File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/db617a99e027aee41a3786a3c85491/.command.log
Size
2.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/2a887de1275449a4f46587a5df7a40/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/db617a99e027aee41a3786a3c85491/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/3f78b80191dcf3bc692b34f35411ed/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/db617a99e027aee41a3786a3c85491/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ITCH--PHF20
starfusion
SCX--MROH1
starfusion
PAN3--POLR1D
starfusion
arriba
INPP5A--AL596223.1
starfusion
TVP23C--CDRT4
arriba
HEATR5B--AC142381.4
arriba
B4GALT5--WFDC3
arriba

  0%|          | 0/7 [00:00<?, ?it/s]
Processing ITCH--PHF20:   0%|          | 0/7 [00:00<?, ?it/s]
Processing ITCH--PHF20:  14%|█▍        | 1/7 [00:00<00:00,  9.24it/s]
Processing SCX--MROH1:  14%|█▍        | 1/7 [00:00<00:00,  9.24it/s] 
Processing SCX--MROH1:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing PAN3--POLR1D:  29%|██▊       | 2/7 [00:00<00:00,  9.48it/s]
Processing PAN3--POLR1D:  43%|████▎     | 3/7 [00:00<00:00,  9.55it/s]
Processing INPP5A--AL596223.1:  43%|████▎     | 3/7 [00:00<00:00,  9.55it/s]
Processing INPP5A--AL596223.1:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 4/7 [00:00<00:00,  9.59it/s]     
Processing TVP23C--CDRT4:  71%|███████▏  | 5/7 [00:00<00:00,  9.61it/s]
Processing HEATR5B--AC142381.4:  71%|███████▏  | 5/7 [00:00<00:00,  9.61it/s]
Processing HEATR5B--AC142381.4:  86%|████████▌ | 6/7 [00:00<00:00,  9.62it/s]
Processing B4GALT5--WFDC3:  86%|████████▌ | 6/7 [00:00<00:00,  9.62it/s]     
Processing B4GALT5--WFDC3: 100%|██████████| 7/7 [00:00<00:00,  9.63it/s]
Processing B4GALT5--WFDC3: 100%|██████████| 7/7 [00:00<00:00,  9.58it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory