Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/9d6b9f275e733bdbb5153f6649e4a7/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/c882a8f1f21130e7036c54c41c16ce/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/c882a8f1f21130e7036c54c41c16ce/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/13fda6e1d504cb505ecb43575babe2/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory