Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ad00d91b871c77c26e40f9a6b6b84d/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/19eef577f62ce6239865ff3b18d572/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/19eef577f62ce6239865ff3b18d572/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9b2a39216732e94a63b9c756b6e117/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (12213862) splicing reads. 222934 splicing junctions. 173261 known splicing junctions. 49673 novel splicing junctions.
sampling 10% (24427725) splicing reads. 257814 splicing junctions. 183753 known splicing junctions. 74061 novel splicing junctions.
sampling 15% (36641588) splicing reads. 278545 splicing junctions. 188714 known splicing junctions. 89831 novel splicing junctions.
sampling 20% (48855451) splicing reads. 292708 splicing junctions. 191787 known splicing junctions. 100921 novel splicing junctions.
sampling 25% (61069314) splicing reads. 302874 splicing junctions. 193847 known splicing junctions. 109027 novel splicing junctions.
sampling 30% (73283176) splicing reads. 310582 splicing junctions. 195339 known splicing junctions. 115243 novel splicing junctions.
sampling 35% (85497039) splicing reads. 316629 splicing junctions. 196410 known splicing junctions. 120219 novel splicing junctions.
sampling 40% (97710902) splicing reads. 321632 splicing junctions. 197263 known splicing junctions. 124369 novel splicing junctions.
sampling 45% (109924765) splicing reads. 325736 splicing junctions. 197942 known splicing junctions. 127794 novel splicing junctions.
sampling 50% (122138628) splicing reads. 328983 splicing junctions. 198479 known splicing junctions. 130504 novel splicing junctions.
sampling 55% (134352490) splicing reads. 331717 splicing junctions. 198925 known splicing junctions. 132792 novel splicing junctions.
sampling 60% (146566353) splicing reads. 334051 splicing junctions. 199282 known splicing junctions. 134769 novel splicing junctions.
sampling 65% (158780216) splicing reads. 336014 splicing junctions. 199554 known splicing junctions. 136460 novel splicing junctions.
sampling 70% (170994079) splicing reads. 337593 splicing junctions. 199798 known splicing junctions. 137795 novel splicing junctions.
sampling 75% (183207942) splicing reads. 338908 splicing junctions. 199981 known splicing junctions. 138927 novel splicing junctions.
sampling 80% (195421804) splicing reads. 340017 splicing junctions. 200153 known splicing junctions. 139864 novel splicing junctions.
sampling 85% (207635667) splicing reads. 340859 splicing junctions. 200265 known splicing junctions. 140594 novel splicing junctions.
sampling 90% (219849530) splicing reads. 341504 splicing junctions. 200360 known splicing junctions. 141144 novel splicing junctions.
sampling 95% (232063393) splicing reads. 341938 splicing junctions. 200436 known splicing junctions. 141502 novel splicing junctions.
sampling 100% (244277256) splicing reads. 342180 splicing junctions. 200473 known splicing junctions. 141707 novel splicing junctions.
null device 
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