Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/29192fbdc33beb3b0c144bffc31841/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d3c959e9e9aabf3584ed1b33661d78/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records paired = 170482077 unpaired = 3652212 MERGED PAIRED END READS = 170482077 MATES PROCESSED = 344616366 TOTAL READS = 174134289 DISTINCT READS = 6.62959e+07 DISTINCT COUNTS = 906 MAX COUNT = 790261 COUNTS OF 1 = 2.90956e+07 MAX TERMS = 100 OBSERVED COUNTS (790262) 1 29095617 2 15769262 3 8716671 4 4818304 5 2717165 6 1595728 7 982662 8 637563 9 432480 10 305614 11 222476 12 166082 13 127808 14 99985 15 80330 16 64880 17 53250 18 44816 19 37303 20 31869 21 27221 22 23491 23 20552 24 17963 25 15849 26 14154 27 12575 28 11222 29 10142 30 9163 31 8213 32 7647 33 6770 34 6255 35 5745 36 5286 37 4955 38 4477 39 4097 40 3813 41 3518 42 3286 43 3051 44 2876 45 2747 46 2491 47 2423 48 2198 49 2137 50 1939 51 1881 52 1741 53 1603 54 1553 55 1507 56 1421 57 1336 58 1264 59 1157 60 1193 61 1046 62 1050 63 979 64 935 65 852 66 855 67 803 68 786 69 772 70 802 71 706 72 689 73 661 74 622 75 560 76 576 77 553 78 525 79 513 80 501 81 476 82 466 83 428 84 457 85 417 86 413 87 388 88 370 89 359 90 318 91 351 92 346 93 342 94 321 95 288 96 290 97 296 98 284 99 218 100 252 101 242 102 221 103 205 104 234 105 241 106 246 107 203 108 202 109 212 110 184 111 173 112 186 113 182 114 176 115 174 116 157 117 165 118 158 119 167 120 154 121 151 122 137 123 130 124 120 125 113 126 125 127 116 128 136 129 130 130 126 131 118 132 114 133 114 134 115 135 114 136 105 137 100 138 88 139 92 140 98 141 101 142 113 143 92 144 80 145 84 146 75 147 77 148 78 149 98 150 67 151 83 152 76 153 73 154 68 155 62 156 70 157 71 158 62 159 71 160 73 161 53 162 72 163 56 164 56 165 72 166 55 167 70 168 58 169 57 170 42 171 58 172 52 173 56 174 56 175 43 176 55 177 61 178 44 179 46 180 49 181 47 182 52 183 47 184 25 185 60 186 38 187 45 188 29 189 46 190 35 191 38 192 42 193 37 194 48 195 35 196 31 197 39 198 37 199 36 200 46 201 27 202 40 203 38 204 33 205 25 206 32 207 41 208 41 209 37 210 34 211 23 212 29 213 31 214 22 215 37 216 14 217 22 218 32 219 26 220 31 221 20 222 25 223 20 224 22 225 31 226 28 227 27 228 35 229 24 230 20 231 27 232 18 233 17 234 15 235 15 236 24 237 28 238 19 239 22 240 19 241 19 242 21 243 25 244 11 245 24 246 25 247 22 248 20 249 18 250 15 251 14 252 26 253 14 254 13 255 21 256 18 257 17 258 9 259 17 260 18 261 21 262 22 263 15 264 16 265 15 266 8 267 10 268 7 269 20 270 17 271 10 272 12 273 17 274 11 275 9 276 17 277 14 278 18 279 15 280 12 281 11 282 18 283 18 284 9 285 8 286 12 287 7 288 17 289 15 290 14 291 7 292 12 293 14 294 8 295 7 296 12 297 9 298 12 299 13 300 15 301 8 302 8 303 9 304 15 305 17 306 8 307 10 308 9 309 6 310 10 311 10 312 8 313 9 314 14 315 5 316 10 317 9 318 9 319 6 320 8 321 8 322 3 323 7 324 7 325 9 326 7 327 4 328 7 329 5 330 10 331 6 332 11 333 9 334 5 335 6 336 6 337 10 338 3 339 8 340 8 341 11 342 3 343 6 344 8 345 12 346 7 347 6 348 7 349 6 350 8 351 3 352 9 353 10 354 7 355 7 356 6 357 6 358 5 359 6 360 9 361 8 362 6 363 8 364 6 365 5 366 5 367 5 368 6 369 4 370 4 371 6 372 5 373 5 374 4 375 7 376 2 377 5 378 5 379 8 380 5 381 4 382 8 383 8 384 8 385 2 386 1 387 7 388 4 389 4 390 8 391 5 392 6 393 7 394 8 395 4 396 6 397 7 398 5 399 3 400 6 401 5 402 5 403 6 404 8 405 