File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/7e91110a6897d1f0e8887cc3f5f092/.command.log
Size
10.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_9C_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/884e12b5b276973df011bd0229c1fc/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/7e91110a6897d1f0e8887cc3f5f092/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/7e91110a6897d1f0e8887cc3f5f092/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/f4149e16eafc2d2cd72ce7c92d0df6/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
KRT19--TEKT5
starfusion
arriba
ERBB2--JUP
starfusion
JUP--TVP23A
starfusion
arriba
LASP1--KRT16
starfusion
arriba
GRB7--KRT16
starfusion
WIPF2--KRT9
starfusion
arriba
ERBB2--CWC25
starfusion
GRIN2A--JUP
starfusion
ZC3H7A--GRIN2A
starfusion
arriba
TRIO--CACNA1C
starfusion
TLK2P1--AC110079.1
starfusion
YAP1--CEP126
starfusion
SRGAP2B--MAN2A1
starfusion
arriba
C16orf72--AC022168.1
starfusion
arriba
ABR--AC007846.1
starfusion
arriba
KIRREL1--AL139010.1
starfusion
TXNDC11--CIITA
starfusion
BATF2--HPS3
starfusion
arriba
TMEM123--SLC7A14-AS1
starfusion
NEB--SLC7A14-AS1
starfusion
arriba
PGAP3--KRT32
starfusion
KIRREL1--CFAP300
starfusion
KIAA0100--HNF1B
starfusion
CASC3--KRT15
starfusion
HNF1B--SPOP
starfusion
WWTR1--PACS1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
FMNL1--AC130686.1
arriba
FMNL1--EIF1
arriba
TVP23C--CDRT4
arriba
CPNE4--ACP3
arriba
ACP3--ACP3
arriba
TOP2A--EMP2
arriba
GRIN2A--AC012178.1
arriba
SLC35F2--SLC35F2
arriba
SRGAP2B--KRT18P42
arriba
SRGAP2B--MAN2A1-DT
arriba
DYNC2H1--MIR3976HG
arriba
PACS1--LINC02054
arriba

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Processing KRT19--TEKT5:   0%|          | 0/48 [00:00<?, ?it/s]
Processing KRT19--TEKT5:   2%|▏         | 1/48 [00:00<00:05,  9.24it/s]
Processing ERBB2--JUP:   2%|▏         | 1/48 [00:00<00:05,  9.24it/s]  
Processing ERBB2--JUP:   4%|▍         | 2/48 [00:00<00:04,  9.47it/s]
Processing JUP--TVP23A:   4%|▍         | 2/48 [00:00<00:04,  9.47it/s]
Processing JUP--TVP23A:   6%|▋         | 3/48 [00:00<00:04,  9.55it/s]
Processing LASP1--KRT16:   6%|▋         | 3/48 [00:00<00:04,  9.55it/s]
Processing LASP1--KRT16:   8%|▊         | 4/48 [00:00<00:04,  9.59it/s]
Processing GRB7--KRT16:   8%|▊         | 4/48 [00:00<00:04,  9.59it/s] 
Processing GRB7--KRT16:  10%|█         | 5/48 [00:00<00:04,  9.61it/s]
Processing WIPF2--KRT9:  10%|█         | 5/48 [00:00<00:04,  9.61it/s]
Processing WIPF2--KRT9:  12%|█▎        | 6/48 [00:00<00:04,  9.63it/s]
Processing ERBB2--CWC25:  12%|█▎        | 6/48 [00:00<00:04,  9.63it/s]
Processing ERBB2--CWC25:  15%|█▍        | 7/48 [00:00<00:04,  9.64it/s]
Processing GRIN2A--JUP:  15%|█▍        | 7/48 [00:00<00:04,  9.64it/s] 
Processing GRIN2A--JUP:  17%|█▋        | 8/48 [00:00<00:04,  9.64it/s]
Processing ZC3H7A--GRIN2A:  17%|█▋        | 8/48 [00:00<00:04,  9.64it/s]
Processing ZC3H7A--GRIN2A:  19%|█▉        | 9/48 [00:00<00:04,  9.64it/s]
Processing TRIO--CACNA1C:  19%|█▉        | 9/48 [00:00<00:04,  9.64it/s] 
Processing TRIO--CACNA1C:  21%|██        | 10/48 [00:01<00:03,  9.65it/s]
Processing TLK2P1--AC110079.1:  21%|██        | 10/48 [00:01<00:03,  9.65it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 11/48 [00:01<00:03,  9.65it/s]
Processing YAP1--CEP126:  23%|██▎       | 11/48 [00:01<00:03,  9.65it/s]      
Processing YAP1--CEP126:  25%|██▌       | 12/48 [00:01<00:03,  9.65it/s]
Processing SRGAP2B--MAN2A1:  25%|██▌       | 12/48 [00:01<00:03,  9.65it/s]
Processing SRGAP2B--MAN2A1:  27%|██▋       | 13/48 [00:01<00:03,  9.65it/s]
Processing C16orf72--AC022168.1:  27%|██▋       | 13/48 [00:01<00:03,  9.65it/s]
Processing C16orf72--AC022168.1:  29%|██▉       | 14/48 [00:01<00:03,  9.65it/s]
Processing ABR--AC007846.1:  29%|██▉       | 14/48 [00:01<00:03,  9.65it/s]     
Processing ABR--AC007846.1:  31%|███▏      | 15/48 [00:01<00:03,  9.65it/s]
Processing KIRREL1--AL139010.1:  31%|███▏      | 15/48 [00:01<00:03,  9.65it/s]
Processing KIRREL1--AL139010.1:  33%|███▎      | 16/48 [00:01<00:03,  9.65it/s]
Processing TXNDC11--CIITA:  33%|███▎      | 16/48 [00:01<00:03,  9.65it/s]     
Processing TXNDC11--CIITA:  35%|███▌      | 17/48 [00:01<00:03,  9.65it/s]
Processing BATF2--HPS3:  35%|███▌      | 17/48 [00:01<00:03,  9.65it/s]   
Processing BATF2--HPS3:  38%|███▊      | 18/48 [00:01<00:03,  9.65it/s]
Processing TMEM123--SLC7A14-AS1:  38%|███▊      | 18/48 [00:01<00:03,  9.65it/s]
Processing TMEM123--SLC7A14-AS1:  40%|███▉      | 19/48 [00:01<00:03,  9.65it/s]
Processing NEB--SLC7A14-AS1:  40%|███▉      | 19/48 [00:01<00:03,  9.65it/s]    
Processing NEB--SLC7A14-AS1:  42%|████▏     | 20/48 [00:02<00:02,  9.65it/s]
Processing PGAP3--KRT32:  42%|████▏     | 20/48 [00:02<00:02,  9.65it/s]    
Processing PGAP3--KRT32:  44%|████▍     | 21/48 [00:02<00:02,  9.65it/s]
Processing KIRREL1--CFAP300:  44%|████▍     | 21/48 [00:02<00:02,  9.65it/s]
Processing KIRREL1--CFAP300:  46%|████▌     | 22/48 [00:02<00:02,  9.65it/s]
Processing KIAA0100--HNF1B:  46%|████▌     | 22/48 [00:02<00:02,  9.65it/s] 
Processing KIAA0100--HNF1B:  48%|████▊     | 23/48 [00:02<00:02,  9.65it/s]
Processing CASC3--KRT15:  48%|████▊     | 23/48 [00:02<00:02,  9.65it/s]   
Processing CASC3--KRT15:  50%|█████     | 24/48 [00:02<00:02,  9.65it/s]
Processing HNF1B--SPOP:  50%|█████     | 24/48 [00:02<00:02,  9.65it/s] 
Processing HNF1B--SPOP:  52%|█████▏    | 25/48 [00:02<00:02,  9.65it/s]
Processing WWTR1--PACS1:  52%|█████▏    | 25/48 [00:02<00:02,  9.65it/s]
Processing WWTR1--PACS1:  54%|█████▍    | 26/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  54%|█████▍    | 26/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGA8:  56%|█████▋    | 27/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  56%|█████▋    | 27/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGC5:  58%|█████▊    | 28/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  58%|█████▊    | 28/48 [00:02<00:02,  9.65it/s]
Processing PCDHGB2--PCDHGB6:  60%|██████    | 29/48 [00:03<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGC4:  60%|██████    | 29/48 [00:03<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGC4:  62%|██████▎   | 30/48 [00:03<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGB7:  62%|██████▎   | 30/48 [00:03<00:01,  9.66it/s]
Processing PCDHGB2--PCDHGB7:  65%|██████▍   | 31/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  65%|██████▍   | 31/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA11:  67%|██████▋   | 32/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  67%|██████▋   | 32/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA10:  69%|██████▉   | 33/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  69%|██████▉   | 33/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA12:  71%|███████   | 34/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGA9:  71%|███████   | 34/48 [00:03<00:01,  9.65it/s] 
Processing PCDHGB2--PCDHGA9:  73%|███████▎  | 35/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  73%|███████▎  | 35/48 [00:03<00:01,  9.65it/s]
Processing PCDHGB2--PCDHGC3:  75%|███████▌  | 36/48 [00:03<00:01,  9.65it/s]
Processing FMNL1--AC130686.1:  75%|███████▌  | 36/48 [00:03<00:01,  9.65it/s]
Processing FMNL1--AC130686.1:  77%|███████▋  | 37/48 [00:03<00:01,  9.65it/s]
Processing FMNL1--EIF1:  77%|███████▋  | 37/48 [00:03<00:01,  9.65it/s]      
Processing FMNL1--EIF1:  79%|███████▉  | 38/48 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  79%|███████▉  | 38/48 [00:03<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  81%|████████▏ | 39/48 [00:04<00:00,  9.65it/s]
Processing CPNE4--ACP3:  81%|████████▏ | 39/48 [00:04<00:00,  9.65it/s]  
Processing CPNE4--ACP3:  83%|████████▎ | 40/48 [00:04<00:00,  9.65it/s]
Processing ACP3--ACP3:  83%|████████▎ | 40/48 [00:04<00:00,  9.65it/s] 
Processing ACP3--ACP3:  85%|████████▌ | 41/48 [00:04<00:00,  9.65it/s]
Processing TOP2A--EMP2:  85%|████████▌ | 41/48 [00:04<00:00,  9.65it/s]
Processing TOP2A--EMP2:  88%|████████▊ | 42/48 [00:04<00:00,  9.65it/s]
Processing GRIN2A--AC012178.1:  88%|████████▊ | 42/48 [00:04<00:00,  9.65it/s]
Processing GRIN2A--AC012178.1:  90%|████████▉ | 43/48 [00:04<00:00,  9.65it/s]
Processing SLC35F2--SLC35F2:  90%|████████▉ | 43/48 [00:04<00:00,  9.65it/s]  
Processing SLC35F2--SLC35F2:  92%|█████████▏| 44/48 [00:04<00:00,  9.65it/s]
Processing SRGAP2B--KRT18P42:  92%|█████████▏| 44/48 [00:04<00:00,  9.65it/s]
Processing SRGAP2B--KRT18P42:  94%|█████████▍| 45/48 [00:04<00:00,  9.65it/s]
Processing SRGAP2B--MAN2A1-DT:  94%|█████████▍| 45/48 [00:04<00:00,  9.65it/s]
Processing SRGAP2B--MAN2A1-DT:  96%|█████████▌| 46/48 [00:04<00:00,  9.65it/s]
Processing DYNC2H1--MIR3976HG:  96%|█████████▌| 46/48 [00:04<00:00,  9.65it/s]
Processing DYNC2H1--MIR3976HG:  98%|█████████▊| 47/48 [00:04<00:00,  9.65it/s]
Processing PACS1--LINC02054:  98%|█████████▊| 47/48 [00:04<00:00,  9.65it/s]  
Processing PACS1--LINC02054: 100%|██████████| 48/48 [00:04<00:00,  9.65it/s]
Processing PACS1--LINC02054: 100%|██████████| 48/48 [00:04<00:00,  9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory