatched pairs. 4361 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:98,916,724
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 690370 as yet unmatched pairs. 1295 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr16:547,546
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 687441 as yet unmatched pairs. 89774 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr16:1,584,304
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 683587 as yet unmatched pairs. 85893 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr16:2,108,341
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 679866 as yet unmatched pairs. 82165 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr16:2,762,182
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 676862 as yet unmatched pairs. 79147 records in RAM.
INFO 2026-06-08 08:42:02 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr16:2,769,039
INFO 2026-06-08 08:42:02 MarkDuplicates Tracking 674211 as yet unmatched pairs. 76464 records in RAM.
INFO 2026-06-08 08:42:04 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr16:3,731,341
INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 670184 as yet unmatched pairs. 72421 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr16:8,895,140
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 667188 as yet unmatched pairs. 69398 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr16:11,042,342
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 663977 as yet unmatched pairs. 66158 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr16:14,261,165
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 661063 as yet unmatched pairs. 63222 records in RAM.
INFO 2026-06-08 08:42:10 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr16:15,137,182
INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 659595 as yet unmatched pairs. 61748 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr16:16,350,361
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 658384 as yet unmatched pairs. 60530 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr16:18,394,666
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 657235 as yet unmatched pairs. 59380 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,255
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 655252 as yet unmatched pairs. 57375 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr16:21,894,717
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 654204 as yet unmatched pairs. 56308 records in RAM.
INFO 2026-06-08 08:42:16 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:23,635,111
INFO 2026-06-08 08:42:16 MarkDuplicates Tracking 652934 as yet unmatched pairs. 55026 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:28,592,091
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 650167 as yet unmatched pairs. 52241 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr16:29,383,938
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 648264 as yet unmatched pairs. 50327 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:29,816,837
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 646499 as yet unmatched pairs. 48555 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:30,195,186
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 643067 as yet unmatched pairs. 45106 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:30,709,629
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 641012 as yet unmatched pairs. 43048 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:31,180,178
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 638690 as yet unmatched pairs. 40696 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:48,244,409
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 635179 as yet unmatched pairs. 37178 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr16:56,609,007
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 648220 as yet unmatched pairs. 50189 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr16:57,651,442
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 628322 as yet unmatched pairs. 30279 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:67,146,275
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 625263 as yet unmatched pairs. 27199 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr16:67,940,262
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 621982 as yet unmatched pairs. 23906 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:69,757,598
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 618958 as yet unmatched pairs. 20876 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr16:71,920,809
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 616082 as yet unmatched pairs. 17984 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:75,451,760
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 613172 as yet unmatched pairs. 15055 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:84,981,936
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 609593 as yet unmatched pairs. 11450 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:88,534,438
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 606280 as yet unmatched pairs. 8107 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr16:88,808,157
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 602851 as yet unmatched pairs. 4667 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:89,775,791
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 599491 as yet unmatched pairs. 1295 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 3s. Last read position: chr17:1,467,330
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 596514 as yet unmatched pairs. 209401 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr17:2,680,265
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 593338 as yet unmatched pairs. 206216 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr17:4,771,991
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 590187 as yet unmatched pairs. 203057 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,732
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 587104 as yet unmatched pairs. 199957 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,055
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 584019 as yet unmatched pairs. 196866 records in RAM.
INFO 2026-06-08 08:42:56 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr17:7,930,462
INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 581164 as yet unmatched pairs. 194002 records in RAM.
INFO 2026-06-08 08:42:58 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr17:16,075,544
INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 578301 as yet unmatched pairs. 191122 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr17:17,820,137
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 575286 as yet unmatched pairs. 188093 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr17:21,021,204
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 572527 as yet unmatched pairs. 185310 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr17:28,689,419
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 569788 as yet unmatched pairs. 182557 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr17:30,291,378
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 566777 as yet unmatched pairs. 179539 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,624,452
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 564198 as yet unmatched pairs. 176935 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr17:36,511,389
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 561832 as yet unmatched pairs. 174567 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr17:38,352,492
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 560411 as yet unmatched pairs. 173135 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr17:38,720,711
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 558373 as yet unmatched pairs. 171094 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr17:38,852,688
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 553914 as yet unmatched pairs. 166622 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,150
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 552334 as yet unmatched pairs. 165031 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr17:39,708,338
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 547811 as yet unmatched pairs. 160489 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,103
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 559001 as yet unmatched pairs. 171673 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:39,710,444
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 542713 as yet unmatched pairs. 155372 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,766
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 543843 as yet unmatched pairs. 156489 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr17:39,716,584
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 548487 as yet unmatched pairs. 161132 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,563
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 539969 as yet unmatched pairs. 152613 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,739
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 534483 as yet unmatched pairs. 147122 records in RAM.
INFO 2026-06-08 08:43:28 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr17:39,727,453
INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 528803 as yet unmatched pairs. 141432 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:39,745,509
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 521667 as yet unmatched pairs. 134287 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:40,093,019
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 518616 as yet unmatched pairs. 131230 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr17:40,264,831
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 515403 as yet unmatched pairs. 128008 records in RAM.
INFO 2026-06-08 08:43:34 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:40,487,241
INFO 2026-06-08 08:43:34 MarkDuplicates Tracking 512698 as yet unmatched pairs. 125298 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,906
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 513506 as yet unmatched pairs. 126098 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:41,622,979
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 505344 as yet unmatched pairs. 117922 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr17:41,758,830
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 505078 as yet unmatched pairs. 117650 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:41,769,474
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 503016 as yet unmatched pairs. 115574 records in RAM.
INFO 2026-06-08 08:43:42 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr17:42,324,772
INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 495655 as yet unmatched pairs. 108207 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:43,769,683
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 492559 as yet unmatched pairs. 105106 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr17:45,081,696
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 489900 as yet unmatched pairs. 102438 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:45,404,043
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 486537 as yet unmatched pairs. 99063 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr17:46,067,630
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 483392 as yet unmatched pairs. 95900 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:47,941,675
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 481240 as yet unmatched pairs. 93739 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,456
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 481669 as yet unmatched pairs. 94161 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,698
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 479986 as yet unmatched pairs. 92467 records in RAM.
INFO 2026-06-08 08:43:54 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,499
INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 479453 as yet unmatched pairs. 91929 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,627
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 477877 as yet unmatched pairs. 90349 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,478
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 470783 as yet unmatched pairs. 83250 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,088
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 470855 as yet unmatched pairs. 83312 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,994
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 465213 as yet unmatched pairs. 77661 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,968
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 462440 as yet unmatched pairs. 74886 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,727
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 457312 as yet unmatched pairs. 69752 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,911
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 453630 as yet unmatched pairs. 66065 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,617
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 453468 as yet unmatched pairs. 65899 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,439
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 445067 as yet unmatched pairs. 57491 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 57s. Last read position: chr17:50,199,579
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 443783 as yet unmatched pairs. 56205 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 72s. Last read position: chr17:50,658,478
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 434971 as yet unmatched pairs. 47389 records in RAM.
INFO 2026-06-08 08:46:20 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 1s. Last read position: chr17:57,867,264
INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 431785 as yet unmatched pairs. 44191 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr17:59,693,719
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 429349 as yet unmatched pairs. 41741 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr17:63,818,150
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 426267 as yet unmatched pairs. 38640 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr17:67,875,678
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 423410 as yet unmatched pairs. 35765 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr17:74,748,975
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 420531 as yet unmatched pairs. 32873 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr17:75,563,414
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 417307 as yet unmatched pairs. 29641 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:75,831,131
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 413943 as yet unmatched pairs. 26261 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr17:76,629,573
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 410287 as yet unmatched pairs. 22584 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:78,806,166
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 406918 as yet unmatched pairs. 19204 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 1s. Last read position: chr17:80,288,037
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 404168 as yet unmatched pairs. 16436 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr17:80,371,909
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 400597 as yet unmatched pairs. 12855 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr17:81,559,359
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 397374 as yet unmatched pairs. 9616 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr17:81,899,920
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 393849 as yet unmatched pairs. 6079 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr17:82,236,024
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 390541 as yet unmatched pairs. 2764 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 2s. Last read position: chr18:2,945,566
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 386848 as yet unmatched pairs. 16273 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr18:13,057,646
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 383991 as yet unmatched pairs. 13399 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr18:31,932,343
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 380982 as yet unmatched pairs. 10373 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr18:49,937,262
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 378349 as yet unmatched pairs. 7721 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 2s. Last read position: chr18:58,920,302
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 375056 as yet unmatched pairs. 4410 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr18:76,442,762
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 371798 as yet unmatched pairs. 1136 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr19:1,010,577
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 368520 as yet unmatched pairs. 170114 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:1,432,581
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 364552 as yet unmatched pairs. 166140 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr19:2,253,780
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 360744 as yet unmatched pairs. 162322 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 2s. Last read position: chr19:4,117,451
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 357168 as yet unmatched pairs. 158740 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr19:5,711,856
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 353826 as yet unmatched pairs. 155394 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr19:7,468,832
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 350685 as yet unmatched pairs. 152250 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:10,091,606
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 347197 as yet unmatched pairs. 148761 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 2s. Last read position: chr19:10,921,085
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 343882 as yet unmatched pairs. 145439 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 2s. Last read position: chr19:12,705,376
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 340705 as yet unmatched pairs. 142256 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,588
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 337450 as yet unmatched pairs. 138989 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,399
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 334153 as yet unmatched pairs. 135686 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,409
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 332397 as yet unmatched pairs. 133927 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:16,521,610
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 327782 as yet unmatched pairs. 129306 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:17,581,293
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 324134 as yet unmatched pairs. 125640 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:18,431,672
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 320555 as yet unmatched pairs. 122041 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:19,264,833
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 316916 as yet unmatched pairs. 118399 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr19:33,207,481
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 313808 as yet unmatched pairs. 115278 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chr19:35,122,820
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 310978 as yet unmatched pairs. 112444 records in RAM.
INFO 2026-06-08 08:47:30 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chr19:35,720,308
INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 306407 as yet unmatched pairs. 107859 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 2s. Last read position: chr19:36,103,755
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 303439 as yet unmatched pairs. 104889 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:38,287,881
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 300049 as yet unmatched pairs. 101499 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,396
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 296698 as yet unmatched pairs. 98143 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 2s. Last read position: chr19:39,383,732
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 293920 as yet unmatched pairs. 95357 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr19:39,473,229
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 290485 as yet unmatched pairs. 91921 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr19:40,242,549
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 288947 as yet unmatched pairs. 90379 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr19:40,807,166
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 284143 as yet unmatched pairs. 85572 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr19:41,506,151
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 280762 as yet unmatched pairs. 82190 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr19:41,956,854
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 278242 as yet unmatched pairs. 79658 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:42,274,088
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 275505 as yet unmatched pairs. 76911 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,115
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 272258 as yet unmatched pairs. 73655 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:43,747,888
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 268392 as yet unmatched pairs. 69769 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr19:44,909,212
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 264911 as yet unmatched pairs. 66281 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:45,395,857
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 261086 as yet unmatched pairs. 62451 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 2s. Last read position: chr19:45,830,067
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 257722 as yet unmatched pairs. 59078 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:46,920,433
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 254244 as yet unmatched pairs. 55594 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr19:47,750,204
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 250591 as yet unmatched pairs. 51930 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,628,872
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 247163 as yet unmatched pairs. 48493 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr19:49,023,195
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 244214 as yet unmatched pairs. 45540 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr19:49,182,604
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 241896 as yet unmatched pairs. 43215 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr19:49,556,577
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 238458 as yet unmatched pairs. 39777 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr19:49,654,826
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 234999 as yet unmatched pairs. 36314 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:49,871,870
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 231755 as yet unmatched pairs. 33066 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr19:50,261,557
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 228423 as yet unmatched pairs. 29729 records in RAM.
INFO 2026-06-08 08:48:16 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 2s. Last read position: chr19:50,482,608
INFO 2026-06-08 08:48:16 MarkDuplicates Tracking 224145 as yet unmatched pairs. 25438 records in RAM.
INFO 2026-06-08 08:48:19 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 2s. Last read position: chr19:53,873,830
INFO 2026-06-08 08:48:19 MarkDuplicates Tracking 221422 as yet unmatched pairs. 22710 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr19:54,240,559
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 218355 as yet unmatched pairs. 19636 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:54,465,131
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 215794 as yet unmatched pairs. 17070 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr19:55,245,335
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 212118 as yet unmatched pairs. 13393 records in RAM.
