Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/0b22fe6c769c8c652d5c195a60bafb/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/8e312ec4b8c39c6c1ed272e921e5af/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/8e312ec4b8c39c6c1ed272e921e5af/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291641762
unpaired = 6370863
MERGED PAIRED END READS = 291641762
MATES PROCESSED = 589654387
TOTAL READS     = 298012625
DISTINCT READS  = 1.56186e+08
DISTINCT COUNTS = 1143
MAX COUNT       = 1318459
COUNTS OF 1     = 1.05581e+08
MAX TERMS       = 100
OBSERVED COUNTS (1318460)
1	105581123
2	27908262
3	9850709
4	4457028
5	2407825
6	1467932
7	966494
8	677206
9	494588
10	373384
11	288572
12	228987
13	184869
14	151551
15	125892
16	106138
17	90021
18	77297
19	66520
20	57706
21	50681
22	44909
23	39357
24	35191
25	31687
26	28118
27	25716
28	23209
29	21099
30	18940
31	17106
32	15981
33	14623
34	13645
35	12397
36	11339
37	10690
38	9973
39	9160
40	8532
41	7967
42	7604
43	6959
44	6518
45	6085
46	5717
47	5368
48	5132
49	4753
50	4600
51	4385
52	4199
53	3893
54	3643
55	3542
56	3402
57	3107
58	2987
59	2889
60	2746
61	2599
62	2484
63	2278
64	2231
65	2113
66	2187
67	1943
68	1941
69	1808
70	1785
71	1769
72	1634
73	1577
74	1555
75	1403
76	1412
77	1397
78	1337
79	1284
80	1138
81	1184
82	1143
83	1085
84	1071
85	1005
86	1081
87	936
88	872
89	870
90	836
91	857
92	877
93	818
94	735
95	732
96	742
97	678
98	632
99	646
100	654
101	609
102	594
103	572
104	616
105	562
106	567
107	512
108	520
109	509
110	488
111	475
112	412
113	456
114	474
115	442
116	408
117	423
118	386
119	395
120	362
121	334
122	396
123	349
124	337
125	306
126	277
127	318
128	358
129	332
130	305
131	290
132	267
133	279
134	280
135	282
136	242
137	229
138	237
139	242
140	247
141	237
142	244
143	216
144	204
145	199
146	209
147	227
148	201
149	199
150	205
151	193
152	164
153	195
154	165
155	188
156	163
157	171
158	158
159	167
160	141
161	176
162	160
163	137
164	150
165	158
166	139
167	177
168	170
169	123
170	131
171	126
172	125
173	129
174	135
175	111
176	119
177	115
178	134
179	121
180	110
181	117
182	126
183	109
184	105
185	116
186	87
187	79
188	108
189	94
190	85
191	106
192	96
193	107
194	98
195	98
196	105
197	74
198	109
199	90
200	96
201	69
202	89
203	75
204	80
205	77
206	53
207	69
208	61
209	67
210	69
211	74
212	77
213	81
214	65
215	64
216	62
217	73
218	61
219	63
220	78
221	60
222	63
223	50
224	59
225	55
226	56
227	58
228	56
229	57
230	60
231	59
232	51
233	46
234	48
235	56
236	61
237	47
238	49
239	35
240	64
241	55
242	53
243	49
244	58
245	49
246	31
247	48
248	50
249	42
250	33
251	52
252	44
253	45
254	52
255	43
256	21
257	51
258	42
259	45
260	36
261	36
262	35
263	38
264	26
265	36
266	35
267	38
268	34
269	35
270	32
271	30
272	32
273	26
274	40
275	27
276	27
277	27
278	34
279	24
280	35
281	32
282	36
283	28
284	31
285	39
286	23
287	36
288	29
289	21
290	25
291	27
292	25
293	22
294	24
295	20
296	26
297	31
298	30
299	24
300	26
301	27
302	23
303	20
304	22
305	26
306	24
307	21
308	21
309	24
310	21
311	19
312	22
313	23
314	28
315	24
316	18
317	30
318	23
319	28
320	19
321	19
322	16
323	19
324	13
325	20
326	20
327	14
328	16
329	17
330	19
331	27
332	20
333	15
334	14
335	16
336	15
337	15
338	23
339	19
340	11
341	32
342	17
343	13
344	17
345	10
346	15
347	18
348	18
349	16
350	21
351	17
352	7
353	19
354	11
355	15
356	11
357	21
358	12
359	9
360	19
361	18
362	21
363	13
364	13
365	15
366	18
367	13
368	12
369	10
370	17
371	16
372	20
373	21
374	12
375	15
376	11
377	10
378	12
379	14
380	12
381	15
382	15
383	5
384	8
385	11
386	12
387	8
388	13
389	8
390	9
391	11
392	12
393	11
394	12
395	9
396	15
397	13
398	8
399	9
400	9
401	13
402	6
403	7
404	12
405	14
406	11
407	8
408	6
409	17
410	8
411	15
412	6
413	12
414	17
415	8
416	15
417	9
418	6
419	12
420	9
421	9
422	11
423	11
424	6
425	7
426	10
427	7
428	6
429	7
430	2
431	4
432	5
433	10
434	9
435	5
436	9
437	7
438	11
439	8
440	8
441	6
442	10
443	10
444	13
445	12
446	4
447	7
448	10
449	8
450	10
451	5
452	4
453	5
454	4
455	10
456	3
457	11
458	5
459	8
460	5
461	5
462	7
463	6
464	7
465	3
466	4
467	6
468	4
469	5
470	4
471	4
472	10
473	4
474	2
475	8
476	7
477	6
478	4
479	5
480	4
481	7
482	7
483	5
484	4
485	2
486	4
487	2
488	6
489	7
490	4
491	4
492	7
493	6
494	8
495	7
496	5
497	6
498	2
499	4
500	6
501	4
502	4
503	5
504	5
505	9
506	4
507	8
508	6
509	5
510	3
511	3
512	4
513	1
514	4
515	3
516	5
517	9
518	3
519	1
520	4
521	5
522	6
523	8
524	6
525	7
526	1
527	3
528	5
529	9
530	7
531	5
532	4
533	5
534	7
535	6
536	3
537	7
538	7
539	6
540	2
541	3
542	3
543	2
544	3
545	1
546	3
547	7
548	1
549	6
550	1
551	5
552	2
554	4
555	3
556	2
557	4
558	5
559	6
560	5
561	3
562	4
563	5
564	4
565	2
566	2
568	3
569	2
570	4
571	2
572	5
573	4
574	3
575	3
576	3
577	2
578	5
579	3
580	3
581	6
582	3
583	3
584	4
585	4
586	5
587	5
588	2
589	3
591	3
592	3
594	5
595	3
596	2
597	7
598	7
599	4
600	1
601	1
602	3
603	2
604	5
605	3
606	2
607	2
608	4
609	2
611	5
612	2
613	3
614	2
615	3
616	1
617	6
618	4
620	3
621	4
622	2
623	2
624	1
625	2
626	4
627	1
628	3
629	5
630	7
631	3
632	2
633	1
634	6
635	1
636	1
637	2
638	2
639	1
641	1
642	2
643	3
645	1
646	2
647	3
649	1
650	1
651	2
652	4
653	3
654	1
655	3
656	2
658	3
659	1
660	1
661	2
663	5
664	1
665	3
666	2
667	1
668	1
669	1
671	1
672	3
674	3
675	1
676	1
677	8
678	6
679	5
680	2
681	1
682	1
683	3
684	1
685	1
686	3
687	3
688	1
690	5
691	3
692	1
693	1
694	3
695	1
696	1
697	4
698	3
699	3
700	1
701	1
702	2
703	2
704	2
705	3
707	2
709	3
710	1
711	1
712	2
713	2
715	3
716	2
717	2
718	1
719	3
720	2
721	1
722	1
723	2
724	2
725	1
726	1
727	2
728	2
729	1
732	1
733	2
734	2
735	2
737	1
738	3
740	1
741	3
742	1
743	2
744	4
745	3
747	3
748	1
749	1
750	1
751	1
754	3
755	1
758	1
759	2
760	2
761	3
763	2
764	1
765	1
766	1
767	2
769	2
770	1
771	1
772	2
773	2
774	3
775	1
776	1
777	2
779	2
780	1
781	2
782	1
783	3
784	1
