Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/0b22fe6c769c8c652d5c195a60bafb/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/af04cb95c2fab835c96b95402e6f7b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/af04cb95c2fab835c96b95402e6f7b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/495df7c7d87251a4ec09c1d610db54/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (13506903) splicing reads. 246360 splicing junctions. 182028 known splicing junctions. 64332 novel splicing junctions.
sampling 10% (27013806) splicing reads. 298526 splicing junctions. 195326 known splicing junctions. 103200 novel splicing junctions.
sampling 15% (40520710) splicing reads. 335896 splicing junctions. 202563 known splicing junctions. 133333 novel splicing junctions.
sampling 20% (54027613) splicing reads. 365485 splicing junctions. 207521 known splicing junctions. 157964 novel splicing junctions.
sampling 25% (67534517) splicing reads. 389902 splicing junctions. 211174 known splicing junctions. 178728 novel splicing junctions.
sampling 30% (81041420) splicing reads. 410865 splicing junctions. 213963 known splicing junctions. 196902 novel splicing junctions.
sampling 35% (94548323) splicing reads. 429023 splicing junctions. 216194 known splicing junctions. 212829 novel splicing junctions.
sampling 40% (108055227) splicing reads. 445016 splicing junctions. 218102 known splicing junctions. 226914 novel splicing junctions.
sampling 45% (121562130) splicing reads. 458810 splicing junctions. 219637 known splicing junctions. 239173 novel splicing junctions.
sampling 50% (135069034) splicing reads. 470973 splicing junctions. 220941 known splicing junctions. 250032 novel splicing junctions.
sampling 55% (148575937) splicing reads. 481719 splicing junctions. 222043 known splicing junctions. 259676 novel splicing junctions.
sampling 60% (162082840) splicing reads. 491187 splicing junctions. 222996 known splicing junctions. 268191 novel splicing junctions.
sampling 65% (175589744) splicing reads. 499582 splicing junctions. 223744 known splicing junctions. 275838 novel splicing junctions.
sampling 70% (189096647) splicing reads. 506917 splicing junctions. 224454 known splicing junctions. 282463 novel splicing junctions.
sampling 75% (202603551) splicing reads. 513151 splicing junctions. 225030 known splicing junctions. 288121 novel splicing junctions.
sampling 80% (216110454) splicing reads. 518469 splicing junctions. 225482 known splicing junctions. 292987 novel splicing junctions.
sampling 85% (229617357) splicing reads. 522966 splicing junctions. 225886 known splicing junctions. 297080 novel splicing junctions.
sampling 90% (243124261) splicing reads. 526688 splicing junctions. 226213 known splicing junctions. 300475 novel splicing junctions.
sampling 95% (256631164) splicing reads. 529477 splicing junctions. 226488 known splicing junctions. 302989 novel splicing junctions.
sampling 100% (270138068) splicing reads. 531496 splicing junctions. 226689 known splicing junctions. 304807 novel splicing junctions.
null device 
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