INFO 2026-06-08 08:48:26 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 2s. Last read position: chr19:55,518,347
INFO 2026-06-08 08:48:26 MarkDuplicates Tracking 208396 as yet unmatched pairs. 9665 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:56,155,961
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 204611 as yet unmatched pairs. 5872 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:57,909,869
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 201986 as yet unmatched pairs. 3245 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:58,563,065
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 198983 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr20:3,693,523
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 195582 as yet unmatched pairs. 43356 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr20:17,624,627
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 192377 as yet unmatched pairs. 40145 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 2s. Last read position: chr20:23,635,338
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 189683 as yet unmatched pairs. 37449 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr20:32,436,621
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 186560 as yet unmatched pairs. 34322 records in RAM.
INFO 2026-06-08 08:48:41 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr20:34,923,296
INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 183354 as yet unmatched pairs. 31105 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr20:36,462,479
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 180352 as yet unmatched pairs. 28093 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr20:39,006,264
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 177058 as yet unmatched pairs. 24787 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr20:44,951,833
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 174047 as yet unmatched pairs. 21769 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr20:46,068,502
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 171011 as yet unmatched pairs. 18733 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,681
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 168268 as yet unmatched pairs. 15987 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr20:58,467,366
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 164871 as yet unmatched pairs. 12579 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr20:62,304,381
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 161185 as yet unmatched pairs. 8886 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr20:62,881,479
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 157602 as yet unmatched pairs. 5295 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr20:63,733,243
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 154106 as yet unmatched pairs. 1794 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr21:6,486,380
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 151636 as yet unmatched pairs. 30547 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,865
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 149618 as yet unmatched pairs. 28511 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,947
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 149190 as yet unmatched pairs. 28080 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr21:8,398,177
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 148519 as yet unmatched pairs. 27404 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,930
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 147448 as yet unmatched pairs. 26320 records in RAM.
INFO 2026-06-08 08:49:07 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,353
INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 145579 as yet unmatched pairs. 24450 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr21:25,975,181
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 144617 as yet unmatched pairs. 23487 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr21:33,546,208
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 141465 as yet unmatched pairs. 20334 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr21:36,232,827
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 137937 as yet unmatched pairs. 16801 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr21:41,449,227
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 134799 as yet unmatched pairs. 13662 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr21:43,416,858
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 132142 as yet unmatched pairs. 10999 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr21:44,771,478
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 129086 as yet unmatched pairs. 7942 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr21:46,002,696
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 125424 as yet unmatched pairs. 4271 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr21:46,430,565
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 122104 as yet unmatched pairs. 949 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 2s. Last read position: chr22:19,507,477
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 118832 as yet unmatched pairs. 56576 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr22:20,765,615
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 115411 as yet unmatched pairs. 53153 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr22:23,268,407
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 112484 as yet unmatched pairs. 50226 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr22:24,176,145
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 109371 as yet unmatched pairs. 47111 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr22:28,800,374
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 106317 as yet unmatched pairs. 44056 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,811
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 102774 as yet unmatched pairs. 40512 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr22:31,089,736
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 99781 as yet unmatched pairs. 37519 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr22:35,403,495
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 96737 as yet unmatched pairs. 34475 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr22:36,295,519
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 93417 as yet unmatched pairs. 31153 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr22:37,507,837
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 89832 as yet unmatched pairs. 27568 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr22:37,956,774
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 87061 as yet unmatched pairs. 24797 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr22:39,149,812
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 83536 as yet unmatched pairs. 21269 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr22:41,176,456
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 80655 as yet unmatched pairs. 18379 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr22:42,086,145
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 77565 as yet unmatched pairs. 15288 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr22:45,184,562
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 74496 as yet unmatched pairs. 12218 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr22:49,962,720
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 70823 as yet unmatched pairs. 8540 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr22:50,431,235
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 67326 as yet unmatched pairs. 5042 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr22:50,579,200
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 63557 as yet unmatched pairs. 1272 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chrX:3,343,738
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 60429 as yet unmatched pairs. 39012 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chrX:19,592,132
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 57319 as yet unmatched pairs. 35831 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chrX:40,663,135
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 54522 as yet unmatched pairs. 33031 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chrX:47,245,411
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 51687 as yet unmatched pairs. 30191 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chrX:49,038,301
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 48674 as yet unmatched pairs. 27178 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chrX:53,405,839
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 45786 as yet unmatched pairs. 24289 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chrX:64,191,545
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 42967 as yet unmatched pairs. 21470 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chrX:71,384,003
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 40234 as yet unmatched pairs. 18736 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chrX:85,271,692
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 37510 as yet unmatched pairs. 16011 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chrX:119,011,852
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 34971 as yet unmatched pairs. 13467 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chrX:136,874,139
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 32522 as yet unmatched pairs. 11017 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chrX:153,862,804
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 29401 as yet unmatched pairs. 7891 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,955
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 26325 as yet unmatched pairs. 4815 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chrX:154,468,919
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 22873 as yet unmatched pairs. 1362 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,150
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 20929 as yet unmatched pairs. 6148 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,565
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 15133 as yet unmatched pairs. 352 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,131
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 15145 as yet unmatched pairs. 364 records in RAM.
INFO 2026-06-08 08:50:19 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: GL000220.1:160,292
INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 14793 as yet unmatched pairs. 12 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 7395 as yet unmatched pairs. 7366 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,312
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1235 as yet unmatched pairs. 1206 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,120
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 188 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,734
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 33 as yet unmatched pairs. 4 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 655090979 records. 0 pairs never matched.
INFO 2026-06-08 08:51:25 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139304; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:51:25 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:51:33 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:51:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder Large duplicate set. size = 1803
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,383
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder Large duplicate set. size = 1200
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,580
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:51:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,997
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,411
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,661
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1622
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,263
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,978
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 2086
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,249
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,268
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,840
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,346
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,527
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,746
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,288
INFO 2026-06-08 08:51:47 OpticalDuplicateFinder Large duplicate set. size = 1627
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,241
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder Large duplicate set. size = 1891
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,368
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,373
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,133
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder Large duplicate set. size = 1351
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,944
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:51:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,971
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder Large duplicate set. size = 1150
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,114
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder Large duplicate set. size = 1550
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,736
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder Large duplicate set. size = 1975
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,302
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,711
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:51:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,315
INFO 2026-06-08 08:51:56 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 08:51:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,780
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,003
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,642
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 3196
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,081
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,539
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,171
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1524
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,939
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 2427
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,629
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,153
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,138
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 2182
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,688
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,241
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 3834
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,350
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,543
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,418
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,124
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,914
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,790
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,814
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1038
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,770
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1702
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,967
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1462
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,317
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,415
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,771
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:51:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,997
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,652
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder Large duplicate set. size = 3005
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,519
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,073
INFO 2026-06-08 08:52:03 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,076
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:52:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,981
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,458
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,877
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder Large duplicate set. size = 1317
INFO 2026-06-08 08:52:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,445
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1381
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1404
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,540
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,440
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1868
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,577
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 2261
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,393
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,139
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,603
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 2403
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,139
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,505
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 3026
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,218
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,132
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,909
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1382
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,205
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1745
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,970
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1406
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,375
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,404
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1600
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,276
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder Large duplicate set. size = 1610
INFO 2026-06-08 08:52:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,148
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder Large duplicate set. size = 1897
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,528
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder Large duplicate set. size = 1824
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,176
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,506
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder Large duplicate set. size = 1011
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,743
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 08:52:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,965
INFO 2026-06-08 08:52:34 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 08:52:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,083
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:52:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,438
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,675
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1360
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,958
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,967
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1699
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,484
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,497
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1371
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,811
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder Large duplicate set. size = 1213
INFO 2026-06-08 08:52:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,952
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,941
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1486
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,034
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,308
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,718
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1162
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,608
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,971
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,978
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1137
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,095
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,124
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,633
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1115
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,494
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1694
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,563
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1161
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,076
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1407
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,756
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,787
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 08:52:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,210
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1831
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,486
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 2668
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,536
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,171
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 3795
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,068
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,233
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,372
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,813
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,452
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,863
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1328
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,150
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,127
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,450
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,722
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1736
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,136
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 2568
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,561
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,583
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 2143
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,525
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,526
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,117
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1943
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,170
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,887
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,473
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1350
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,514
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,965
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,409
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,936
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 2610
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,550
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,956
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,225
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1272
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,230
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1259
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,243
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,939
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1246
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,348
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1379
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,778
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,053
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,937
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder Large duplicate set. size = 2131
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,057
INFO 2026-06-08 08:52:38 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,297
INFO 2026-06-08 08:52:39 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 08:52:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,624
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1140
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,370
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,901
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1495
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,478
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:53:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,979
INFO 2026-06-08 08:53:09 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:53:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:54:36 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:54:37 MarkDuplicates After generateDuplicateIndexes freeMemory: 203886544; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:54:37 MarkDuplicates Marking 296996286 records as duplicates.
INFO 2026-06-08 08:54:37 MarkDuplicates Found 6568709 optical duplicate clusters.
INFO 2026-06-08 08:54:37 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:54:55 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,279,283
INFO 2026-06-08 08:55:10 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:39,448,618
INFO 2026-06-08 08:55:25 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:47s. Time for last 10,000,000: 14s. Last read position: chr1:113,590,553
INFO 2026-06-08 08:55:40 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 14s. Last read position: chr1:154,207,569
INFO 2026-06-08 08:55:55 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 14s. Last read position: chr1:183,546,322
INFO 2026-06-08 08:56:09 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 14s. Last read position: chr2:1,649,354
INFO 2026-06-08 08:56:24 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,442
INFO 2026-06-08 08:56:39 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 14s. Last read position: chr2:100,974,892
INFO 2026-06-08 08:56:54 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 14s. Last read position: chr2:195,680,585
INFO 2026-06-08 08:57:08 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 14s. Last read position: chr2:215,408,180
INFO 2026-06-08 08:57:24 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:46s. Time for last 10,000,000: 15s. Last read position: chr3:4,673,265
INFO 2026-06-08 08:57:40 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 16s. Last read position: chr3:52,229,145
INFO 2026-06-08 08:57:55 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:17s. Time for last 10,000,000: 15s. Last read position: chr3:170,222,582
INFO 2026-06-08 08:58:10 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:32s. Time for last 10,000,000: 14s. Last read position: chr4:8,306,042
INFO 2026-06-08 08:58:25 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 14s. Last read position: chr5:225,500
INFO 2026-06-08 08:58:40 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 14s. Last read position: chr5:132,392,386
INFO 2026-06-08 08:58:55 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:17s. Time for last 10,000,000: 14s. Last read position: chr5:151,797,254
INFO 2026-06-08 08:59:10 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 15s. Last read position: chr6:26,184,098
INFO 2026-06-08 08:59:25 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:47s. Time for last 10,000,000: 14s. Last read position: chr6:33,006,434
INFO 2026-06-08 08:59:40 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 14s. Last read position: chr6:87,630,359
INFO 2026-06-08 08:59:55 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 15s. Last read position: chr7:1,474,322
INFO 2026-06-08 09:00:11 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 15s. Last read position: chr7:70,763,134
INFO 2026-06-08 09:00:28 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 17s. Last read position: chr7:100,960,387
INFO 2026-06-08 09:00:43 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 14s. Last read position: chr7:150,368,951
INFO 2026-06-08 09:00:58 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:20s. Time for last 10,000,000: 14s. Last read position: chr8:74,350,416
INFO 2026-06-08 09:01:12 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:34s. Time for last 10,000,000: 14s. Last read position: chr8:143,859,808
INFO 2026-06-08 09:01:27 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:49s. Time for last 10,000,000: 14s. Last read position: chr9:8,713,575
INFO 2026-06-08 09:01:42 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:04s. Time for last 10,000,000: 14s. Last read position: chr9:127,508,957
INFO 2026-06-08 09:01:57 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:19s. Time for last 10,000,000: 14s. Last read position: chr10:15,135,345
INFO 2026-06-08 09:02:12 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 15s. Last read position: chr10:96,602,342
INFO 2026-06-08 09:02:29 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 16s. Last read position: chr11:597,405
INFO 2026-06-08 09:02:47 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:09s. Time for last 10,000,000: 17s. Last read position: chr11:1,246,529
INFO 2026-06-08 09:03:03 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:26s. Time for last 10,000,000: 16s. Last read position: chr11:36,401,162
INFO 2026-06-08 09:03:19 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:41s. Time for last 10,000,000: 15s. Last read position: chr11:65,636,525
INFO 2026-06-08 09:03:34 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:56s. Time for last 10,000,000: 14s. Last read position: chr11:102,162,479