785	2
786	2
788	4
789	1
792	1
793	2
794	2
795	1
796	1
798	2
799	3
800	1
801	2
802	2
803	2
804	1
806	1
807	1
808	2
809	1
810	1
811	1
812	1
813	2
814	2
815	1
816	1
817	1
818	2
819	2
820	1
821	1
825	2
826	1
827	1
830	4
831	1
832	2
833	1
834	2
835	1
837	2
838	1
840	1
841	1
842	1
844	2
848	1
849	1
850	1
851	1
852	1
853	1
854	1
856	2
857	1
863	2
864	1
866	1
867	1
868	2
870	1
871	1
873	1
875	4
876	1
879	1
881	2
885	1
888	1
891	1
892	3
893	1
894	1
895	1
896	1
897	2
898	3
899	2
901	1
904	1
906	1
907	1
910	4
911	1
921	2
922	1
926	1
927	2
928	1
929	1
931	1
936	2
938	1
941	2
942	1
945	1
948	1
949	3
952	1
955	2
957	1
961	2
963	1
964	1
968	2
969	1
970	1
976	1
977	1
978	2
979	1
981	1
982	2
983	1
985	1
991	2
992	2
993	1
1000	1
1001	1
1002	1
1003	1
1006	1
1007	2
1008	3
1011	1
1013	1
1015	1
1016	1
1017	1
1018	2
1019	1
1023	1
1028	1
1029	1
1033	3
1036	1
1037	2
1038	1
1039	2
1040	2
1043	2
1044	1
1046	1
1049	2
1050	1
1052	1
1053	1
1055	1
1061	1
1065	3
1067	1
1068	1
1078	2
1079	1
1081	1
1083	1
1084	2
1089	1
1093	1
1095	1
1096	1
1101	2
1103	1
1106	1
1107	1
1109	1
1111	1
1112	1
1114	1
1124	1
1125	1
1127	2
1133	1
1136	1
1137	1
1141	1
1145	1
1150	1
1151	1
1155	1
1157	1
1160	1
1164	1
1165	1
1168	2
1171	2
1172	1
1175	1
1183	1
1187	2
1192	1
1195	1
1196	1
1198	1
1200	2
1209	1
1210	2
1211	1
1213	1
1219	1
1221	1
1223	1
1226	1
1229	1
1232	1
1234	1
1241	1
1246	1
1247	1
1249	1
1256	2
1261	1
1262	1
1268	1
1271	1
1273	1
1296	1
1297	1
1301	1
1304	2
1307	1
1318	2
1319	1
1336	1
1347	1
1349	3
1354	1
1360	2
1370	2
1375	1
1376	2
1383	1
1384	1
1389	1
1392	1
1394	1
1398	1
1400	1
1406	1
1409	1
1411	1
1413	1
1414	2
1417	1
1424	1
1428	1
1443	1
1447	1
1450	1
1467	1
1469	1
1471	1
1484	2
1493	1
1497	2
1501	1
1502	1
1507	1
1514	1
1519	1
1523	1
1530	1
1533	1
1534	1
1540	1
1544	1
1549	1
1557	1
1565	1
1566	1
1571	1
1581	1
1592	1
1607	1
1613	2
1618	1
1620	1
1635	1
1665	1
1667	1
1671	1
1684	1
1691	1
1692	1
1694	1
1699	1
1719	2
1729	1
1741	1
1749	1
1751	1
1766	1
1768	1
1791	1
1797	1
1837	1
1861	1
1878	1
1885	1
1888	1
1899	1
1921	1
1970	1
1986	1
1987	1
2000	1
2015	1
2042	1
2061	1
2084	1
2093	1
2104	1
2114	1
2118	1
2123	1
2139	1
2142	1
2147	1
2152	1
2158	1
2159	1
2192	1
2214	1
2219	1
2268	1
2269	1
2336	1
2361	1
2363	1
2395	1
2475	1
2517	1
2533	2
2538	1
2549	1
2580	1
2593	1
2600	1
2604	1
2611	1
2615	1
2630	1
2675	1
2682	1
2690	1
2694	1
2708	1
2719	1
2783	1
2789	1
2793	1
2795	1
2805	1
2861	1
2870	1
2872	1
2929	1
2933	1
2941	1
3030	1
3054	1
3091	1
3107	1
3152	1
3173	1
3248	1
3328	1
3373	1
3430	1
3559	2
3616	1
3692	1
3784	1
3798	1
4125	1
4287	1
4510	1
5223	1
7358	1
8378	1
8833	1
10425	1
11880	1
19775	1
64649	1
1318459	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._..._..__....__........_._.__._.___..__._....____..___.__..._.._.__...
__...___._..._.___.._....._.._....._.._.._.___..___...._..__._......_.._
._______...._.._....._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]