#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.vcf" \
    --output "1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS