Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/d3f52fcc18e3122049b29fbaa32b4b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/29c5c013adbdceed5c3b4161de0f77/1173_BEE_T1_RNA_SLD_01_A23T55JLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/d3f52fcc18e3122049b29fbaa32b4b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory