|
|
.command.begin
|
6 bytes |
Jun 08, 2026 1:47 AM |
|
|
.command.err
|
12.0 KB |
Jun 08, 2026 2:20 AM |
|
|
.command.log
|
47.3 KB |
Jun 08, 2026 2:20 AM |
|
|
.command.out
|
34.5 KB |
Jun 08, 2026 2:20 AM |
|
|
.command.run
|
14.4 KB |
Jun 08, 2026 1:47 AM |
|
|
.command.sh
|
678 bytes |
Jun 08, 2026 1:47 AM |
|
|
.command.trace
|
295 bytes |
Jun 08, 2026 2:20 AM |
|
|
.command.yaml
|
3.8 KB |
Jun 08, 2026 1:47 AM |
|
|
.exitcode
|
1 byte |
Jun 08, 2026 2:20 AM |
|
|
1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.FusionInspector.fusions.abridged.tsv
|
2.1 KB |
Jun 08, 2026 2:20 AM |
|
|
1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
|
42.0 KB |
Jun 08, 2026 2:20 AM |
|
|
1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.FusionInspector.fusions.tsv
|
219.2 KB |
Jun 08, 2026 2:20 AM |
|
|
1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_inspector_web.html
|
197.4 KB |
Jun 08, 2026 2:20 AM |
|
|
FusionInspector.log
|
44.3 KB |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.bed.bedsort.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.bed.bgzip.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.bed.tabix.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.junction_reads.bam.bam_to_bed.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.junction_reads.bam.bedsort.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.junction_reads.bam.bgzip.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.junction_reads.bam.tabix.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.spanning_reads.bam.bam_to_bed.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.spanning_reads.bam.bedsort.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.spanning_reads.bam.bgzip.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.spanning_reads.bam.tabix.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/EM_adj_counts.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/add_FFPM.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/add_splice_info.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/annot_filter.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/append_microH_info.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/blast_filter.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/coalesce_junc_n_span.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/cp_consol_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/cp_contigs_file_workdir
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/cp_final.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/cp_gtf_file_workdir.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/create_fi_igvjs.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/cytoband.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/filter_by_frag_threshs.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/final.abridged.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/fusion_annotator.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/fusion_coding_region_effect.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/fusion_contigs.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/fusion_reports_html.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/index_consol_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/init_EM_adj_counts.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/init_spanning_reads_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/mark_dup_reads.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/mark_dups_reads.index.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/merged_contig_fai.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/merged_contig_gtf_to_bed.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/microH.dat.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_extract_junc_reads.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_junc_reads_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_juncspan_fmt.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_pfam_bed.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_pfam_gff3.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_sam_frag_coordss.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_seqsim_bed.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_igv_seqsim_gff3.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/prep_spanning_reads.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/run_STAR.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/samtools_idx_junc_reads_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/samtools_index_span_reads_bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
chckpts_dir/span_reads_acc.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fa
|
211.9 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary
|
324.8 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj
|
324.9 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
|
218.8 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
|
219.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter
|
219.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.info
|
219.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter
|
219.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter.info
|
219.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.fusion_junction_read_accs
|
67.1 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.fusion_preds.coalesced.summary.fusion_spanning_read_accs
|
787 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.gtf
|
598.3 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam
|
14.6 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.bai
|
3.6 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.failed_reads_during_span_analysis
|
836.0 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
|
659.0 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.fusion_junction_info
|
68.3 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info
|
257.9 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.read_align_counts.idx
|
27.1 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.read_align_counts.idx.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.cSorted.dupsMarked.bam.spanning_reads_want.idx
|
8.0 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam
|
20.1 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam.bai
|
3.6 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam.bai.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.star.sortedByCoord.out.bam.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/Log.final.out
|
2.0 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/Log.out
|
20.8 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/Log.progress.out
|
2.5 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/SJ.out.tab
|
12.1 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/exonGeTrInfo.tab
|
18.4 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/exonInfo.tab
|
9.2 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/geneInfo.tab
|
787 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/sjdbInfo.txt
|
10.8 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/sjdbList.fromGTF.out.tab
|
5.0 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/sjdbList.out.tab
|
9.5 MB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/_STARgenome/transcriptInfo.tab
|
5.7 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/microH.dat
|
21.2 KB |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/pipeliner.1154.cmds
|
1011 bytes |
Jun 08, 2026 2:20 AM |
|
|
fi_workdir/star_align.ok
|
0 bytes |
Jun 08, 2026 2:20 AM |
|
|
versions.yml
|
103 bytes |
Jun 08, 2026 2:20 AM |