File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.log
Size
16.1 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/29192fbdc33beb3b0c144bffc31841/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
paired = 170482077
unpaired = 3652212
MERGED PAIRED END READS = 170482077
MATES PROCESSED = 344616366
TOTAL READS     = 174134289
DISTINCT READS  = 6.62959e+07
DISTINCT COUNTS = 906
MAX COUNT       = 790261
COUNTS OF 1     = 2.90956e+07
MAX TERMS       = 100
OBSERVED COUNTS (790262)
1	29095617
2	15769262
3	8716671
4	4818304
5	2717165
6	1595728
7	982662
8	637563
9	432480
10	305614
11	222476
12	166082
13	127808
14	99985
15	80330
16	64880
17	53250
18	44816
19	37303
20	31869
21	27221
22	23491
23	20552
24	17963
25	15849
26	14154
27	12575
28	11222
29	10142
30	9163
31	8213
32	7647
33	6770
34	6255
35	5745
36	5286
37	4955
38	4477
39	4097
40	3813
41	3518
42	3286
43	3051
44	2876
45	2747
46	2491
47	2423
48	2198
49	2137
50	1939
51	1881
52	1741
53	1603
54	1553
55	1507
56	1421
57	1336
58	1264
59	1157
60	1193
61	1046
62	1050
63	979
64	935
65	852
66	855
67	803
68	786
69	772
70	802
71	706
72	689
73	661
74	622
75	560
76	576
77	553
78	525
79	513
80	501
81	476
82	466
83	428
84	457
85	417
86	413
87	388
88	370
89	359
90	318
91	351
92	346
93	342
94	321
95	288
96	290
97	296
98	284
99	218
100	252
101	242
102	221
103	205
104	234
105	241
106	246
107	203
108	202
109	212
110	184
111	173
112	186
113	182
114	176
115	174
116	157
117	165
118	158
119	167
120	154
121	151
122	137
123	130
124	120
125	113
126	125
127	116
128	136
129	130
130	126
131	118
132	114
133	114
134	115
135	114
136	105
137	100
138	88
139	92
140	98
141	101
142	113
143	92
144	80
145	84
146	75
147	77
148	78
149	98
150	67
151	83
152	76
153	73
154	68
155	62
156	70
157	71
158	62
159	71
160	73
161	53
162	72
163	56
164	56
165	72
166	55
167	70
168	58
169	57
170	42
171	58
172	52
173	56
174	56
175	43
176	55
177	61
178	44
179	46
180	49
181	47
182	52
183	47
184	25
185	60
186	38
187	45
188	29
189	46
190	35
191	38
192	42
193	37
194	48
195	35
196	31
197	39
198	37
199	36
200	46
201	27
202	40
203	38
204	33
205	25
206	32
207	41
208	41
209	37
210	34
211	23
212	29
213	31
214	22
215	37
216	14
217	22
218	32
219	26
220	31
221	20
222	25
223	20
224	22
225	31
226	28
227	27
228	35
229	24
230	20
231	27
232	18
233	17
234	15
235	15
236	24
237	28
238	19
239	22
240	19
241	19
242	21
243	25
244	11
245	24
246	25
247	22
248	20
249	18
250	15
251	14
252	26
253	14
254	13
255	21
256	18
257	17
258	9
259	17
260	18
261	21
262	22
263	15
264	16
265	15
266	8
267	10
268	7
269	20
270	17
271	10
272	12
273	17
274	11
275	9
276	17
277	14
278	18
279	15
280	12
281	11
282	18
283	18
284	9
285	8
286	12
287	7
288	17
289	15
290	14
291	7
292	12
293	14
294	8
295	7
296	12
297	9
298	12
299	13
300	15
301	8
302	8
303	9
304	15
305	17
306	8
307	10
308	9
309	6
310	10
311	10
312	8
313	9
314	14
315	5
316	10
317	9
318	9
319	6
320	8
321	8
322	3
323	7
324	7
325	9
326	7
327	4
328	7
329	5
330	10
331	6
332	11
333	9
334	5
335	6
336	6
337	10
338	3
339	8
340	8
341	11
342	3
343	6
344	8
345	12
346	7
347	6
348	7
349	6
350	8
351	3
352	9
353	10
354	7
355	7
356	6
357	6
358	5
359	6
360	9
361	8
362	6
363	8
364	6
365	5
366	5
367	5
368	6
369	4
370	4
371	6
372	5
373	5
374	4
375	7
376	2
377	5
378	5
379	8
380	5
381	4
382	8
383	8
384	8
385	2
386	1
387	7
388	4
389	4
390	8
391	5
392	6
393	7
394	8
395	4
396	6
397	7
398	5
399	3
400	6
401	5
402	5
403	6
404	8
405	8
406	3
407	1
408	3
409	1
410	3
411	5
412	9
413	6
414	3
415	3
416	5
417	3
418	5
419	3
420	3
421	1
422	3
423	5
424	2
425	4
426	6
427	2
428	6
429	5
430	2
431	5
432	3
433	8
434	6
435	2
436	4
437	6
438	2
439	2
440	5
441	2
442	2
443	4
445	3
446	7
447	4
448	1
449	1
450	2
451	5
452	6
453	3
454	4
455	4
456	1
457	4
459	3
460	2
461	1
462	4
463	3
465	2
466	1
467	2
468	2
469	4
470	3
471	1
472	3
473	2
474	1
475	1
476	1
477	3
478	2
479	2
480	6
481	3
482	6
483	1
484	4
485	2
486	2
487	1
488	8
489	2
490	2
491	1
492	2
493	4
494	1
496	3
497	3
498	3
499	2
500	2
501	3
502	6
503	1
504	5
505	2
506	2
508	2
509	2
510	2
511	1
512	5
513	4
514	2
515	1
516	2
517	2
518	3
519	1
521	3
522	1
523	2
525	1
526	2
527	3
528	4
529	1
531	4
532	2
534	3
535	4
536	1
537	3
538	3
539	3
540	1
541	4
542	5
543	1
544	1
545	1
547	3
548	2
550	1
551	4
552	1
553	1
554	3
555	3
556	2
557	4
558	2
560	2
561	2
563	1
565	3
566	2
567	1
568	2
569	1
570	1
571	3
572	2
573	6
574	5
576	3
577	2
579	1
580	2
581	1
582	2
583	2
585	4
586	1
588	1
589	1
590	3
591	2
592	1
593	3
595	3
597	2
598	3
599	1
601	1
602	1
603	1
604	2
606	1
607	2
609	2
610	3
612	2
614	1
615	1
616	3
617	1
618	1
619	1
620	1
623	1
624	3
626	2
627	1
631	1
632	1
634	1
635	2
638	2
639	3
641	1
643	1
645	1
647	2
649	1
650	2
652	1
653	1
654	1
657	3
658	2
659	1
661	3
663	1
664	1
667	1
668	1
669	1
670	2
671	1
672	1
673	1
674	1
675	1
676	1
677	1
682	4
683	2
684	1
685	1
686	1
688	1
689	1
691	5
692	1
696	1
697	2
701	2
704	2
706	4
709	1
710	1
713	2
714	1
717	1
719	2
721	1
724	1
725	1
726	1
727	1
728	1
729	2
730	2
733	1
734	1
735	3
738	1
739	3
740	1
741	1
743	1
745	1
746	2
747	1
748	1
751	1
752	1
754	1
755	1
756	1
758	2
762	2
765	1
766	3
768	2
769	1
770	1
771	1
772	1
773	2
775	1
776	1
778	2
779	1
781	2
783	1
787	3
788	1
793	1
795	1
797	3
798	1
800	2
801	1
803	1
805	1
806	3
811	1
812	1
819	1
821	2
824	2
825	1
826	1
830	1
831	1
835	1
836	1
844	1
845	1
852	2
854	1
858	2
859	2
864	1
867	2
868	1
870	1
876	1
878	1
882	1
885	1
887	1
888	1
890	2
891	1
892	1
898	1
902	2
903	1
908	2
914	1
915	1
916	1
920	1
921	4
923	1
925	1
934	1
940	1
942	1
946	1
948	1
953	1
958	1
959	1
960	1
967	1
976	1
979	1
982	1
983	1
989	1
990	1
991	1
1011	1
1015	1
1026	1
1027	1
1029	1
1030	2
1031	1
1034	1
1037	2
1039	1
1047	2
1049	1
1052	1
1057	1
1068	1
1069	1
1081	1
1082	1
1084	1
1090	1
1091	1
1099	1
1117	1
1118	2
1120	1
1127	2
1128	1
1132	1
1138	1
1142	1
1146	1
1149	1
1150	1
1157	1
1161	1
1164	1
1166	1
1196	1
1203	1
1204	1
1206	1
1209	1
1213	2
1218	1
1221	1
1227	1
1230	1
1236	1
1250	1
1251	1
1255	1
1270	1
1272	1
1275	1
1281	1
1300	1
1306	1
1331	1
1336	1
1339	1
1342	1
1348	1
1349	1
1363	1
1371	1
1389	1
1390	1
1414	1
1420	1
1424	1
1439	1
1457	1
1479	2
1480	1
1486	1
1509	1
1512	1
1522	1
1537	1
1563	1
1569	1
1593	1
1625	1
1653	1
1658	1
1668	1
1676	1
1687	1
1693	1
1727	1
1738	1
1748	1
1753	1
1767	1
1770	1
1777	1
1782	1
1784	1
1813	1
1817	1
1819	1
1820	1
1829	1
1833	2
1852	1
1859	1
1865	1
1881	1
1890	1
1893	1
1911	1
1919	1
1932	1
1938	1
1957	1
1969	1
2003	1
2008	1
2052	1
2068	1
2113	1
2120	1
2168	1
2170	1
2210	1
2239	1
2280	1
2378	1
2412	1
2481	1
2523	1
2594	1
2791	1
2913	1
2931	1
2964	1
3430	1
3487	1
4827	1
4909	1
5044	1
11472	1
12086	1
38142	1
790261	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........_.._......................................................_.....
...............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]