Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/29192fbdc33beb3b0c144bffc31841/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 268000000 records
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Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
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Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
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Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
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Processed 332000000 records
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Processed 344000000 records
paired = 170482077
unpaired = 3652212
MERGED PAIRED END READS = 170482077
MATES PROCESSED = 344616366
TOTAL READS     = 174134289
DISTINCT READS  = 6.62959e+07
DISTINCT COUNTS = 906
MAX COUNT       = 790261
COUNTS OF 1     = 2.90956e+07
MAX TERMS       = 100
OBSERVED COUNTS (790262)
1	29095617
2	15769262
3	8716671
4	4818304
5	2717165
6	1595728
7	982662
8	637563
9	432480
10	305614
11	222476
12	166082
13	127808
14	99985
15	80330
16	64880
17	53250
18	44816
19	37303
20	31869
21	27221
22	23491
23	20552
24	17963
25	15849
26	14154
27	12575
28	11222
29	10142
30	9163
31	8213
32	7647
33	6770
34	6255
35	5745
36	5286
37	4955
38	4477
39	4097
40	3813
41	3518
42	3286
43	3051
44	2876
45	2747
46	2491
47	2423
48	2198
49	2137
50	1939
51	1881
52	1741
53	1603
54	1553
55	1507
56	1421
57	1336
58	1264
59	1157
60	1193
61	1046
62	1050
63	979
64	935
65	852
66	855
67	803
68	786
69	772
70	802
71	706
72	689
73	661
74	622
75	560
76	576
77	553
78	525
79	513
80	501
81	476
82	466
83	428
84	457
85	417
86	413
87	388
88	370
89	359
90	318
91	351
92	346
93	342
94	321
95	288
96	290
97	296
98	284
99	218
100	252
101	242
102	221
103	205
104	234
105	241
106	246
107	203
108	202
109	212
110	184
111	173
112	186
113	182
114	176
115	174
116	157
117	165
118	158
119	167
120	154
121	151
122	137
123	130
124	120
125	113
126	125
127	116
128	136
129	130
130	126
131	118
132	114
133	114
134	115
135	114
136	105
137	100
138	88
139	92
140	98
141	101
142	113
143	92
144	80
145	84
146	75
147	77
148	78
149	98
150	67
151	83
152	76
153	73
154	68
155	62
156	70
157	71
158	62
159	71
160	73
161	53
162	72
163	56
164	56
165	72
166	55
167	70
168	58
169	57
170	42
171	58
172	52
173	56
174	56
175	43
176	55
177	61
178	44
179	46
180	49
181	47
182	52
183	47
184	25
185	60
186	38
187	45
188	29
189	46
190	35
191	38
192	42
193	37
194	48
195	35
196	31
197	39
198	37
199	36
200	46
201	27
202	40
203	38
204	33
205	25
206	32
207	41
208	41
209	37
210	34
211	23
212	29
213	31
214	22
215	37
216	14
217	22
218	32
219	26
220	31
221	20
222	25
223	20
224	22
225	31
226	28
227	27
228	35
229	24
230	20
231	27
232	18
233	17
234	15
235	15
236	24
237	28
238	19
239	22
240	19
241	19
242	21
243	25
244	11
245	24
246	25
247	22
248	20
249	18
250	15
251	14
252	26
253	14
254	13
255	21
256	18
257	17
258	9
259	17
260	18
261	21
262	22
263	15
264	16
265	15
266	8
267	10
268	7
269	20
270	17
271	10
272	12
273	17
274	11
275	9
276	17
277	14
278	18
279	15
280	12
281	11
282	18
283	18
284	9
285	8
286	12
287	7
288	17
289	15
290	14
291	7
292	12
293	14
294	8
295	7
296	12
297	9
298	12
299	13
300	15
301	8
302	8
303	9
304	15
305	17
306	8
307	10
308	9
309	6
310	10
311	10
312	8
313	9
314	14
315	5
316	10
317	9
318	9
319	6
320	8
321	8
322	3
323	7
324	7
325	9
326	7
327	4
328	7
329	5
330	10
331	6
332	11
333	9
334	5
335	6
336	6
337	10
338	3
339	8
340	8
341	11
342	3
343	6
344	8
345	12
346	7
347	6
348	7
349	6
350	8
351	3
352	9
353	10
354	7
355	7
356	6
357	6
358	5
359	6
360	9
361	8
362	6
363	8
364	6
365	5
366	5
367	5
368	6
369	4
370	4
371	6
372	5
373	5
374	4
375	7
376	2
377	5
378	5
379	8
380	5
381	4
382	8
383	8
384	8
385	2
386	1
387	7
388	4
389	4
390	8
391	5
392	6
393	7
394	8
395	4
396	6
397	7
398	5
399	3
400	6
401	5
402	5
403	6
404	8
405	8
406	3
407	1
408	3
409	1
410	3
411	5
412	9
413	6
414	3
415	3
416	5
417	3
418	5
419	3
420	3
421	1
422	3
423	5
424	2
425	4
426	6
427	2
428	6
429	5
430	2
431	5
432	3
433	8
434	6
435	2
436	4
437	6
438	2
439	2
440	5
441	2
442	2
443	4
445	3
446	7
447	4
448	1
449	1
450	2
451	5
452	6
453	3
454	4
455	4
456	1
457	4
459	3
460	2
461	1
462	4
463	3
465	2
466	1
467	2
468	2
469	4
470	3
471	1
472	3
473	2
474	1
475	1
476	1
477	3
478	2
479	2
480	6
481	3
482	6
483	1
484	4
485	2
486	2
487	1
488	8
489	2
490	2
491	1
492	2
493	4
494	1
496	3
497	3
498	3
499	2
500	2
501	3
502	6
503	1
504	5
505	2
506	2
508	2
509	2
510	2
511	1
512	5
513	4
514	2
515	1
516	2
517	2
518	3
519	1
521	3
522	1
523	2
525	1
526	2
527	3
528	4
529	1
531	4
532	2
534	3
535	4
536	1
537	3
538	3
539	3
540	1
541	4
542	5
543	1
544	1
545	1
547	3
548	2
550	1
551	4
552	1
553	1
554	3
555	3
556	2
557	4
558	2
560	2
561	2
563	1
565	3
566	2
567	1
568	2
569	1
570	1
571	3
572	2
573	6
574	5
576	3
577	2
579	1
580	2
581	1
582	2
583	2
585	4
586	1
588	1
589	1
590	3
591	2
592	1
593	3
595	3
597	2
598	3
599	1
601	1
602	1
603	1
604	2
606	1
607	2
609	2
610	3
612	2
614	1
615	1
616	3
617	1
618	1
619	1
620	1
623	1
624	3
626	2
627	1
631	1
632	1
634	1
635	2
638	2
639	3
641	1
643	1
645	1
647	2
649	1
650	2
652	1
653	1
654	1
657	3
658	2
659	1
661	3
663	1
664	1
667	1
668	1
669	1
670	2
671	1
672	1
673	1
674	1
675	1
676	1
677	1
682	4
683	2
684	1
685	1
686	1
688	1
689	1
691	5
692	1
696	1
697	2
701	2
704	2
706	4
709	1
710	1
713	2
714	1
717	1
719	2
721	1
724	1
725	1
726	1
727	1
728	1
729	2
730	2
733	1
734	1
735	3
738	1
739	3
740	1
741	1
743	1
745	1
746	2
747	1
748	1
751	1
752	1
754	1
755	1
756	1
758	2
762	2
765	1
766	3
768	2
769	1
770	1
771	1
772	1
773	2
775	1
776	1
778	2
779	1
781	2
783	1
787	3
788	1
793	1
795	1
797	3
798	1
800	2
801	1
803	1
805	1
806	3
811	1
812	1
819	1
821	2
824	2
825	1
826	1
830	1
831	1
835	1
836	1
844	1
845	1
852	2
854	1
858	2
859	2
864	1
867	2
868	1
870	1
876	1
878	1
882	1
885	1
887	1
888	1
890	2
891	1
892	1
898	1
902	2
903	1
908	2
914	1
915	1
916	1
920	1
921	4
923	1
925	1
934	1
940	1
942	1
946	1
948	1
953	1
958	1
959	1
960	1
967	1
976	1
979	1
982	1
983	1
989	1
990	1
991	1
1011	1
1015	1
1026	1
1027	1
1029	1
1030	2
1031	1
1034	1
1037	2
1039	1
1047	2
1049	1
1052	1
1057	1
1068	1
1069	1
1081	1
1082	1
1084	1
1090	1
1091	1
1099	1
1117	1
1118	2
1120	1
1127	2
1128	1
1132	1
1138	1
1142	1
1146	1
1149	1
1150	1
1157	1
1161	1
1164	1
1166	1
1196	1
1203	1
1204	1
1206	1
1209	1
1213	2
1218	1
1221	1
1227	1
1230	1
1236	1
1250	1
1251	1
1255	1
1270	1
1272	1
1275	1
1281	1
1300	1
1306	1
1331	1
1336	1
1339	1
1342	1
1348	1
1349	1
1363	1
1371	1
1389	1
1390	1
1414	1
1420	1
1424	1
1439	1
1457	1
1479	2
1480	1
1486	1
1509	1
1512	1
1522	1
1537	1
1563	1
1569	1
1593	1
1625	1
1653	1
1658	1
1668	1
1676	1
1687	1
1693	1
1727	1
1738	1
1748	1
1753	1
1767	1
1770	1
1777	1
1782	1
1784	1
1813	1
1817	1
1819	1
1820	1
1829	1
1833	2
1852	1
1859	1
1865	1
1881	1
1890	1
1893	1
1911	1
1919	1
1932	1
1938	1
1957	1
1969	1
2003	1
2008	1
2052	1
2068	1
2113	1
2120	1
2168	1
2170	1
2210	1
2239	1
2280	1
2378	1
2412	1
2481	1
2523	1
2594	1
2791	1
2913	1
2931	1
2964	1
3430	1
3487	1
4827	1
4909	1
5044	1
11472	1
12086	1
38142	1
790261	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........_.._......................................................_.....
...............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]