File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/684dc0edf597af2be4c1bab12bc91d/.command.log
Size
744 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_FM_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/6e63fbfb4086fca71c91e4b9614b76/1173_FM_T1_RNA_SLD_01_A23T55JLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/684dc0edf597af2be4c1bab12bc91d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/684dc0edf597af2be4c1bab12bc91d/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_FM_T1_RNA_SLD_01_A23T55JLT4_1: vaf_p90=0.999758 -> CONTAMINATED (~0.0%)

Output saved to: 1173_FM_T1_RNA_SLD_01_A23T55JLT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated