Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/be8a4d08b3debc53836dda7bdcb162/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/34bb0b26273a0787e5a5244f982e2c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/34bb0b26273a0787e5a5244f982e2c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/bc7735c0e93a9e42134806843dccb3/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (6783423) splicing reads. 204946 splicing junctions. 167881 known splicing junctions. 37065 novel splicing junctions.
sampling 10% (13566846) splicing reads. 242533 splicing junctions. 181078 known splicing junctions. 61455 novel splicing junctions.
sampling 15% (20350269) splicing reads. 269417 splicing junctions. 188550 known splicing junctions. 80867 novel splicing junctions.
sampling 20% (27133693) splicing reads. 290648 splicing junctions. 193575 known splicing junctions. 97073 novel splicing junctions.
sampling 25% (33917116) splicing reads. 308186 splicing junctions. 197158 known splicing junctions. 111028 novel splicing junctions.
sampling 30% (40700539) splicing reads. 323138 splicing junctions. 200090 known splicing junctions. 123048 novel splicing junctions.
sampling 35% (47483963) splicing reads. 336107 splicing junctions. 202376 known splicing junctions. 133731 novel splicing junctions.
sampling 40% (54267386) splicing reads. 347281 splicing junctions. 204218 known splicing junctions. 143063 novel splicing junctions.
sampling 45% (61050809) splicing reads. 357168 splicing junctions. 205751 known splicing junctions. 151417 novel splicing junctions.
sampling 50% (67834233) splicing reads. 365909 splicing junctions. 207107 known splicing junctions. 158802 novel splicing junctions.
sampling 55% (74617656) splicing reads. 373504 splicing junctions. 208202 known splicing junctions. 165302 novel splicing junctions.
sampling 60% (81401079) splicing reads. 380153 splicing junctions. 209147 known splicing junctions. 171006 novel splicing junctions.
sampling 65% (88184502) splicing reads. 386023 splicing junctions. 209961 known splicing junctions. 176062 novel splicing junctions.
sampling 70% (94967926) splicing reads. 391217 splicing junctions. 210669 known splicing junctions. 180548 novel splicing junctions.
sampling 75% (101751349) splicing reads. 395527 splicing junctions. 211294 known splicing junctions. 184233 novel splicing junctions.
sampling 80% (108534772) splicing reads. 399127 splicing junctions. 211773 known splicing junctions. 187354 novel splicing junctions.
sampling 85% (115318196) splicing reads. 402307 splicing junctions. 212197 known splicing junctions. 190110 novel splicing junctions.
sampling 90% (122101619) splicing reads. 404687 splicing junctions. 212499 known splicing junctions. 192188 novel splicing junctions.
sampling 95% (128885042) splicing reads. 406465 splicing junctions. 212716 known splicing junctions. 193749 novel splicing junctions.
sampling 100% (135668466) splicing reads. 407708 splicing junctions. 212903 known splicing junctions. 194805 novel splicing junctions.
null device 
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