8 406 3 407 1 408 3 409 1 410 3 411 5 412 9 413 6 414 3 415 3 416 5 417 3 418 5 419 3 420 3 421 1 422 3 423 5 424 2 425 4 426 6 427 2 428 6 429 5 430 2 431 5 432 3 433 8 434 6 435 2 436 4 437 6 438 2 439 2 440 5 441 2 442 2 443 4 445 3 446 7 447 4 448 1 449 1 450 2 451 5 452 6 453 3 454 4 455 4 456 1 457 4 459 3 460 2 461 1 462 4 463 3 465 2 466 1 467 2 468 2 469 4 470 3 471 1 472 3 473 2 474 1 475 1 476 1 477 3 478 2 479 2 480 6 481 3 482 6 483 1 484 4 485 2 486 2 487 1 488 8 489 2 490 2 491 1 492 2 493 4 494 1 496 3 497 3 498 3 499 2 500 2 501 3 502 6 503 1 504 5 505 2 506 2 508 2 509 2 510 2 511 1 512 5 513 4 514 2 515 1 516 2 517 2 518 3 519 1 521 3 522 1 523 2 525 1 526 2 527 3 528 4 529 1 531 4 532 2 534 3 535 4 536 1 537 3 538 3 539 3 540 1 541 4 542 5 543 1 544 1 545 1 547 3 548 2 550 1 551 4 552 1 553 1 554 3 555 3 556 2 557 4 558 2 560 2 561 2 563 1 565 3 566 2 567 1 568 2 569 1 570 1 571 3 572 2 573 6 574 5 576 3 577 2 579 1 580 2 581 1 582 2 583 2 585 4 586 1 588 1 589 1 590 3 591 2 592 1 593 3 595 3 597 2 598 3 599 1 601 1 602 1 603 1 604 2 606 1 607 2 609 2 610 3 612 2 614 1 615 1 616 3 617 1 618 1 619 1 620 1 623 1 624 3 626 2 627 1 631 1 632 1 634 1 635 2 638 2 639 3 641 1 643 1 645 1 647 2 649 1 650 2 652 1 653 1 654 1 657 3 658 2 659 1 661 3 663 1 664 1 667 1 668 1 669 1 670 2 671 1 672 1 673 1 674 1 675 1 676 1 677 1 682 4 683 2 684 1 685 1 686 1 688 1 689 1 691 5 692 1 696 1 697 2 701 2 704 2 706 4 709 1 710 1 713 2 714 1 717 1 719 2 721 1 724 1 725 1 726 1 727 1 728 1 729 2 730 2 733 1 734 1 735 3 738 1 739 3 740 1 741 1 743 1 745 1 746 2 747 1 748 1 751 1 752 1 754 1 755 1 756 1 758 2 762 2 765 1 766 3 768 2 769 1 770 1 771 1 772 1 773 2 775 1 776 1 778 2 779 1 781 2 783 1 787 3 788 1 793 1 795 1 797 3 798 1 800 2 801 1 803 1 805 1 806 3 811 1 812 1 819 1 821 2 824 2 825 1 826 1 830 1 831 1 835 1 836 1 844 1 845 1 852 2 854 1 858 2 859 2 864 1 867 2 868 1 870 1 876 1 878 1 882 1 885 1 887 1 888 1 890 2 891 1 892 1 898 1 902 2 903 1 908 2 914 1 915 1 916 1 920 1 921 4 923 1 925 1 934 1 940 1 942 1 946 1 948 1 953 1 958 1 959 1 960 1 967 1 976 1 979 1 982 1 983 1 989 1 990 1 991 1 1011 1 1015 1 1026 1 1027 1 1029 1 1030 2 1031 1 1034 1 1037 2 1039 1 1047 2 1049 1 1052 1 1057 1 1068 1 1069 1 1081 1 1082 1 1084 1 1090 1 1091 1 1099 1 1117 1 1118 2 1120 1 1127 2 1128 1 1132 1 1138 1 1142 1 1146 1 1149 1 1150 1 1157 1 1161 1 1164 1 1166 1 1196 1 1203 1 1204 1 1206 1 1209 1 1213 2 1218 1 1221 1 1227 1 1230 1 1236 1 1250 1 1251 1 1255 1 1270 1 1272 1 1275 1 1281 1 1300 1 1306 1 1331 1 1336 1 1339 1 1342 1 1348 1 1349 1 1363 1 1371 1 1389 1 1390 1 1414 1 1420 1 1424 1 1439 1 1457 1 1479 2 1480 1 1486 1 1509 1 1512 1 1522 1 1537 1 1563 1 1569 1 1593 1 1625 1 1653 1 1658 1 1668 1 1676 1 1687 1 1693 1 1727 1 1738 1 1748 1 1753 1 1767 1 1770 1 1777 1 1782 1 1784 1 1813 1 1817 1 1819 1 1820 1 1829 1 1833 2 1852 1 1859 1 1865 1 1881 1 1890 1 1893 1 1911 1 1919 1 1932 1 1938 1 1957 1 1969 1 2003 1 2008 1 2052 1 2068 1 2113 1 2120 1 2168 1 2170 1 2210 1 2239 1 2280 1 2378 1 2412 1 2481 1 2523 1 2594 1 2791 1 2913 1 2931 1 2964 1 3430 1 3487 1 4827 1 4909 1 5044 1 11472 1 12086 1 38142 1 790261 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ........_.._......................................................_..... ............................... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]