File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/2f5f01907f54ef0ca6a3a2b88694e7/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:52:52
                             Started mapping on |	Jun 08 10:59:29
                                    Finished on |	Jun 08 11:56:01
       Mapping speed, Million of reads per hour |	312.40

                          Number of input reads |	294354607
                      Average input read length |	226
                                    UNIQUE READS:
                   Uniquely mapped reads number |	280988446
                        Uniquely mapped reads % |	95.46%
                          Average mapped length |	225.22
                       Number of splices: Total |	250971644
            Number of splices: Annotated (sjdb) |	247339757
                       Number of splices: GT/AG |	248364568
                       Number of splices: GC/AG |	1617767
                       Number of splices: AT/AC |	177593
               Number of splices: Non-canonical |	811716
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.90
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.75
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8657988
             % of reads mapped to multiple loci |	2.94%
        Number of reads mapped to too many loci |	411713
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3609549
                 % of reads unmapped: too short |	1.23%
                Number of reads unmapped: other |	686911
                     % of reads unmapped: other |	0.23%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%