AIH curated blacklist: matched 8 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 131
Pass (FILTER=PASS): 19 (14.5%)
Fail (FILTER=FAIL): 112 (85.5%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 8
All 8 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 14
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 12
confidence_below_min(medium<high): 11
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 11
confidence_below_min(low<high): 8
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 7
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 3
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
aih_curated_blacklist: 1
total_reads_below_min(6.0<8.0): 1
Breakdown by confidence:
high: 19 pass, 3 fail (total: 22)
low: 0 pass, 82 fail (total: 82)
medium: 0 pass, 27 fail (total: 27)
Arriba filter: 131 rows -> 19 PASS; wrote FFPE_V4_0002_RNA_0001_A23T55JLT4_1.arriba.fusions.filtered.tsv and FFPE_V4_0002_RNA_0001_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_V4_0002_RNA_0001_A23T55JLT4_1.arriba.fusions.filter_summary.txt