.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/a0342035164f01c103a2791f95fca0/.command.sh
Size: 443 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION (1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
read_duplication.py \
    -i 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai \
    -o 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDUPLICATION":
    rseqc: $(read_duplication.py --version | sed -e "s/read_duplication.py //g")
END_VERSIONS