INFO 2026-06-08 09:03:54 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 20s. Last read position: chr12:7,070,237
INFO 2026-06-08 09:04:12 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 17s. Last read position: chr12:56,343,920
INFO 2026-06-08 09:04:28 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:50s. Time for last 10,000,000: 15s. Last read position: chr12:121,817,396
INFO 2026-06-08 09:04:43 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:06s. Time for last 10,000,000: 15s. Last read position: chr14:20,447,927
INFO 2026-06-08 09:04:59 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:21s. Time for last 10,000,000: 15s. Last read position: chr14:76,735,370
INFO 2026-06-08 09:05:20 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 20s. Last read position: chr14:105,854,992
INFO 2026-06-08 09:05:42 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:04s. Time for last 10,000,000: 21s. Last read position: chr15:63,504,694
INFO 2026-06-08 09:06:01 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 19s. Last read position: chr16:547,546
INFO 2026-06-08 09:06:24 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 22s. Last read position: chr16:16,350,361
INFO 2026-06-08 09:06:46 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 21s. Last read position: chr16:31,180,178
INFO 2026-06-08 09:07:06 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:29s. Time for last 10,000,000: 20s. Last read position: chr16:88,534,438
INFO 2026-06-08 09:07:22 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 15s. Last read position: chr17:17,820,137
INFO 2026-06-08 09:07:37 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:59s. Time for last 10,000,000: 15s. Last read position: chr17:39,708,338
INFO 2026-06-08 09:07:51 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:13s. Time for last 10,000,000: 14s. Last read position: chr17:40,264,831
INFO 2026-06-08 09:08:07 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:29s. Time for last 10,000,000: 16s. Last read position: chr17:46,067,630
INFO 2026-06-08 09:08:24 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:46s. Time for last 10,000,000: 16s. Last read position: chr17:50,194,727
INFO 2026-06-08 09:08:40 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 15s. Last read position: chr17:74,748,975
INFO 2026-06-08 09:08:56 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:18s. Time for last 10,000,000: 15s. Last read position: chr18:2,945,566
INFO 2026-06-08 09:09:12 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 15s. Last read position: chr19:5,711,856
INFO 2026-06-08 09:09:27 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 15s. Last read position: chr19:18,431,672
INFO 2026-06-08 09:09:41 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:03s. Time for last 10,000,000: 14s. Last read position: chr19:40,242,549
INFO 2026-06-08 09:09:56 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:18s. Time for last 10,000,000: 14s. Last read position: chr19:46,920,433
INFO 2026-06-08 09:10:10 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 14s. Last read position: chr19:53,873,830
INFO 2026-06-08 09:10:26 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 15s. Last read position: chr20:23,635,338
INFO 2026-06-08 09:10:42 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:04s. Time for last 10,000,000: 15s. Last read position: chr20:62,881,479
INFO 2026-06-08 09:10:57 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 15s. Last read position: chr21:36,232,827
INFO 2026-06-08 09:11:14 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 16s. Last read position: chr22:28,800,374
INFO 2026-06-08 09:11:31 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:53s. Time for last 10,000,000: 17s. Last read position: chr22:45,184,562
INFO 2026-06-08 09:11:48 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:10s. Time for last 10,000,000: 16s. Last read position: chrX:64,191,545
INFO 2026-06-08 09:12:04 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:17:27s. Time for last 10,000,000: 16s. Last read position: GL000220.1:158,131
INFO 2026-06-08 09:12:23 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:12:23 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:12:23 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:12:23 MarkDuplicates Before output close freeMemory: 203818952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:24 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:12:24 MarkDuplicates After output close freeMemory: 104079560; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:12:24 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.84 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory