Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/be8a4d08b3debc53836dda7bdcb162/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/817492269efae446b88efd9339a159/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/817492269efae446b88efd9339a159/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/bc7735c0e93a9e42134806843dccb3/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 135720688
[W::hts_idx_load3] The index file is older than the data file: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	135720688
Known Splicing Events:	134273619
Partial Novel Splicing Events:	622273
Novel Splicing Events:	774027
Filtered Splicing Events:	50769

Total splicing  Junctions:	407811
Known Splicing Junctions:	244937
Partial Novel Splicing Junctions:	95866
Novel Splicing Junctions:	67008

===================================================================
Create BED file ...
Create Interact file ...