Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/e52dc9928879cb5534922a5a400d70/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/f8cf089fdcd3e56ad19416fa380266/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4e038a96bd34050e286ff0d63b8b7d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4e038a96bd34050e286ff0d63b8b7d/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 196025166
[W::hts_idx_load3] The index file is older than the data file: 1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	196025166
Known Splicing Events:	194730280
Partial Novel Splicing Events:	951721
Novel Splicing Events:	315419
Filtered Splicing Events:	27746

Total splicing  Junctions:	358217
Known Splicing Junctions:	236457
Partial Novel Splicing Junctions:	90524
Novel Splicing Junctions:	31236

===================================================================
Create BED file ...
Create Interact file ...