.command.out - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/4ad1d6afff0a304e3e44fd2b59eb1f/.command.out
Size: 343 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2: vaf_p90=0.998456 -> CONTAMINATED (~0.1%)

Output saved to: 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.predictions.csv
Summary: 1/1 samples flagged as contaminated