Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 09:39:14.248 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 09:39:14 GMT 2026] MarkDuplicates --INPUT 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 09:39:14 GMT 2026] Executing as ?@nf-2ccc3c820be3a87c5acabdf9128695fc-66013-ng8l5 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 09:39:14 MarkDuplicates Start of doWork freeMemory: 105132080; totalMemory: 134217728; maxMemory: 127137742848 INFO 2026-06-08 09:39:14 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 09:39:14 MarkDuplicates Will retain up to 460643995 data points before spilling to disk. INFO 2026-06-08 09:39:19 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,218,823 INFO 2026-06-08 09:39:19 MarkDuplicates Tracking 3625 as yet unmatched pairs. 247 records in RAM. INFO 2026-06-08 09:39:22 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,303,930 INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 6797 as yet unmatched pairs. 207 records in RAM. INFO 2026-06-08 09:39:24 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:8,356,172 INFO 2026-06-08 09:39:24 MarkDuplicates Tracking 10052 as yet unmatched pairs. 264 records in RAM. INFO 2026-06-08 09:39:26 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:9,773,302 INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 13042 as yet unmatched pairs. 231 records in RAM. INFO 2026-06-08 09:39:29 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:11,964,753 INFO 2026-06-08 09:39:29 MarkDuplicates Tracking 16359 as yet unmatched pairs. 436 records in RAM. INFO 2026-06-08 09:39:30 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:15,937,406 INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 18948 as yet unmatched pairs. 261 records in RAM. INFO 2026-06-08 09:39:33 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:19,153,308 INFO 2026-06-08 09:39:33 MarkDuplicates Tracking 22213 as yet unmatched pairs. 788 records in RAM. INFO 2026-06-08 09:39:35 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:20,941,505 INFO 2026-06-08 09:39:35 MarkDuplicates Tracking 24999 as yet unmatched pairs. 584 records in RAM. INFO 2026-06-08 09:39:37 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,884,579 INFO 2026-06-08 09:39:37 MarkDuplicates Tracking 28056 as yet unmatched pairs. 460 records in RAM. INFO 2026-06-08 09:39:39 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:23,695,820 INFO 2026-06-08 09:39:39 MarkDuplicates Tracking 30793 as yet unmatched pairs. 375 records in RAM. INFO 2026-06-08 09:39:42 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:26,731,172 INFO 2026-06-08 09:39:42 MarkDuplicates Tracking 33492 as yet unmatched pairs. 204 records in RAM. INFO 2026-06-08 09:39:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 2s. Last read position: chr1:28,237,852 INFO 2026-06-08 09:39:44 MarkDuplicates Tracking 36552 as yet unmatched pairs. 379 records in RAM. INFO 2026-06-08 09:39:46 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:31,059,340 INFO 2026-06-08 09:39:46 MarkDuplicates Tracking 40400 as yet unmatched pairs. 1220 records in RAM. INFO 2026-06-08 09:39:48 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:32,772,028 INFO 2026-06-08 09:39:48 MarkDuplicates Tracking 42494 as yet unmatched pairs. 373 records in RAM. INFO 2026-06-08 09:39:50 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:36,286,350 INFO 2026-06-08 09:39:50 MarkDuplicates Tracking 45329 as yet unmatched pairs. 317 records in RAM. INFO 2026-06-08 09:39:53 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:37,969,400 INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 48164 as yet unmatched pairs. 202 records in RAM. INFO 2026-06-08 09:39:55 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:39,847,248 INFO 2026-06-08 09:39:55 MarkDuplicates Tracking 50954 as yet unmatched pairs. 334 records in RAM. INFO 2026-06-08 09:39:57 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:43,364,429 INFO 2026-06-08 09:39:57 MarkDuplicates Tracking 54229 as yet unmatched pairs. 632 records in RAM. INFO 2026-06-08 09:39:59 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:44,776,681 INFO 2026-06-08 09:39:59 MarkDuplicates Tracking 60979 as yet unmatched pairs. 4299 records in RAM. INFO 2026-06-08 09:40:02 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:46,303,700 INFO 2026-06-08 09:40:02 MarkDuplicates Tracking 60426 as yet unmatched pairs. 733 records in RAM. INFO 2026-06-08 09:40:04 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:52,911,626 INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 62803 as yet unmatched pairs. 233 records in RAM. INFO 2026-06-08 09:40:06 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:61,771,429 INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 66518 as yet unmatched pairs. 1169 records in RAM. INFO 2026-06-08 09:40:09 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:67,687,710 INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 68457 as yet unmatched pairs. 367 records in RAM. INFO 2026-06-08 09:40:11 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:81,969,232 INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 71911 as yet unmatched pairs. 1340 records in RAM. INFO 2026-06-08 09:40:13 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:92,833,391 INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 73774 as yet unmatched pairs. 476 records in RAM. INFO 2026-06-08 09:40:15 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:99,862,330 INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 76071 as yet unmatched pairs. 354 records in RAM. INFO 2026-06-08 09:40:17 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:109,628,646 INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 78593 as yet unmatched pairs. 216 records in RAM. INFO 2026-06-08 09:40:20 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:113,911,247 INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 81392 as yet unmatched pairs. 227 records in RAM. INFO 2026-06-08 09:40:22 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:116,614,120 INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 84116 as yet unmatched pairs. 289 records in RAM. INFO 2026-06-08 09:40:24 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:119,937,416 INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 87694 as yet unmatched pairs. 941 records in RAM. INFO 2026-06-08 09:40:26 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:145,359,923 INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 88803 as yet unmatched pairs. 161 records in RAM. INFO 2026-06-08 09:40:28 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:147,622,371 INFO 2026-06-08 09:40:28 MarkDuplicates Tracking 90563 as yet unmatched pairs. 208 records in RAM. INFO 2026-06-08 09:40:30 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:149,812,110 INFO 2026-06-08 09:40:30 MarkDuplicates Tracking 92183 as yet unmatched pairs. 646 records in RAM. INFO 2026-06-08 09:40:31 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:150,487,900 INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 94083 as yet unmatched pairs. 155 records in RAM. INFO 2026-06-08 09:40:33 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:151,401,584 INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 97022 as yet unmatched pairs. 188 records in RAM. INFO 2026-06-08 09:40:35 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:152,214,829 INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 100730 as yet unmatched pairs. 982 records in RAM. INFO 2026-06-08 09:40:38 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,514 INFO 2026-06-08 09:40:38 MarkDuplicates Tracking 102883 as yet unmatched pairs. 572 records in RAM. INFO 2026-06-08 09:40:40 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:154,602,312 INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 105304 as yet unmatched pairs. 319 records in RAM. INFO 2026-06-08 09:40:42 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:155,190,170 INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 108025 as yet unmatched pairs. 345 records in RAM. INFO 2026-06-08 09:40:44 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:155,717,099 INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 111008 as yet unmatched pairs. 902 records in RAM. INFO 2026-06-08 09:40:46 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,660 INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 114820 as yet unmatched pairs. 1509 records in RAM. INFO 2026-06-08 09:40:48 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:159,205,839 INFO 2026-06-08 09:40:48 MarkDuplicates Tracking 116475 as yet unmatched pairs. 191 records in RAM. INFO 2026-06-08 09:40:50 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:161,543,167 INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 119371 as yet unmatched pairs. 176 records in RAM. INFO 2026-06-08 09:40:52 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:169,804,078 INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 122098 as yet unmatched pairs. 136 records in RAM. INFO 2026-06-08 09:40:54 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:174,976,119 INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 124650 as yet unmatched pairs. 174 records in RAM. INFO 2026-06-08 09:40:57 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:182,858,832 INFO 2026-06-08 09:40:57 MarkDuplicates Tracking 128071 as yet unmatched pairs. 821 records in RAM. INFO 2026-06-08 09:40:59 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 2s. Last read position: chr1:183,124,861 INFO 2026-06-08 09:40:59 MarkDuplicates Tracking 132356 as yet unmatched pairs. 1817 records in RAM. INFO 2026-06-08 09:41:01 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:183,551,841 INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 133429 as yet unmatched pairs. 150 records in RAM. INFO 2026-06-08 09:41:03 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:186,336,544 INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 136550 as yet unmatched pairs. 826 records in RAM. INFO 2026-06-08 09:41:05 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:200,908,743 INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 138286 as yet unmatched pairs. 130 records in RAM. INFO 2026-06-08 09:41:07 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr1:203,347,440 INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 141783 as yet unmatched pairs. 767 records in RAM. INFO 2026-06-08 09:41:09 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:205,720,516 INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 144269 as yet unmatched pairs. 565 records in RAM. INFO 2026-06-08 09:41:10 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:209,629,829 INFO 2026-06-08 09:41:10 MarkDuplicates Tracking 146571 as yet unmatched pairs. 161 records in RAM. INFO 2026-06-08 09:41:12 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:220,253,769 INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 149763 as yet unmatched pairs. 588 records in RAM. INFO 2026-06-08 09:41:14 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:225,862,803 INFO 2026-06-08 09:41:14 MarkDuplicates Tracking 152433 as yet unmatched pairs. 519 records in RAM. INFO 2026-06-08 09:41:16 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:228,148,413 INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 155481 as yet unmatched pairs. 309 records in RAM. INFO 2026-06-08 09:41:18 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:229,432,600 INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 159119 as yet unmatched pairs. 380 records in RAM. INFO 2026-06-08 09:41:20 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:236,017,257 INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 162048 as yet unmatched pairs. 202 records in RAM. INFO 2026-06-08 09:41:23 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:246,759,959 INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 165452 as yet unmatched pairs. 868 records in RAM. INFO 2026-06-08 09:41:27 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 4s. Last read position: chr2:9,845,225 INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 167636 as yet unmatched pairs. 160988 records in RAM. INFO 2026-06-08 09:41:29 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:20,037,600 INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 171714 as yet unmatched pairs. 164911 records in RAM. INFO 2026-06-08 09:41:31 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:24,711,066 INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 174192 as yet unmatched pairs. 167265 records in RAM. INFO 2026-06-08 09:41:34 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:27,311,914 INFO 2026-06-08 09:41:34 MarkDuplicates Tracking 176383 as yet unmatched pairs. 169345 records in RAM. INFO 2026-06-08 09:41:36 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:30,738,190 INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 179599 as yet unmatched pairs. 172441 records in RAM. INFO 2026-06-08 09:41:38 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,256 INFO 2026-06-08 09:41:38 MarkDuplicates Tracking 258166 as yet unmatched pairs. 171464 records in RAM. INFO 2026-06-08 09:41:40 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 480934 as yet unmatched pairs. 164710 records in RAM. INFO 2026-06-08 09:41:43 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264 INFO 2026-06-08 09:41:43 MarkDuplicates Tracking 1158447 as yet unmatched pairs. 143912 records in RAM. INFO 2026-06-08 09:41:45 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 1435627 as yet unmatched pairs. 135583 records in RAM. INFO 2026-06-08 09:41:46 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:41:46 MarkDuplicates Tracking 1438701 as yet unmatched pairs. 135455 records in RAM. INFO 2026-06-08 09:41:48 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:36,899,559 INFO 2026-06-08 09:41:48 MarkDuplicates Tracking 1529559 as yet unmatched pairs. 132219 records in RAM. INFO 2026-06-08 09:41:50 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:40,429,288 INFO 2026-06-08 09:41:50 MarkDuplicates Tracking 1528300 as yet unmatched pairs. 130628 records in RAM. INFO 2026-06-08 09:41:52 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:43,699,844 INFO 2026-06-08 09:41:52 MarkDuplicates Tracking 1524033 as yet unmatched pairs. 126219 records in RAM. INFO 2026-06-08 09:41:54 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:47,379,870 INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 1523075 as yet unmatched pairs. 125094 records in RAM. INFO 2026-06-08 09:41:56 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:55,349,567 INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 1518911 as yet unmatched pairs. 120823 records in RAM. INFO 2026-06-08 09:41:58 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:63,622,177 INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 1516297 as yet unmatched pairs. 118058 records in RAM. INFO 2026-06-08 09:42:00 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:69,804,599 INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 1516491 as yet unmatched pairs. 118142 records in RAM. INFO 2026-06-08 09:42:02 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:71,349,210 INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 1511432 as yet unmatched pairs. 112975 records in RAM. INFO 2026-06-08 09:42:05 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:74,456,147 INFO 2026-06-08 09:42:05 MarkDuplicates Tracking 1508667 as yet unmatched pairs. 110084 records in RAM. INFO 2026-06-08 09:42:08 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:86,070,214 INFO 2026-06-08 09:42:08 MarkDuplicates Tracking 1506148 as yet unmatched pairs. 107448 records in RAM. INFO 2026-06-08 09:42:09 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:96,295,478 INFO 2026-06-08 09:42:09 MarkDuplicates Tracking 1504135 as yet unmatched pairs. 105348 records in RAM. INFO 2026-06-08 09:42:11 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:101,002,702 INFO 2026-06-08 09:42:11 MarkDuplicates Tracking 1503185 as yet unmatched pairs. 104255 records in RAM. INFO 2026-06-08 09:42:13 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:107,870,655 INFO 2026-06-08 09:42:13 MarkDuplicates Tracking 1499183 as yet unmatched pairs. 100166 records in RAM. INFO 2026-06-08 09:42:15 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,538 INFO 2026-06-08 09:42:15 MarkDuplicates Tracking 1499824 as yet unmatched pairs. 100723 records in RAM. INFO 2026-06-08 09:42:17 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:109,915,930 INFO 2026-06-08 09:42:17 MarkDuplicates Tracking 1496615 as yet unmatched pairs. 97450 records in RAM. INFO 2026-06-08 09:42:19 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:110,562,681 INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 1495265 as yet unmatched pairs. 96038 records in RAM. INFO 2026-06-08 09:42:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:113,217,592 INFO 2026-06-08 09:42:21 MarkDuplicates Tracking 1498308 as yet unmatched pairs. 98994 records in RAM. INFO 2026-06-08 09:42:22 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:113,227,217 INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 1496171 as yet unmatched pairs. 96802 records in RAM. INFO 2026-06-08 09:42:24 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:113,596,527 INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 1487774 as yet unmatched pairs. 88325 records in RAM. INFO 2026-06-08 09:42:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr2:127,051,157 INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 1485465 as yet unmatched pairs. 85832 records in RAM. INFO 2026-06-08 09:42:28 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:130,657,766 INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 1482920 as yet unmatched pairs. 83184 records in RAM. INFO 2026-06-08 09:42:31 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:148,784,770 INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 1480866 as yet unmatched pairs. 80993 records in RAM. INFO 2026-06-08 09:42:33 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:151,603,611 INFO 2026-06-08 09:42:33 MarkDuplicates Tracking 1480154 as yet unmatched pairs. 80184 records in RAM. INFO 2026-06-08 09:42:35 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:156,550,622 INFO 2026-06-08 09:42:35 MarkDuplicates Tracking 1476682 as yet unmatched pairs. 76618 records in RAM. INFO 2026-06-08 09:42:37 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:164,729,917 INFO 2026-06-08 09:42:37 MarkDuplicates Tracking 1474448 as yet unmatched pairs. 74251 records in RAM. INFO 2026-06-08 09:42:39 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:172,487,300 INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 1471823 as yet unmatched pairs. 71482 records in RAM. INFO 2026-06-08 09:42:41 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:178,530,803 INFO 2026-06-08 09:42:41 MarkDuplicates Tracking 1470207 as yet unmatched pairs. 69737 records in RAM. INFO 2026-06-08 09:42:43 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:178,550,092 INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 1467517 as yet unmatched pairs. 66993 records in RAM. INFO 2026-06-08 09:42:45 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:178,571,919 INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 1465834 as yet unmatched pairs. 65224 records in RAM. INFO 2026-06-08 09:42:47 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:178,592,775 INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 1462540 as yet unmatched pairs. 61862 records in RAM. INFO 2026-06-08 09:42:49 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:178,620,496 INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 1459909 as yet unmatched pairs. 59167 records in RAM. INFO 2026-06-08 09:42:51 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:178,658,720 INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 1459961 as yet unmatched pairs. 59184 records in RAM. INFO 2026-06-08 09:42:53 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:178,710,800 INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 1456403 as yet unmatched pairs. 55585 records in RAM. INFO 2026-06-08 09:42:56 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:178,767,759 INFO 2026-06-08 09:42:56 MarkDuplicates Tracking 1453754 as yet unmatched pairs. 52848 records in RAM. INFO 2026-06-08 09:42:58 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:182,928,126 INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 1452200 as yet unmatched pairs. 51191 records in RAM. INFO 2026-06-08 09:43:00 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:188,996,477 INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 1449441 as yet unmatched pairs. 48294 records in RAM. INFO 2026-06-08 09:43:02 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:189,563,794 INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 1445473 as yet unmatched pairs. 44245 records in RAM. INFO 2026-06-08 09:43:04 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:197,501,122 INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 1443943 as yet unmatched pairs. 42481 records in RAM. INFO 2026-06-08 09:43:06 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr2:203,208,700 INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 1440767 as yet unmatched pairs. 39195 records in RAM. INFO 2026-06-08 09:43:08 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 2s. Last read position: chr2:210,016,507 INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 1438473 as yet unmatched pairs. 36752 records in RAM. INFO 2026-06-08 09:43:11 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,362,036 INFO 2026-06-08 09:43:11 MarkDuplicates Tracking 1440333 as yet unmatched pairs. 38310 records in RAM. INFO 2026-06-08 09:43:12 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,371 INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 1443092 as yet unmatched pairs. 41015 records in RAM. INFO 2026-06-08 09:43:15 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,382,250 INFO 2026-06-08 09:43:15 MarkDuplicates Tracking 1437972 as yet unmatched pairs. 35842 records in RAM. INFO 2026-06-08 09:43:17 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,140 INFO 2026-06-08 09:43:17 MarkDuplicates Tracking 1445934 as yet unmatched pairs. 43769 records in RAM. INFO 2026-06-08 09:43:19 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,933 INFO 2026-06-08 09:43:19 MarkDuplicates Tracking 1427813 as yet unmatched pairs. 25591 records in RAM. INFO 2026-06-08 09:43:21 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,321 INFO 2026-06-08 09:43:21 MarkDuplicates Tracking 1428324 as yet unmatched pairs. 26040 records in RAM. INFO 2026-06-08 09:43:23 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:217,848,790 INFO 2026-06-08 09:43:23 MarkDuplicates Tracking 1421067 as yet unmatched pairs. 18685 records in RAM. INFO 2026-06-08 09:43:25 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:219,284,707 INFO 2026-06-08 09:43:25 MarkDuplicates Tracking 1418234 as yet unmatched pairs. 15761 records in RAM. INFO 2026-06-08 09:43:27 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:227,280,897 INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 1414940 as yet unmatched pairs. 12327 records in RAM. INFO 2026-06-08 09:43:29 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:231,708,642 INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 1413232 as yet unmatched pairs. 10469 records in RAM. INFO 2026-06-08 09:43:31 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:237,344,940 INFO 2026-06-08 09:43:31 MarkDuplicates Tracking 1411218 as yet unmatched pairs. 8331 records in RAM. INFO 2026-06-08 09:43:33 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr2:238,253,242 INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 1407301 as yet unmatched pairs. 4317 records in RAM. INFO 2026-06-08 09:43:35 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr2:241,256,693 INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 1404860 as yet unmatched pairs. 1761 records in RAM. INFO 2026-06-08 09:43:39 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 3s. Last read position: chr3:9,739,378 INFO 2026-06-08 09:43:39 MarkDuplicates Tracking 1401495 as yet unmatched pairs. 85751 records in RAM. INFO 2026-06-08 09:43:40 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:12,836,177 INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 1401316 as yet unmatched pairs. 85479 records in RAM. INFO 2026-06-08 09:43:43 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:15,097,413 INFO 2026-06-08 09:43:43 MarkDuplicates Tracking 1395799 as yet unmatched pairs. 79862 records in RAM. INFO 2026-06-08 09:43:45 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:30,674,107 INFO 2026-06-08 09:43:45 MarkDuplicates Tracking 1394003 as yet unmatched pairs. 77828 records in RAM. INFO 2026-06-08 09:43:47 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:37,325,399 INFO 2026-06-08 09:43:47 MarkDuplicates Tracking 1391400 as yet unmatched pairs. 75051 records in RAM. INFO 2026-06-08 09:43:49 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:41,224,598 INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 1389877 as yet unmatched pairs. 73454 records in RAM. INFO 2026-06-08 09:43:51 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr3:46,671,992 INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 1386525 as yet unmatched pairs. 70001 records in RAM. INFO 2026-06-08 09:43:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 2s. Last read position: chr3:47,891,577 INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 1383640 as yet unmatched pairs. 67036 records in RAM. INFO 2026-06-08 09:43:55 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:48,765,068 INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 1380566 as yet unmatched pairs. 63883 records in RAM. INFO 2026-06-08 09:43:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 2s. Last read position: chr3:49,163,042 INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 1377571 as yet unmatched pairs. 60824 records in RAM. INFO 2026-06-08 09:44:00 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr3:50,117,150 INFO 2026-06-08 09:44:00 MarkDuplicates Tracking 1374806 as yet unmatched pairs. 57982 records in RAM. INFO 2026-06-08 09:44:01 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,943 INFO 2026-06-08 09:44:01 MarkDuplicates Tracking 1372120 as yet unmatched pairs. 55195 records in RAM. INFO 2026-06-08 09:44:04 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr3:52,814,343 INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 1369112 as yet unmatched pairs. 52098 records in RAM. INFO 2026-06-08 09:44:06 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 2s. Last read position: chr3:58,121,314 INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 1367016 as yet unmatched pairs. 49876 records in RAM. INFO 2026-06-08 09:44:08 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr3:64,602,042 INFO 2026-06-08 09:44:08 MarkDuplicates Tracking 1364586 as yet unmatched pairs. 47271 records in RAM. INFO 2026-06-08 09:44:10 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:70,965,916 INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 1361473 as yet unmatched pairs. 44032 records in RAM. INFO 2026-06-08 09:44:12 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr3:100,736,573 INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 1359853 as yet unmatched pairs. 42259 records in RAM. INFO 2026-06-08 09:44:14 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:105,776,356 INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 1356698 as yet unmatched pairs. 39040 records in RAM. INFO 2026-06-08 09:44:16 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr3:114,351,373 INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 1355182 as yet unmatched pairs. 37395 records in RAM. INFO 2026-06-08 09:44:18 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:122,700,727 INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 1351764 as yet unmatched pairs. 33777 records in RAM. INFO 2026-06-08 09:44:20 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr3:127,722,453 INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 1349140 as yet unmatched pairs. 31034 records in RAM. INFO 2026-06-08 09:44:22 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr3:129,589,433 INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 1346154 as yet unmatched pairs. 27938 records in RAM. INFO 2026-06-08 09:44:24 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr3:136,293,778 INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 1343706 as yet unmatched pairs. 25380 records in RAM. INFO 2026-06-08 09:44:27 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr3:149,173,695 INFO 2026-06-08 09:44:27 MarkDuplicates Tracking 1343172 as yet unmatched pairs. 24697 records in RAM. INFO 2026-06-08 09:44:28 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr3:149,209,287 INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 1344603 as yet unmatched pairs. 26062 records in RAM. INFO 2026-06-08 09:44:30 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr3:150,624,862 INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 1336487 as yet unmatched pairs. 17859 records in RAM. INFO 2026-06-08 09:44:33 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr3:169,116,254 INFO 2026-06-08 09:44:33 MarkDuplicates Tracking 1334124 as yet unmatched pairs. 15351 records in RAM. INFO 2026-06-08 09:44:34 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr3:170,361,351 INFO 2026-06-08 09:44:34 MarkDuplicates Tracking 1337434 as yet unmatched pairs. 18515 records in RAM. INFO 2026-06-08 09:44:36 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr3:179,419,447 INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 1328771 as yet unmatched pairs. 9667 records in RAM. INFO 2026-06-08 09:44:38 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,661 INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 1326407 as yet unmatched pairs. 7188 records in RAM. INFO 2026-06-08 09:44:40 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr3:187,731,800 INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 1323493 as yet unmatched pairs. 4187 records in RAM. INFO 2026-06-08 09:44:43 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr3:195,725,236 INFO 2026-06-08 09:44:43 MarkDuplicates Tracking 1321099 as yet unmatched pairs. 1680 records in RAM. INFO 2026-06-08 09:44:45 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr4:903,399 INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 1318757 as yet unmatched pairs. 54607 records in RAM. INFO 2026-06-08 09:44:48 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr4:2,829,629 INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 1315515 as yet unmatched pairs. 51265 records in RAM. INFO 2026-06-08 09:44:50 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr4:7,434,593 INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 1312748 as yet unmatched pairs. 48366 records in RAM. INFO 2026-06-08 09:44:52 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr4:16,016,167 INFO 2026-06-08 09:44:52 MarkDuplicates Tracking 1312030 as yet unmatched pairs. 47564 records in RAM. INFO 2026-06-08 09:44:54 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr4:25,662,816 INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 1312682 as yet unmatched pairs. 48073 records in RAM. INFO 2026-06-08 09:44:56 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr4:26,420,655 INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 1305406 as yet unmatched pairs. 40753 records in RAM. INFO 2026-06-08 09:44:58 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr4:40,432,738 INFO 2026-06-08 09:44:58 MarkDuplicates Tracking 1303606 as yet unmatched pairs. 38825 records in RAM. INFO 2026-06-08 09:45:00 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr4:54,280,419 INFO 2026-06-08 09:45:00 MarkDuplicates Tracking 1300345 as yet unmatched pairs. 35433 records in RAM. INFO 2026-06-08 09:45:02 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr4:57,032,445 INFO 2026-06-08 09:45:02 MarkDuplicates Tracking 1306136 as yet unmatched pairs. 41138 records in RAM. INFO 2026-06-08 09:45:04 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr4:74,158,181 INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 1294968 as yet unmatched pairs. 29859 records in RAM. INFO 2026-06-08 09:45:06 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr4:82,848,823 INFO 2026-06-08 09:45:06 MarkDuplicates Tracking 1293141 as yet unmatched pairs. 27916 records in RAM. INFO 2026-06-08 09:45:08 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr4:87,125,037 INFO 2026-06-08 09:45:08 MarkDuplicates Tracking 1290870 as yet unmatched pairs. 25529 records in RAM. INFO 2026-06-08 09:45:10 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr4:94,283,215 INFO 2026-06-08 09:45:10 MarkDuplicates Tracking 1287727 as yet unmatched pairs. 22296 records in RAM. INFO 2026-06-08 09:45:12 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr4:106,347,568 INFO 2026-06-08 09:45:12 MarkDuplicates Tracking 1285561 as yet unmatched pairs. 20006 records in RAM. INFO 2026-06-08 09:45:14 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr4:119,030,767 INFO 2026-06-08 09:45:14 MarkDuplicates Tracking 1282814 as yet unmatched pairs. 17114 records in RAM. INFO 2026-06-08 09:45:16 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr4:128,107,168 INFO 2026-06-08 09:45:16 MarkDuplicates Tracking 1280913 as yet unmatched pairs. 15076 records in RAM. INFO 2026-06-08 09:45:18 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr4:145,624,160 INFO 2026-06-08 09:45:18 MarkDuplicates Tracking 1277799 as yet unmatched pairs. 11814 records in RAM. INFO 2026-06-08 09:45:20 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr4:151,175,449 INFO 2026-06-08 09:45:20 MarkDuplicates Tracking 1275679 as yet unmatched pairs. 9565 records in RAM. INFO 2026-06-08 09:45:22 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr4:158,612,130 INFO 2026-06-08 09:45:22 MarkDuplicates Tracking 1277149 as yet unmatched pairs. 10812 records in RAM. INFO 2026-06-08 09:45:24 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr4:169,992,352 INFO 2026-06-08 09:45:24 MarkDuplicates Tracking 1270767 as yet unmatched pairs. 4298 records in RAM. INFO 2026-06-08 09:45:26 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr4:184,764,900 INFO 2026-06-08 09:45:26 MarkDuplicates Tracking 1268111 as yet unmatched pairs. 1430 records in RAM. INFO 2026-06-08 09:45:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr5:1,801,471 INFO 2026-06-08 09:45:29 MarkDuplicates Tracking 1265321 as yet unmatched pairs. 77403 records in RAM. INFO 2026-06-08 09:45:31 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr5:14,374,253 INFO 2026-06-08 09:45:31 MarkDuplicates Tracking 1263945 as yet unmatched pairs. 75930 records in RAM. INFO 2026-06-08 09:45:33 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:31,526,579 INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 1259557 as yet unmatched pairs. 71478 records in RAM. INFO 2026-06-08 09:45:35 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:37,169,147 INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 1257481 as yet unmatched pairs. 69268 records in RAM. INFO 2026-06-08 09:45:37 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr5:50,795,035 INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 1254907 as yet unmatched pairs. 66586 records in RAM. INFO 2026-06-08 09:45:39 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:65,994,771 INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 1252777 as yet unmatched pairs. 64321 records in RAM. INFO 2026-06-08 09:45:41 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr5:71,491,041 INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 1250464 as yet unmatched pairs. 61909 records in RAM. INFO 2026-06-08 09:45:43 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr5:75,359,521 INFO 2026-06-08 09:45:43 MarkDuplicates Tracking 1248422 as yet unmatched pairs. 59785 records in RAM. INFO 2026-06-08 09:45:45 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr5:80,072,373 INFO 2026-06-08 09:45:45 MarkDuplicates Tracking 1247138 as yet unmatched pairs. 58406 records in RAM. INFO 2026-06-08 09:45:47 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr5:83,519,615 INFO 2026-06-08 09:45:47 MarkDuplicates Tracking 1245478 as yet unmatched pairs. 56621 records in RAM. INFO 2026-06-08 09:45:49 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr5:83,540,038 INFO 2026-06-08 09:45:49 MarkDuplicates Tracking 1241451 as yet unmatched pairs. 52524 records in RAM. INFO 2026-06-08 09:45:52 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr5:90,519,288 INFO 2026-06-08 09:45:52 MarkDuplicates Tracking 1238495 as yet unmatched pairs. 49486 records in RAM. INFO 2026-06-08 09:45:54 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr5:108,867,936 INFO 2026-06-08 09:45:54 MarkDuplicates Tracking 1236064 as yet unmatched pairs. 46905 records in RAM. INFO 2026-06-08 09:45:56 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr5:123,023,970 INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 1233519 as yet unmatched pairs. 44223 records in RAM. INFO 2026-06-08 09:45:58 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr5:132,934,625 INFO 2026-06-08 09:45:58 MarkDuplicates Tracking 1231163 as yet unmatched pairs. 41765 records in RAM. INFO 2026-06-08 09:46:00 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr5:135,571,832 INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 1228760 as yet unmatched pairs. 39287 records in RAM. INFO 2026-06-08 09:46:02 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr5:138,575,243 INFO 2026-06-08 09:46:02 MarkDuplicates Tracking 1225633 as yet unmatched pairs. 36080 records in RAM. INFO 2026-06-08 09:46:04 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr5:140,567,644 INFO 2026-06-08 09:46:04 MarkDuplicates Tracking 1223105 as yet unmatched pairs. 33333 records in RAM. INFO 2026-06-08 09:46:06 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr5:141,973,706 INFO 2026-06-08 09:46:06 MarkDuplicates Tracking 1220652 as yet unmatched pairs. 30815 records in RAM. INFO 2026-06-08 09:46:08 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr5:150,094,935 INFO 2026-06-08 09:46:08 MarkDuplicates Tracking 1218016 as yet unmatched pairs. 28068 records in RAM. INFO 2026-06-08 09:46:10 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,103 INFO 2026-06-08 09:46:10 MarkDuplicates Tracking 1217960 as yet unmatched pairs. 27970 records in RAM. INFO 2026-06-08 09:46:12 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr5:151,027,913 INFO 2026-06-08 09:46:12 MarkDuplicates Tracking 1216768 as yet unmatched pairs. 26715 records in RAM. INFO 2026-06-08 09:46:14 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr5:157,052,436 INFO 2026-06-08 09:46:14 MarkDuplicates Tracking 1209379 as yet unmatched pairs. 19240 records in RAM. INFO 2026-06-08 09:46:16 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr5:171,183,221 INFO 2026-06-08 09:46:16 MarkDuplicates Tracking 1206711 as yet unmatched pairs. 16475 records in RAM. INFO 2026-06-08 09:46:18 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,932 INFO 2026-06-08 09:46:18 MarkDuplicates Tracking 1210026 as yet unmatched pairs. 19747 records in RAM. INFO 2026-06-08 09:46:20 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr5:173,144,548 INFO 2026-06-08 09:46:20 MarkDuplicates Tracking 1201999 as yet unmatched pairs. 11640 records in RAM. INFO 2026-06-08 09:46:22 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr5:177,457,690 INFO 2026-06-08 09:46:22 MarkDuplicates Tracking 1199389 as yet unmatched pairs. 8924 records in RAM. INFO 2026-06-08 09:46:24 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr5:179,708,289 INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 1199084 as yet unmatched pairs. 8560 records in RAM. INFO 2026-06-08 09:46:26 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,445 INFO 2026-06-08 09:46:26 MarkDuplicates Tracking 1196402 as yet unmatched pairs. 5816 records in RAM. INFO 2026-06-08 09:46:28 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 2s. Last read position: chr5:181,256,916 INFO 2026-06-08 09:46:28 MarkDuplicates Tracking 1190759 as yet unmatched pairs. 96 records in RAM. INFO 2026-06-08 09:46:31 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr6:7,289,786 INFO 2026-06-08 09:46:31 MarkDuplicates Tracking 1188722 as yet unmatched pairs. 78975 records in RAM. INFO 2026-06-08 09:46:33 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:11,188,260 INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 1185203 as yet unmatched pairs. 75340 records in RAM. INFO 2026-06-08 09:46:35 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr6:20,955,444 INFO 2026-06-08 09:46:35 MarkDuplicates Tracking 1182816 as yet unmatched pairs. 72661 records in RAM. INFO 2026-06-08 09:46:37 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr6:26,158,327 INFO 2026-06-08 09:46:37 MarkDuplicates Tracking 1180850 as yet unmatched pairs. 70573 records in RAM. INFO 2026-06-08 09:46:39 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:27,814,440 INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 1178320 as yet unmatched pairs. 67958 records in RAM. INFO 2026-06-08 09:46:41 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:30,586,696 INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 1174464 as yet unmatched pairs. 64015 records in RAM. INFO 2026-06-08 09:46:43 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr6:31,558,520 INFO 2026-06-08 09:46:43 MarkDuplicates Tracking 1171617 as yet unmatched pairs. 61092 records in RAM. INFO 2026-06-08 09:46:45 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,733 INFO 2026-06-08 09:46:45 MarkDuplicates Tracking 1169423 as yet unmatched pairs. 58850 records in RAM. INFO 2026-06-08 09:46:47 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr6:32,087,445 INFO 2026-06-08 09:46:47 MarkDuplicates Tracking 1166620 as yet unmatched pairs. 55992 records in RAM. INFO 2026-06-08 09:46:49 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr6:33,287,395 INFO 2026-06-08 09:46:49 MarkDuplicates Tracking 1163835 as yet unmatched pairs. 53135 records in RAM. INFO 2026-06-08 09:46:51 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr6:34,856,218 INFO 2026-06-08 09:46:51 MarkDuplicates Tracking 1160852 as yet unmatched pairs. 50087 records in RAM. INFO 2026-06-08 09:46:53 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr6:39,927,377 INFO 2026-06-08 09:46:53 MarkDuplicates Tracking 1158258 as yet unmatched pairs. 47345 records in RAM. INFO 2026-06-08 09:46:55 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr6:43,512,141 INFO 2026-06-08 09:46:55 MarkDuplicates Tracking 1155382 as yet unmatched pairs. 44386 records in RAM. INFO 2026-06-08 09:46:57 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr6:49,278,377 INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 1152733 as yet unmatched pairs. 41636 records in RAM. INFO 2026-06-08 09:46:59 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:57,147,085 INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 1150476 as yet unmatched pairs. 39150 records in RAM. INFO 2026-06-08 09:47:01 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr6:75,117,396 INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 1149284 as yet unmatched pairs. 37637 records in RAM. INFO 2026-06-08 09:47:03 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr6:79,202,344 INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 1146020 as yet unmatched pairs. 34299 records in RAM. INFO 2026-06-08 09:47:05 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr6:89,674,288 INFO 2026-06-08 09:47:05 MarkDuplicates Tracking 1143352 as yet unmatched pairs. 31536 records in RAM. INFO 2026-06-08 09:47:07 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr6:107,876,581 INFO 2026-06-08 09:47:07 MarkDuplicates Tracking 1140930 as yet unmatched pairs. 28974 records in RAM. INFO 2026-06-08 09:47:09 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr6:115,942,428 INFO 2026-06-08 09:47:09 MarkDuplicates Tracking 1138299 as yet unmatched pairs. 26251 records in RAM. INFO 2026-06-08 09:47:11 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr6:126,644,190 INFO 2026-06-08 09:47:11 MarkDuplicates Tracking 1135580 as yet unmatched pairs. 23437 records in RAM. INFO 2026-06-08 09:47:13 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr6:136,154,011 INFO 2026-06-08 09:47:13 MarkDuplicates Tracking 1133222 as yet unmatched pairs. 20976 records in RAM. INFO 2026-06-08 09:47:15 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr6:139,373,839 INFO 2026-06-08 09:47:15 MarkDuplicates Tracking 1131846 as yet unmatched pairs. 19521 records in RAM. INFO 2026-06-08 09:47:17 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr6:149,378,639 INFO 2026-06-08 09:47:17 MarkDuplicates Tracking 1128277 as yet unmatched pairs. 15834 records in RAM. INFO 2026-06-08 09:47:19 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr6:154,733,837 INFO 2026-06-08 09:47:19 MarkDuplicates Tracking 1125354 as yet unmatched pairs. 12819 records in RAM. INFO 2026-06-08 09:47:21 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,612 INFO 2026-06-08 09:47:21 MarkDuplicates Tracking 1123199 as yet unmatched pairs. 10562 records in RAM. INFO 2026-06-08 09:47:23 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr6:159,692,776 INFO 2026-06-08 09:47:23 MarkDuplicates Tracking 1122817 as yet unmatched pairs. 10126 records in RAM. INFO 2026-06-08 09:47:25 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr6:166,488,843 INFO 2026-06-08 09:47:25 MarkDuplicates Tracking 1117240 as yet unmatched pairs. 4477 records in RAM. INFO 2026-06-08 09:47:27 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr6:169,221,492 INFO 2026-06-08 09:47:27 MarkDuplicates Tracking 1114344 as yet unmatched pairs. 1488 records in RAM. INFO 2026-06-08 09:47:30 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr7:1,548,625 INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 1111132 as yet unmatched pairs. 82616 records in RAM. INFO 2026-06-08 09:47:32 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr7:5,389,302 INFO 2026-06-08 09:47:32 MarkDuplicates Tracking 1107779 as yet unmatched pairs. 79170 records in RAM. INFO 2026-06-08 09:47:34 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,598 INFO 2026-06-08 09:47:34 MarkDuplicates Tracking 1111082 as yet unmatched pairs. 82404 records in RAM. INFO 2026-06-08 09:47:36 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr7:6,484,071 INFO 2026-06-08 09:47:36 MarkDuplicates Tracking 1102001 as yet unmatched pairs. 73263 records in RAM. INFO 2026-06-08 09:47:38 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:20,380,750 INFO 2026-06-08 09:47:38 MarkDuplicates Tracking 1099748 as yet unmatched pairs. 70923 records in RAM. INFO 2026-06-08 09:47:41 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 2s. Last read position: chr7:28,956,502 INFO 2026-06-08 09:47:41 MarkDuplicates Tracking 1096830 as yet unmatched pairs. 67935 records in RAM. INFO 2026-06-08 09:47:43 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr7:38,743,435 INFO 2026-06-08 09:47:43 MarkDuplicates Tracking 1094678 as yet unmatched pairs. 65685 records in RAM. INFO 2026-06-08 09:47:45 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr7:44,116,880 INFO 2026-06-08 09:47:45 MarkDuplicates Tracking 1091562 as yet unmatched pairs. 62489 records in RAM. INFO 2026-06-08 09:47:47 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr7:55,142,303 INFO 2026-06-08 09:47:47 MarkDuplicates Tracking 1089715 as yet unmatched pairs. 60547 records in RAM. INFO 2026-06-08 09:47:49 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr7:66,945,008 INFO 2026-06-08 09:47:49 MarkDuplicates Tracking 1085860 as yet unmatched pairs. 56630 records in RAM. INFO 2026-06-08 09:47:50 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr7:73,476,919 INFO 2026-06-08 09:47:50 MarkDuplicates Tracking 1084493 as yet unmatched pairs. 55189 records in RAM. INFO 2026-06-08 09:47:52 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 2s. Last read position: chr7:74,832,930 INFO 2026-06-08 09:47:52 MarkDuplicates Tracking 1081923 as yet unmatched pairs. 52563 records in RAM. INFO 2026-06-08 09:47:54 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr7:76,302,693 INFO 2026-06-08 09:47:54 MarkDuplicates Tracking 1080153 as yet unmatched pairs. 50739 records in RAM. INFO 2026-06-08 09:47:56 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:80,810,626 INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 1077859 as yet unmatched pairs. 48346 records in RAM. INFO 2026-06-08 09:47:58 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr7:92,294,919 INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 1074849 as yet unmatched pairs. 45264 records in RAM. INFO 2026-06-08 09:48:01 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr7:94,407,846 INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 1073189 as yet unmatched pairs. 43498 records in RAM. INFO 2026-06-08 09:48:03 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr7:94,664,888 INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 1068999 as yet unmatched pairs. 39229 records in RAM. INFO 2026-06-08 09:48:05 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr7:99,374,753 INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 1066319 as yet unmatched pairs. 36437 records in RAM. INFO 2026-06-08 09:48:07 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr7:100,677,605 INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 1063460 as yet unmatched pairs. 33524 records in RAM. INFO 2026-06-08 09:48:09 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr7:102,560,680 INFO 2026-06-08 09:48:09 MarkDuplicates Tracking 1060665 as yet unmatched pairs. 30635 records in RAM. INFO 2026-06-08 09:48:11 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr7:107,929,414 INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 1059798 as yet unmatched pairs. 29688 records in RAM. INFO 2026-06-08 09:48:13 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr7:113,117,391 INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 1055952 as yet unmatched pairs. 25704 records in RAM. INFO 2026-06-08 09:48:15 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:116,892,993 INFO 2026-06-08 09:48:15 MarkDuplicates Tracking 1053537 as yet unmatched pairs. 23236 records in RAM. INFO 2026-06-08 09:48:17 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr7:127,887,969 INFO 2026-06-08 09:48:17 MarkDuplicates Tracking 1051871 as yet unmatched pairs. 21508 records in RAM. INFO 2026-06-08 09:48:20 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr7:131,327,880 INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 1047970 as yet unmatched pairs. 17482 records in RAM. INFO 2026-06-08 09:48:21 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:137,885,458 INFO 2026-06-08 09:48:21 MarkDuplicates Tracking 1046213 as yet unmatched pairs. 15623 records in RAM. INFO 2026-06-08 09:48:23 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr7:139,716,985 INFO 2026-06-08 09:48:23 MarkDuplicates Tracking 1043062 as yet unmatched pairs. 12394 records in RAM. INFO 2026-06-08 09:48:25 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:144,277,642 INFO 2026-06-08 09:48:25 MarkDuplicates Tracking 1040447 as yet unmatched pairs. 9709 records in RAM. INFO 2026-06-08 09:48:27 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr7:150,627,475 INFO 2026-06-08 09:48:27 MarkDuplicates Tracking 1037892 as yet unmatched pairs. 7082 records in RAM. INFO 2026-06-08 09:48:29 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr7:151,081,767 INFO 2026-06-08 09:48:29 MarkDuplicates Tracking 1035251 as yet unmatched pairs. 4384 records in RAM. INFO 2026-06-08 09:48:31 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:155,739,873 INFO 2026-06-08 09:48:31 MarkDuplicates Tracking 1032194 as yet unmatched pairs. 1263 records in RAM. INFO 2026-06-08 09:48:34 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr8:9,735,057 INFO 2026-06-08 09:48:34 MarkDuplicates Tracking 1029378 as yet unmatched pairs. 75778 records in RAM. INFO 2026-06-08 09:48:36 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr8:17,560,420 INFO 2026-06-08 09:48:36 MarkDuplicates Tracking 1027520 as yet unmatched pairs. 73846 records in RAM. INFO 2026-06-08 09:48:38 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr8:22,607,015 INFO 2026-06-08 09:48:38 MarkDuplicates Tracking 1026004 as yet unmatched pairs. 72253 records in RAM. INFO 2026-06-08 09:48:41 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr8:27,599,992 INFO 2026-06-08 09:48:41 MarkDuplicates Tracking 1021590 as yet unmatched pairs. 67748 records in RAM. INFO 2026-06-08 09:48:43 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr8:29,147,424 INFO 2026-06-08 09:48:43 MarkDuplicates Tracking 1018945 as yet unmatched pairs. 65013 records in RAM. INFO 2026-06-08 09:48:45 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:37,877,456 INFO 2026-06-08 09:48:45 MarkDuplicates Tracking 1015582 as yet unmatched pairs. 61569 records in RAM. INFO 2026-06-08 09:48:47 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr8:38,421,802 INFO 2026-06-08 09:48:47 MarkDuplicates Tracking 1013173 as yet unmatched pairs. 59115 records in RAM. INFO 2026-06-08 09:48:49 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr8:41,933,608 INFO 2026-06-08 09:48:49 MarkDuplicates Tracking 1010707 as yet unmatched pairs. 56601 records in RAM. INFO 2026-06-08 09:48:51 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:47,836,355 INFO 2026-06-08 09:48:51 MarkDuplicates Tracking 1007854 as yet unmatched pairs. 53648 records in RAM. INFO 2026-06-08 09:48:53 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr8:56,074,384 INFO 2026-06-08 09:48:53 MarkDuplicates Tracking 1004704 as yet unmatched pairs. 50444 records in RAM. INFO 2026-06-08 09:48:55 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr8:67,198,931 INFO 2026-06-08 09:48:55 MarkDuplicates Tracking 1002625 as yet unmatched pairs. 48269 records in RAM. INFO 2026-06-08 09:48:57 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr8:70,156,306 INFO 2026-06-08 09:48:57 MarkDuplicates Tracking 1000083 as yet unmatched pairs. 45639 records in RAM. INFO 2026-06-08 09:48:59 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr8:73,322,719 INFO 2026-06-08 09:48:59 MarkDuplicates Tracking 1001635 as yet unmatched pairs. 47107 records in RAM. INFO 2026-06-08 09:49:01 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:85,214,534 INFO 2026-06-08 09:49:01 MarkDuplicates Tracking 996163 as yet unmatched pairs. 41527 records in RAM. INFO 2026-06-08 09:49:03 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr8:94,436,566 INFO 2026-06-08 09:49:03 MarkDuplicates Tracking 992461 as yet unmatched pairs. 37727 records in RAM. INFO 2026-06-08 09:49:05 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr8:99,115,708 INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 989938 as yet unmatched pairs. 35125 records in RAM. INFO 2026-06-08 09:49:07 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:100,715,547 INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 988892 as yet unmatched pairs. 34036 records in RAM. INFO 2026-06-08 09:49:09 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr8:102,651,584 INFO 2026-06-08 09:49:09 MarkDuplicates Tracking 984601 as yet unmatched pairs. 29636 records in RAM. INFO 2026-06-08 09:49:12 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr8:118,098,628 INFO 2026-06-08 09:49:12 MarkDuplicates Tracking 981993 as yet unmatched pairs. 26919 records in RAM. INFO 2026-06-08 09:49:14 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,170 INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 979163 as yet unmatched pairs. 23990 records in RAM. INFO 2026-06-08 09:49:16 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:133,248,756 INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 977312 as yet unmatched pairs. 22024 records in RAM. INFO 2026-06-08 09:49:18 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr8:142,665,460 INFO 2026-06-08 09:49:18 MarkDuplicates Tracking 973163 as yet unmatched pairs. 17742 records in RAM. INFO 2026-06-08 09:49:20 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,813,092 INFO 2026-06-08 09:49:20 MarkDuplicates Tracking 969833 as yet unmatched pairs. 14348 records in RAM. INFO 2026-06-08 09:49:21 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,675 INFO 2026-06-08 09:49:21 MarkDuplicates Tracking 969378 as yet unmatched pairs. 13880 records in RAM. INFO 2026-06-08 09:49:23 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:143,871,295 INFO 2026-06-08 09:49:23 MarkDuplicates Tracking 967909 as yet unmatched pairs. 12391 records in RAM. INFO 2026-06-08 09:49:25 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,925,527 INFO 2026-06-08 09:49:25 MarkDuplicates Tracking 963917 as yet unmatched pairs. 8355 records in RAM. INFO 2026-06-08 09:49:27 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:144,291,810 INFO 2026-06-08 09:49:27 MarkDuplicates Tracking 959881 as yet unmatched pairs. 4267 records in RAM. INFO 2026-06-08 09:49:29 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr8:144,792,012 INFO 2026-06-08 09:49:29 MarkDuplicates Tracking 956225 as yet unmatched pairs. 545 records in RAM. INFO 2026-06-08 09:49:31 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 2s. Last read position: chr9:6,013,174 INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 953516 as yet unmatched pairs. 46243 records in RAM. INFO 2026-06-08 09:49:33 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr9:22,008,870 INFO 2026-06-08 09:49:33 MarkDuplicates Tracking 950948 as yet unmatched pairs. 43510 records in RAM. INFO 2026-06-08 09:49:35 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr9:34,249,794 INFO 2026-06-08 09:49:35 MarkDuplicates Tracking 948429 as yet unmatched pairs. 40922 records in RAM. INFO 2026-06-08 09:49:37 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,741 INFO 2026-06-08 09:49:37 MarkDuplicates Tracking 945343 as yet unmatched pairs. 37774 records in RAM. INFO 2026-06-08 09:49:39 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:69,517,099 INFO 2026-06-08 09:49:39 MarkDuplicates Tracking 943092 as yet unmatched pairs. 35423 records in RAM. INFO 2026-06-08 09:49:41 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr9:78,308,472 INFO 2026-06-08 09:49:41 MarkDuplicates Tracking 941443 as yet unmatched pairs. 33665 records in RAM. INFO 2026-06-08 09:49:43 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr9:87,706,228 INFO 2026-06-08 09:49:43 MarkDuplicates Tracking 938746 as yet unmatched pairs. 30870 records in RAM. INFO 2026-06-08 09:49:45 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr9:96,004,601 INFO 2026-06-08 09:49:45 MarkDuplicates Tracking 935163 as yet unmatched pairs. 27222 records in RAM. INFO 2026-06-08 09:49:47 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr9:107,323,950 INFO 2026-06-08 09:49:47 MarkDuplicates Tracking 932463 as yet unmatched pairs. 24437 records in RAM. INFO 2026-06-08 09:49:49 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr9:115,042,230 INFO 2026-06-08 09:49:49 MarkDuplicates Tracking 929547 as yet unmatched pairs. 21462 records in RAM. INFO 2026-06-08 09:49:51 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr9:124,880,457 INFO 2026-06-08 09:49:51 MarkDuplicates Tracking 926666 as yet unmatched pairs. 18498 records in RAM. INFO 2026-06-08 09:49:53 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr9:128,178,392 INFO 2026-06-08 09:49:53 MarkDuplicates Tracking 924109 as yet unmatched pairs. 15866 records in RAM. INFO 2026-06-08 09:49:55 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr9:129,890,327 INFO 2026-06-08 09:49:55 MarkDuplicates Tracking 920881 as yet unmatched pairs. 12583 records in RAM. INFO 2026-06-08 09:49:58 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr9:131,483,361 INFO 2026-06-08 09:49:58 MarkDuplicates Tracking 918703 as yet unmatched pairs. 10345 records in RAM. INFO 2026-06-08 09:50:00 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 2s. Last read position: chr9:134,701,174 INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 915809 as yet unmatched pairs. 7381 records in RAM. INFO 2026-06-08 09:50:01 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,721 INFO 2026-06-08 09:50:01 MarkDuplicates Tracking 912604 as yet unmatched pairs. 4129 records in RAM. INFO 2026-06-08 09:50:04 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 2s. Last read position: chr9:137,433,979 INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 909135 as yet unmatched pairs. 610 records in RAM. INFO 2026-06-08 09:50:06 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr10:5,772,553 INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 906929 as yet unmatched pairs. 56002 records in RAM. INFO 2026-06-08 09:50:09 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:16,505,040 INFO 2026-06-08 09:50:09 MarkDuplicates Tracking 903815 as yet unmatched pairs. 52808 records in RAM. INFO 2026-06-08 09:50:11 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 2s. Last read position: chr10:24,584,508 INFO 2026-06-08 09:50:11 MarkDuplicates Tracking 900841 as yet unmatched pairs. 49752 records in RAM. INFO 2026-06-08 09:50:13 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:31,527,121 INFO 2026-06-08 09:50:13 MarkDuplicates Tracking 898320 as yet unmatched pairs. 47156 records in RAM. INFO 2026-06-08 09:50:15 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr10:32,929,924 INFO 2026-06-08 09:50:15 MarkDuplicates Tracking 897502 as yet unmatched pairs. 46287 records in RAM. INFO 2026-06-08 09:50:17 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr10:45,651,983 INFO 2026-06-08 09:50:17 MarkDuplicates Tracking 893197 as yet unmatched pairs. 41884 records in RAM. INFO 2026-06-08 09:50:19 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:48,011,179 INFO 2026-06-08 09:50:19 MarkDuplicates Tracking 891343 as yet unmatched pairs. 39998 records in RAM. INFO 2026-06-08 09:50:21 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 2s. Last read position: chr10:58,796,338 INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 890298 as yet unmatched pairs. 38869 records in RAM. INFO 2026-06-08 09:50:23 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:60,138,991 INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 886689 as yet unmatched pairs. 35208 records in RAM. INFO 2026-06-08 09:50:25 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr10:69,257,035 INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 883977 as yet unmatched pairs. 32418 records in RAM. INFO 2026-06-08 09:50:27 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr10:73,539,571 INFO 2026-06-08 09:50:27 MarkDuplicates Tracking 881225 as yet unmatched pairs. 29582 records in RAM. INFO 2026-06-08 09:50:29 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,594 INFO 2026-06-08 09:50:29 MarkDuplicates Tracking 880937 as yet unmatched pairs. 29220 records in RAM. INFO 2026-06-08 09:50:31 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr10:86,679,399 INFO 2026-06-08 09:50:31 MarkDuplicates Tracking 876140 as yet unmatched pairs. 24373 records in RAM. INFO 2026-06-08 09:50:33 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr10:92,537,409 INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 873733 as yet unmatched pairs. 21890 records in RAM. INFO 2026-06-08 09:50:35 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr10:95,875,419 INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 870924 as yet unmatched pairs. 19030 records in RAM. INFO 2026-06-08 09:50:37 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr10:100,527,052 INFO 2026-06-08 09:50:37 MarkDuplicates Tracking 868614 as yet unmatched pairs. 16660 records in RAM. INFO 2026-06-08 09:50:39 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr10:102,488,248 INFO 2026-06-08 09:50:39 MarkDuplicates Tracking 865519 as yet unmatched pairs. 13532 records in RAM. INFO 2026-06-08 09:50:41 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:104,063,758 INFO 2026-06-08 09:50:41 MarkDuplicates Tracking 863280 as yet unmatched pairs. 11242 records in RAM. INFO 2026-06-08 09:50:44 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr10:116,911,799 INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 860557 as yet unmatched pairs. 8452 records in RAM. INFO 2026-06-08 09:50:45 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:121,485,399 INFO 2026-06-08 09:50:45 MarkDuplicates Tracking 858008 as yet unmatched pairs. 5846 records in RAM. INFO 2026-06-08 09:50:48 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 2s. Last read position: chr10:126,987,520 INFO 2026-06-08 09:50:48 MarkDuplicates Tracking 854715 as yet unmatched pairs. 2485 records in RAM. INFO 2026-06-08 09:50:51 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 3s. Last read position: chr11:309,063 INFO 2026-06-08 09:50:51 MarkDuplicates Tracking 856717 as yet unmatched pairs. 100666 records in RAM. INFO 2026-06-08 09:50:53 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:694,759 INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 848873 as yet unmatched pairs. 92769 records in RAM. INFO 2026-06-08 09:50:55 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr11:1,003,749 INFO 2026-06-08 09:50:55 MarkDuplicates Tracking 846217 as yet unmatched pairs. 90053 records in RAM. INFO 2026-06-08 09:50:57 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr11:2,396,637 INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 845870 as yet unmatched pairs. 89670 records in RAM. INFO 2026-06-08 09:50:59 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:6,682,218 INFO 2026-06-08 09:50:59 MarkDuplicates Tracking 840139 as yet unmatched pairs. 83889 records in RAM. INFO 2026-06-08 09:51:01 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr11:10,797,806 INFO 2026-06-08 09:51:01 MarkDuplicates Tracking 837447 as yet unmatched pairs. 81150 records in RAM. INFO 2026-06-08 09:51:03 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr11:14,483,140 INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 834528 as yet unmatched pairs. 78163 records in RAM. INFO 2026-06-08 09:51:05 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:18,402,898 INFO 2026-06-08 09:51:05 MarkDuplicates Tracking 834611 as yet unmatched pairs. 78180 records in RAM. INFO 2026-06-08 09:51:07 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr11:33,376,860 INFO 2026-06-08 09:51:07 MarkDuplicates Tracking 829148 as yet unmatched pairs. 72648 records in RAM. INFO 2026-06-08 09:51:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:46,300,060 INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 826551 as yet unmatched pairs. 69976 records in RAM. INFO 2026-06-08 09:51:11 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 2s. Last read position: chr11:47,472,266 INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 823998 as yet unmatched pairs. 67359 records in RAM. INFO 2026-06-08 09:51:14 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr11:57,600,048 INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 820858 as yet unmatched pairs. 64176 records in RAM. INFO 2026-06-08 09:51:16 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:60,900,895 INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 818352 as yet unmatched pairs. 61625 records in RAM. INFO 2026-06-08 09:51:18 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:62,517,273 INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 816595 as yet unmatched pairs. 59815 records in RAM. INFO 2026-06-08 09:51:20 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr11:62,528,723 INFO 2026-06-08 09:51:20 MarkDuplicates Tracking 814155 as yet unmatched pairs. 57344 records in RAM. INFO 2026-06-08 09:51:22 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:62,647,095 INFO 2026-06-08 09:51:22 MarkDuplicates Tracking 810528 as yet unmatched pairs. 53684 records in RAM. INFO 2026-06-08 09:51:24 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:64,224,051 INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 807846 as yet unmatched pairs. 50961 records in RAM. INFO 2026-06-08 09:51:26 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:65,111,498 INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 804748 as yet unmatched pairs. 47826 records in RAM. INFO 2026-06-08 09:51:28 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:65,623,951 INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 801277 as yet unmatched pairs. 44081 records in RAM. INFO 2026-06-08 09:51:30 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr11:66,063,064 INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 798540 as yet unmatched pairs. 41297 records in RAM. INFO 2026-06-08 09:51:32 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr11:67,308,263 INFO 2026-06-08 09:51:32 MarkDuplicates Tracking 794961 as yet unmatched pairs. 37655 records in RAM. INFO 2026-06-08 09:51:34 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr11:68,261,754 INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 791732 as yet unmatched pairs. 34395 records in RAM. INFO 2026-06-08 09:51:36 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:70,433,646 INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 788882 as yet unmatched pairs. 31503 records in RAM. INFO 2026-06-08 09:51:39 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr11:73,015,870 INFO 2026-06-08 09:51:39 MarkDuplicates Tracking 785628 as yet unmatched pairs. 28198 records in RAM. INFO 2026-06-08 09:51:41 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr11:76,352,761 INFO 2026-06-08 09:51:41 MarkDuplicates Tracking 782777 as yet unmatched pairs. 25287 records in RAM. INFO 2026-06-08 09:51:43 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr11:88,294,092 INFO 2026-06-08 09:51:43 MarkDuplicates Tracking 781988 as yet unmatched pairs. 24436 records in RAM. INFO 2026-06-08 09:51:45 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr11:96,341,502 INFO 2026-06-08 09:51:45 MarkDuplicates Tracking 777713 as yet unmatched pairs. 20074 records in RAM. INFO 2026-06-08 09:51:47 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr11:108,490,985 INFO 2026-06-08 09:51:47 MarkDuplicates Tracking 774849 as yet unmatched pairs. 17135 records in RAM. INFO 2026-06-08 09:51:49 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:117,144,393 INFO 2026-06-08 09:51:49 MarkDuplicates Tracking 772273 as yet unmatched pairs. 14485 records in RAM. INFO 2026-06-08 09:51:51 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr11:118,472,964 INFO 2026-06-08 09:51:51 MarkDuplicates Tracking 769571 as yet unmatched pairs. 11732 records in RAM. INFO 2026-06-08 09:51:53 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr11:119,051,910 INFO 2026-06-08 09:51:53 MarkDuplicates Tracking 766715 as yet unmatched pairs. 8840 records in RAM. INFO 2026-06-08 09:51:55 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:123,059,693 INFO 2026-06-08 09:51:55 MarkDuplicates Tracking 766754 as yet unmatched pairs. 8832 records in RAM. INFO 2026-06-08 09:51:57 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr11:129,878,501 INFO 2026-06-08 09:51:57 MarkDuplicates Tracking 761034 as yet unmatched pairs. 3065 records in RAM. INFO 2026-06-08 09:51:59 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:134,253,635 INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 758138 as yet unmatched pairs. 131 records in RAM. INFO 2026-06-08 09:52:02 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 3s. Last read position: chr12:1,027,827 INFO 2026-06-08 09:52:02 MarkDuplicates Tracking 755773 as yet unmatched pairs. 88686 records in RAM. INFO 2026-06-08 09:52:04 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr12:6,386,344 INFO 2026-06-08 09:52:04 MarkDuplicates Tracking 753093 as yet unmatched pairs. 85923 records in RAM. INFO 2026-06-08 09:52:06 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:6,945,769 INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 749840 as yet unmatched pairs. 82624 records in RAM. INFO 2026-06-08 09:52:08 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr12:8,660,908 INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 747598 as yet unmatched pairs. 80349 records in RAM. INFO 2026-06-08 09:52:10 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:10,220,443 INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 745468 as yet unmatched pairs. 78123 records in RAM. INFO 2026-06-08 09:52:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr12:14,794,501 INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 741958 as yet unmatched pairs. 74551 records in RAM. INFO 2026-06-08 09:52:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr12:24,866,925 INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 741900 as yet unmatched pairs. 74430 records in RAM. INFO 2026-06-08 09:52:16 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:31,399,667 INFO 2026-06-08 09:52:16 MarkDuplicates Tracking 736559 as yet unmatched pairs. 69011 records in RAM. INFO 2026-06-08 09:52:18 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr12:39,331,730 INFO 2026-06-08 09:52:18 MarkDuplicates Tracking 734010 as yet unmatched pairs. 66378 records in RAM. INFO 2026-06-08 09:52:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 2s. Last read position: chr12:47,669,049 INFO 2026-06-08 09:52:21 MarkDuplicates Tracking 731528 as yet unmatched pairs. 63822 records in RAM. INFO 2026-06-08 09:52:23 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:49,052,259 INFO 2026-06-08 09:52:23 MarkDuplicates Tracking 728584 as yet unmatched pairs. 60838 records in RAM. INFO 2026-06-08 09:52:25 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:49,963,560 INFO 2026-06-08 09:52:25 MarkDuplicates Tracking 726501 as yet unmatched pairs. 58729 records in RAM. INFO 2026-06-08 09:52:26 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:52,238,702 INFO 2026-06-08 09:52:26 MarkDuplicates Tracking 724126 as yet unmatched pairs. 56306 records in RAM. INFO 2026-06-08 09:52:29 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr12:53,443,721 INFO 2026-06-08 09:52:29 MarkDuplicates Tracking 721043 as yet unmatched pairs. 53189 records in RAM. INFO 2026-06-08 09:52:31 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr12:54,283,907 INFO 2026-06-08 09:52:31 MarkDuplicates Tracking 719803 as yet unmatched pairs. 51912 records in RAM. INFO 2026-06-08 09:52:33 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:56,111,474 INFO 2026-06-08 09:52:33 MarkDuplicates Tracking 715568 as yet unmatched pairs. 47649 records in RAM. INFO 2026-06-08 09:52:35 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:56,638,295 INFO 2026-06-08 09:52:35 MarkDuplicates Tracking 715290 as yet unmatched pairs. 47337 records in RAM. INFO 2026-06-08 09:52:37 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr12:57,141,464 INFO 2026-06-08 09:52:37 MarkDuplicates Tracking 710743 as yet unmatched pairs. 42749 records in RAM. INFO 2026-06-08 09:52:39 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,466,353 INFO 2026-06-08 09:52:39 MarkDuplicates Tracking 707023 as yet unmatched pairs. 38999 records in RAM. INFO 2026-06-08 09:52:41 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr12:64,430,055 INFO 2026-06-08 09:52:41 MarkDuplicates Tracking 704512 as yet unmatched pairs. 36441 records in RAM. INFO 2026-06-08 09:52:43 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:69,812,824 INFO 2026-06-08 09:52:43 MarkDuplicates Tracking 701866 as yet unmatched pairs. 33740 records in RAM. INFO 2026-06-08 09:52:45 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 2s. Last read position: chr12:91,055,756 INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 699116 as yet unmatched pairs. 30942 records in RAM. INFO 2026-06-08 09:52:47 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr12:96,009,104 INFO 2026-06-08 09:52:47 MarkDuplicates Tracking 697002 as yet unmatched pairs. 28795 records in RAM. INFO 2026-06-08 09:52:49 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:103,934,055 INFO 2026-06-08 09:52:49 MarkDuplicates Tracking 695417 as yet unmatched pairs. 27190 records in RAM. INFO 2026-06-08 09:52:51 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr12:105,366,635 INFO 2026-06-08 09:52:51 MarkDuplicates Tracking 703181 as yet unmatched pairs. 34915 records in RAM. INFO 2026-06-08 09:52:53 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:110,327,643 INFO 2026-06-08 09:52:53 MarkDuplicates Tracking 689660 as yet unmatched pairs. 21338 records in RAM. INFO 2026-06-08 09:52:55 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,207 INFO 2026-06-08 09:52:55 MarkDuplicates Tracking 686818 as yet unmatched pairs. 18450 records in RAM. INFO 2026-06-08 09:52:57 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr12:113,927,113 INFO 2026-06-08 09:52:57 MarkDuplicates Tracking 683224 as yet unmatched pairs. 14811 records in RAM. INFO 2026-06-08 09:52:59 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr12:120,197,343 INFO 2026-06-08 09:52:59 MarkDuplicates Tracking 682300 as yet unmatched pairs. 13832 records in RAM. INFO 2026-06-08 09:53:01 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr12:121,823,184 INFO 2026-06-08 09:53:01 MarkDuplicates Tracking 677809 as yet unmatched pairs. 9285 records in RAM. INFO 2026-06-08 09:53:03 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr12:123,533,320 INFO 2026-06-08 09:53:03 MarkDuplicates Tracking 674841 as yet unmatched pairs. 6282 records in RAM. INFO 2026-06-08 09:53:05 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr12:126,873,535 INFO 2026-06-08 09:53:05 MarkDuplicates Tracking 672010 as yet unmatched pairs. 3404 records in RAM. INFO 2026-06-08 09:53:07 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr12:133,010,823 INFO 2026-06-08 09:53:07 MarkDuplicates Tracking 669061 as yet unmatched pairs. 404 records in RAM. INFO 2026-06-08 09:53:10 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr13:20,988,839 INFO 2026-06-08 09:53:10 MarkDuplicates Tracking 666642 as yet unmatched pairs. 36029 records in RAM. INFO 2026-06-08 09:53:12 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr13:25,338,638 INFO 2026-06-08 09:53:12 MarkDuplicates Tracking 663761 as yet unmatched pairs. 32969 records in RAM. INFO 2026-06-08 09:53:14 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr13:35,774,480 INFO 2026-06-08 09:53:14 MarkDuplicates Tracking 660966 as yet unmatched pairs. 30105 records in RAM. INFO 2026-06-08 09:53:16 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr13:40,559,873 INFO 2026-06-08 09:53:16 MarkDuplicates Tracking 660158 as yet unmatched pairs. 29254 records in RAM. INFO 2026-06-08 09:53:18 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr13:45,338,764 INFO 2026-06-08 09:53:18 MarkDuplicates Tracking 659748 as yet unmatched pairs. 28789 records in RAM. INFO 2026-06-08 09:53:20 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr13:48,261,156 INFO 2026-06-08 09:53:20 MarkDuplicates Tracking 654285 as yet unmatched pairs. 23302 records in RAM. INFO 2026-06-08 09:53:22 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr13:73,075,708 INFO 2026-06-08 09:53:22 MarkDuplicates Tracking 650726 as yet unmatched pairs. 19650 records in RAM. INFO 2026-06-08 09:53:24 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr13:97,356,815 INFO 2026-06-08 09:53:24 MarkDuplicates Tracking 647950 as yet unmatched pairs. 16820 records in RAM. INFO 2026-06-08 09:53:26 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr13:100,664,220 INFO 2026-06-08 09:53:26 MarkDuplicates Tracking 644825 as yet unmatched pairs. 13621 records in RAM. INFO 2026-06-08 09:53:28 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr13:110,205,367 INFO 2026-06-08 09:53:28 MarkDuplicates Tracking 642450 as yet unmatched pairs. 11136 records in RAM. INFO 2026-06-08 09:53:30 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr13:110,458,899 INFO 2026-06-08 09:53:30 MarkDuplicates Tracking 640497 as yet unmatched pairs. 9149 records in RAM. INFO 2026-06-08 09:53:32 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 2s. Last read position: chr13:110,914,796 INFO 2026-06-08 09:53:32 MarkDuplicates Tracking 635813 as yet unmatched pairs. 4404 records in RAM. INFO 2026-06-08 09:53:34 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr13:113,539,465 INFO 2026-06-08 09:53:34 MarkDuplicates Tracking 632136 as yet unmatched pairs. 662 records in RAM. INFO 2026-06-08 09:53:37 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr14:21,461,240 INFO 2026-06-08 09:53:37 MarkDuplicates Tracking 629517 as yet unmatched pairs. 49565 records in RAM. INFO 2026-06-08 09:53:39 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:23,384,442 INFO 2026-06-08 09:53:39 MarkDuplicates Tracking 626545 as yet unmatched pairs. 46563 records in RAM. INFO 2026-06-08 09:53:41 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr14:26,448,748 INFO 2026-06-08 09:53:41 MarkDuplicates Tracking 623578 as yet unmatched pairs. 43558 records in RAM. INFO 2026-06-08 09:53:43 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr14:35,808,754 INFO 2026-06-08 09:53:43 MarkDuplicates Tracking 621181 as yet unmatched pairs. 41130 records in RAM. INFO 2026-06-08 09:53:45 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr14:50,739,328 INFO 2026-06-08 09:53:45 MarkDuplicates Tracking 618665 as yet unmatched pairs. 38528 records in RAM. INFO 2026-06-08 09:53:48 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr14:55,145,142 INFO 2026-06-08 09:53:48 MarkDuplicates Tracking 616323 as yet unmatched pairs. 36154 records in RAM. INFO 2026-06-08 09:53:49 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr14:63,422,024 INFO 2026-06-08 09:53:49 MarkDuplicates Tracking 613351 as yet unmatched pairs. 33133 records in RAM. INFO 2026-06-08 09:53:52 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr14:64,053,596 INFO 2026-06-08 09:53:52 MarkDuplicates Tracking 611475 as yet unmatched pairs. 31222 records in RAM. INFO 2026-06-08 09:53:54 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr14:64,212,869 INFO 2026-06-08 09:53:54 MarkDuplicates Tracking 609514 as yet unmatched pairs. 29227 records in RAM. INFO 2026-06-08 09:53:56 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 2s. Last read position: chr14:67,777,580 INFO 2026-06-08 09:53:56 MarkDuplicates Tracking 605330 as yet unmatched pairs. 25006 records in RAM. INFO 2026-06-08 09:53:58 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr14:73,110,927 INFO 2026-06-08 09:53:58 MarkDuplicates Tracking 602775 as yet unmatched pairs. 22389 records in RAM. INFO 2026-06-08 09:54:00 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr14:74,797,581 INFO 2026-06-08 09:54:00 MarkDuplicates Tracking 599878 as yet unmatched pairs. 19468 records in RAM. INFO 2026-06-08 09:54:02 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr14:77,578,989 INFO 2026-06-08 09:54:02 MarkDuplicates Tracking 597558 as yet unmatched pairs. 17107 records in RAM. INFO 2026-06-08 09:54:04 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 2s. Last read position: chr14:92,615,448 INFO 2026-06-08 09:54:04 MarkDuplicates Tracking 594328 as yet unmatched pairs. 13820 records in RAM. INFO 2026-06-08 09:54:06 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr14:96,532,516 INFO 2026-06-08 09:54:06 MarkDuplicates Tracking 594385 as yet unmatched pairs. 13848 records in RAM. INFO 2026-06-08 09:54:08 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr14:102,008,193 INFO 2026-06-08 09:54:08 MarkDuplicates Tracking 589034 as yet unmatched pairs. 8431 records in RAM. INFO 2026-06-08 09:54:10 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:103,335,864 INFO 2026-06-08 09:54:10 MarkDuplicates Tracking 585778 as yet unmatched pairs. 5140 records in RAM. INFO 2026-06-08 09:54:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr14:104,947,651 INFO 2026-06-08 09:54:12 MarkDuplicates Tracking 582840 as yet unmatched pairs. 2168 records in RAM. INFO 2026-06-08 09:54:15 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 2s. Last read position: chr15:22,947,218 INFO 2026-06-08 09:54:15 MarkDuplicates Tracking 580027 as yet unmatched pairs. 50778 records in RAM. INFO 2026-06-08 09:54:16 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:30,958,939 INFO 2026-06-08 09:54:16 MarkDuplicates Tracking 578019 as yet unmatched pairs. 48723 records in RAM. INFO 2026-06-08 09:54:18 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr15:40,036,418 INFO 2026-06-08 09:54:18 MarkDuplicates Tracking 575554 as yet unmatched pairs. 46229 records in RAM. INFO 2026-06-08 09:54:20 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr15:41,760,484 INFO 2026-06-08 09:54:20 MarkDuplicates Tracking 572618 as yet unmatched pairs. 43266 records in RAM. INFO 2026-06-08 09:54:22 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr15:43,526,437 INFO 2026-06-08 09:54:22 MarkDuplicates Tracking 569608 as yet unmatched pairs. 40230 records in RAM. INFO 2026-06-08 09:54:25 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr15:44,490,965 INFO 2026-06-08 09:54:25 MarkDuplicates Tracking 567097 as yet unmatched pairs. 37702 records in RAM. INFO 2026-06-08 09:54:26 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr15:48,878,225 INFO 2026-06-08 09:54:26 MarkDuplicates Tracking 565016 as yet unmatched pairs. 35595 records in RAM. INFO 2026-06-08 09:54:29 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 2s. Last read position: chr15:53,616,024 INFO 2026-06-08 09:54:29 MarkDuplicates Tracking 561799 as yet unmatched pairs. 32341 records in RAM. INFO 2026-06-08 09:54:31 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 2s. Last read position: chr15:59,076,083 INFO 2026-06-08 09:54:31 MarkDuplicates Tracking 559009 as yet unmatched pairs. 29530 records in RAM. INFO 2026-06-08 09:54:33 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr15:62,697,731 INFO 2026-06-08 09:54:33 MarkDuplicates Tracking 556131 as yet unmatched pairs. 26606 records in RAM. INFO 2026-06-08 09:54:35 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 2s. Last read position: chr15:65,196,743 INFO 2026-06-08 09:54:35 MarkDuplicates Tracking 553511 as yet unmatched pairs. 23946 records in RAM. INFO 2026-06-08 09:54:37 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr15:69,446,920 INFO 2026-06-08 09:54:37 MarkDuplicates Tracking 550485 as yet unmatched pairs. 20877 records in RAM. INFO 2026-06-08 09:54:39 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr15:71,898,401 INFO 2026-06-08 09:54:39 MarkDuplicates Tracking 548166 as yet unmatched pairs. 18517 records in RAM. INFO 2026-06-08 09:54:41 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr15:73,998,463 INFO 2026-06-08 09:54:41 MarkDuplicates Tracking 545144 as yet unmatched pairs. 15457 records in RAM. INFO 2026-06-08 09:54:43 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr15:75,690,676 INFO 2026-06-08 09:54:43 MarkDuplicates Tracking 541830 as yet unmatched pairs. 12124 records in RAM. INFO 2026-06-08 09:54:45 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr15:82,434,353 INFO 2026-06-08 09:54:45 MarkDuplicates Tracking 539365 as yet unmatched pairs. 9613 records in RAM. INFO 2026-06-08 09:54:47 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr15:88,465,650 INFO 2026-06-08 09:54:47 MarkDuplicates Tracking 537112 as yet unmatched pairs. 7339 records in RAM. INFO 2026-06-08 09:54:48 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr15:90,484,222 INFO 2026-06-08 09:54:48 MarkDuplicates Tracking 534330 as yet unmatched pairs. 4528 records in RAM. INFO 2026-06-08 09:54:50 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr15:99,130,142 INFO 2026-06-08 09:54:50 MarkDuplicates Tracking 531079 as yet unmatched pairs. 1242 records in RAM. INFO 2026-06-08 09:54:53 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 2s. Last read position: chr16:575,947 INFO 2026-06-08 09:54:53 MarkDuplicates Tracking 527841 as yet unmatched pairs. 79223 records in RAM. INFO 2026-06-08 09:54:55 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr16:1,691,866 INFO 2026-06-08 09:54:55 MarkDuplicates Tracking 525163 as yet unmatched pairs. 76523 records in RAM. INFO 2026-06-08 09:54:57 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 2s. Last read position: chr16:2,112,439 INFO 2026-06-08 09:54:57 MarkDuplicates Tracking 520940 as yet unmatched pairs. 72268 records in RAM. INFO 2026-06-08 09:54:59 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr16:2,764,578 INFO 2026-06-08 09:54:59 MarkDuplicates Tracking 518391 as yet unmatched pairs. 69692 records in RAM. INFO 2026-06-08 09:55:01 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr16:3,658,209 INFO 2026-06-08 09:55:01 MarkDuplicates Tracking 515070 as yet unmatched pairs. 66352 records in RAM. INFO 2026-06-08 09:55:03 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:4,874,162 INFO 2026-06-08 09:55:03 MarkDuplicates Tracking 511954 as yet unmatched pairs. 63211 records in RAM. INFO 2026-06-08 09:55:05 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr16:11,915,502 INFO 2026-06-08 09:55:05 MarkDuplicates Tracking 508881 as yet unmatched pairs. 60098 records in RAM. INFO 2026-06-08 09:55:07 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr16:14,924,073 INFO 2026-06-08 09:55:07 MarkDuplicates Tracking 507037 as yet unmatched pairs. 58236 records in RAM. INFO 2026-06-08 09:55:09 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr16:16,280,248 INFO 2026-06-08 09:55:09 MarkDuplicates Tracking 504995 as yet unmatched pairs. 56170 records in RAM. INFO 2026-06-08 09:55:10 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,394,804 INFO 2026-06-08 09:55:10 MarkDuplicates Tracking 504310 as yet unmatched pairs. 55476 records in RAM. INFO 2026-06-08 09:55:12 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:19,764,097 INFO 2026-06-08 09:55:12 MarkDuplicates Tracking 502268 as yet unmatched pairs. 53411 records in RAM. INFO 2026-06-08 09:55:14 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,467,113 INFO 2026-06-08 09:55:14 MarkDuplicates Tracking 501552 as yet unmatched pairs. 52690 records in RAM. INFO 2026-06-08 09:55:16 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr16:21,980,544 INFO 2026-06-08 09:55:16 MarkDuplicates Tracking 500059 as yet unmatched pairs. 51177 records in RAM. INFO 2026-06-08 09:55:17 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,928 INFO 2026-06-08 09:55:17 MarkDuplicates Tracking 498978 as yet unmatched pairs. 50082 records in RAM. INFO 2026-06-08 09:55:19 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr16:28,106,097 INFO 2026-06-08 09:55:19 MarkDuplicates Tracking 496563 as yet unmatched pairs. 47621 records in RAM. INFO 2026-06-08 09:55:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr16:28,866,494 INFO 2026-06-08 09:55:21 MarkDuplicates Tracking 494128 as yet unmatched pairs. 45174 records in RAM. INFO 2026-06-08 09:55:23 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,333 INFO 2026-06-08 09:55:23 MarkDuplicates Tracking 493645 as yet unmatched pairs. 44680 records in RAM. INFO 2026-06-08 09:55:25 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,064,206 INFO 2026-06-08 09:55:25 MarkDuplicates Tracking 490559 as yet unmatched pairs. 41581 records in RAM. INFO 2026-06-08 09:55:26 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr16:30,231,450 INFO 2026-06-08 09:55:26 MarkDuplicates Tracking 488456 as yet unmatched pairs. 39461 records in RAM. INFO 2026-06-08 09:55:28 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr16:30,953,514 INFO 2026-06-08 09:55:28 MarkDuplicates Tracking 485708 as yet unmatched pairs. 36688 records in RAM. INFO 2026-06-08 09:55:30 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 2s. Last read position: chr16:31,190,053 INFO 2026-06-08 09:55:30 MarkDuplicates Tracking 483961 as yet unmatched pairs. 34907 records in RAM. INFO 2026-06-08 09:55:32 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr16:50,304,499 INFO 2026-06-08 09:55:32 MarkDuplicates Tracking 480240 as yet unmatched pairs. 31159 records in RAM. INFO 2026-06-08 09:55:34 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr16:56,666,817 INFO 2026-06-08 09:55:34 MarkDuplicates Tracking 478686 as yet unmatched pairs. 29577 records in RAM. INFO 2026-06-08 09:55:36 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr16:58,555,878 INFO 2026-06-08 09:55:36 MarkDuplicates Tracking 474970 as yet unmatched pairs. 25846 records in RAM. INFO 2026-06-08 09:55:38 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr16:67,828,200 INFO 2026-06-08 09:55:38 MarkDuplicates Tracking 471120 as yet unmatched pairs. 21977 records in RAM. INFO 2026-06-08 09:55:40 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr16:69,120,243 INFO 2026-06-08 09:55:40 MarkDuplicates Tracking 468560 as yet unmatched pairs. 19395 records in RAM. INFO 2026-06-08 09:55:42 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr16:70,529,051 INFO 2026-06-08 09:55:42 MarkDuplicates Tracking 465844 as yet unmatched pairs. 16650 records in RAM. INFO 2026-06-08 09:55:44 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,855 INFO 2026-06-08 09:55:44 MarkDuplicates Tracking 463408 as yet unmatched pairs. 14185 records in RAM. INFO 2026-06-08 09:55:46 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr16:83,809,311 INFO 2026-06-08 09:55:46 MarkDuplicates Tracking 459978 as yet unmatched pairs. 10720 records in RAM. INFO 2026-06-08 09:55:48 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 1s. Last read position: chr16:88,429,216 INFO 2026-06-08 09:55:48 MarkDuplicates Tracking 456868 as yet unmatched pairs. 7573 records in RAM. INFO 2026-06-08 09:55:50 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr16:88,835,758 INFO 2026-06-08 09:55:50 MarkDuplicates Tracking 453388 as yet unmatched pairs. 4067 records in RAM. INFO 2026-06-08 09:55:52 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr16:89,910,617 INFO 2026-06-08 09:55:52 MarkDuplicates Tracking 451177 as yet unmatched pairs. 1830 records in RAM. INFO 2026-06-08 09:55:56 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 3s. Last read position: chr17:1,364,931 INFO 2026-06-08 09:55:56 MarkDuplicates Tracking 454093 as yet unmatched pairs. 154030 records in RAM. INFO 2026-06-08 09:55:58 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr17:1,800,293 INFO 2026-06-08 09:55:58 MarkDuplicates Tracking 444426 as yet unmatched pairs. 144351 records in RAM. INFO 2026-06-08 09:56:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr17:4,533,249 INFO 2026-06-08 09:56:00 MarkDuplicates Tracking 441374 as yet unmatched pairs. 141279 records in RAM. INFO 2026-06-08 09:56:02 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr17:5,433,292 INFO 2026-06-08 09:56:02 MarkDuplicates Tracking 438725 as yet unmatched pairs. 138609 records in RAM. INFO 2026-06-08 09:56:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,184 INFO 2026-06-08 09:56:04 MarkDuplicates Tracking 435497 as yet unmatched pairs. 135369 records in RAM. INFO 2026-06-08 09:56:06 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr17:7,594,236 INFO 2026-06-08 09:56:06 MarkDuplicates Tracking 433047 as yet unmatched pairs. 132908 records in RAM. INFO 2026-06-08 09:56:08 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 2s. Last read position: chr17:8,377,613 INFO 2026-06-08 09:56:08 MarkDuplicates Tracking 432583 as yet unmatched pairs. 132428 records in RAM. INFO 2026-06-08 09:56:10 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 1s. Last read position: chr17:11,983,312 INFO 2026-06-08 09:56:10 MarkDuplicates Tracking 427507 as yet unmatched pairs. 127333 records in RAM. INFO 2026-06-08 09:56:12 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 2s. Last read position: chr17:17,158,990 INFO 2026-06-08 09:56:12 MarkDuplicates Tracking 425840 as yet unmatched pairs. 125640 records in RAM. INFO 2026-06-08 09:56:14 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr17:19,347,085 INFO 2026-06-08 09:56:14 MarkDuplicates Tracking 421778 as yet unmatched pairs. 121554 records in RAM. INFO 2026-06-08 09:56:16 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:28,638,038 INFO 2026-06-08 09:56:16 MarkDuplicates Tracking 419164 as yet unmatched pairs. 118930 records in RAM. INFO 2026-06-08 09:56:18 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 2s. Last read position: chr17:29,568,739 INFO 2026-06-08 09:56:18 MarkDuplicates Tracking 416233 as yet unmatched pairs. 115982 records in RAM. INFO 2026-06-08 09:56:20 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr17:31,988,388 INFO 2026-06-08 09:56:20 MarkDuplicates Tracking 415052 as yet unmatched pairs. 114771 records in RAM. INFO 2026-06-08 09:56:22 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chr17:35,846,927 INFO 2026-06-08 09:56:22 MarkDuplicates Tracking 411466 as yet unmatched pairs. 111162 records in RAM. INFO 2026-06-08 09:56:24 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr17:38,138,108 INFO 2026-06-08 09:56:24 MarkDuplicates Tracking 408905 as yet unmatched pairs. 108589 records in RAM. INFO 2026-06-08 09:56:26 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr17:39,201,247 INFO 2026-06-08 09:56:26 MarkDuplicates Tracking 408527 as yet unmatched pairs. 108200 records in RAM. INFO 2026-06-08 09:58:37 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 131s. Last read position: chr17:39,715,471 INFO 2026-06-08 09:58:37 MarkDuplicates Tracking 404948 as yet unmatched pairs. 104601 records in RAM. INFO 2026-06-08 09:58:39 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:40,129,473 INFO 2026-06-08 09:58:39 MarkDuplicates Tracking 400424 as yet unmatched pairs. 100067 records in RAM. INFO 2026-06-08 09:58:41 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr17:41,771,692 INFO 2026-06-08 09:58:41 MarkDuplicates Tracking 398136 as yet unmatched pairs. 97768 records in RAM. INFO 2026-06-08 09:58:44 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr17:42,671,358 INFO 2026-06-08 09:58:44 MarkDuplicates Tracking 394131 as yet unmatched pairs. 93742 records in RAM. INFO 2026-06-08 09:58:45 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr17:44,194,302 INFO 2026-06-08 09:58:45 MarkDuplicates Tracking 391283 as yet unmatched pairs. 90880 records in RAM. INFO 2026-06-08 09:58:48 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr17:45,585,905 INFO 2026-06-08 09:58:48 MarkDuplicates Tracking 388323 as yet unmatched pairs. 87886 records in RAM. INFO 2026-06-08 09:58:49 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:47,586,219 INFO 2026-06-08 09:58:49 MarkDuplicates Tracking 386481 as yet unmatched pairs. 86032 records in RAM. INFO 2026-06-08 09:58:51 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:49,701,439 INFO 2026-06-08 09:58:51 MarkDuplicates Tracking 383419 as yet unmatched pairs. 82945 records in RAM. INFO 2026-06-08 09:58:53 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,903 INFO 2026-06-08 09:58:53 MarkDuplicates Tracking 385855 as yet unmatched pairs. 85369 records in RAM. INFO 2026-06-08 09:58:55 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,757 INFO 2026-06-08 09:58:55 MarkDuplicates Tracking 384722 as yet unmatched pairs. 84224 records in RAM. INFO 2026-06-08 09:58:58 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,517 INFO 2026-06-08 09:58:58 MarkDuplicates Tracking 386299 as yet unmatched pairs. 85782 records in RAM. INFO 2026-06-08 09:59:00 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,759 INFO 2026-06-08 09:59:00 MarkDuplicates Tracking 382075 as yet unmatched pairs. 81549 records in RAM. INFO 2026-06-08 09:59:02 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,491 INFO 2026-06-08 09:59:02 MarkDuplicates Tracking 381802 as yet unmatched pairs. 81264 records in RAM. INFO 2026-06-08 09:59:04 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,326 INFO 2026-06-08 09:59:04 MarkDuplicates Tracking 388304 as yet unmatched pairs. 87747 records in RAM. INFO 2026-06-08 09:59:06 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,474 INFO 2026-06-08 09:59:06 MarkDuplicates Tracking 371551 as yet unmatched pairs. 70981 records in RAM. INFO 2026-06-08 09:59:08 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,015 INFO 2026-06-08 09:59:08 MarkDuplicates Tracking 375162 as yet unmatched pairs. 74579 records in RAM. INFO 2026-06-08 09:59:10 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,721 INFO 2026-06-08 09:59:10 MarkDuplicates Tracking 368838 as yet unmatched pairs. 68234 records in RAM. INFO 2026-06-08 09:59:13 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,599 INFO 2026-06-08 09:59:13 MarkDuplicates Tracking 374396 as yet unmatched pairs. 73778 records in RAM. INFO 2026-06-08 09:59:15 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,347 INFO 2026-06-08 09:59:15 MarkDuplicates Tracking 380669 as yet unmatched pairs. 80042 records in RAM. INFO 2026-06-08 09:59:17 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,749 INFO 2026-06-08 09:59:17 MarkDuplicates Tracking 366878 as yet unmatched pairs. 66233 records in RAM. INFO 2026-06-08 09:59:19 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,298 INFO 2026-06-08 09:59:19 MarkDuplicates Tracking 352314 as yet unmatched pairs. 51657 records in RAM. INFO 2026-06-08 09:59:21 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 2s. Last read position: chr17:50,201,411 INFO 2026-06-08 09:59:21 MarkDuplicates Tracking 347457 as yet unmatched pairs. 46788 records in RAM. INFO 2026-06-08 09:59:23 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr17:56,899,146 INFO 2026-06-08 09:59:23 MarkDuplicates Tracking 336202 as yet unmatched pairs. 35522 records in RAM. INFO 2026-06-08 09:59:25 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 2s. Last read position: chr17:59,664,839 INFO 2026-06-08 09:59:25 MarkDuplicates Tracking 336489 as yet unmatched pairs. 35785 records in RAM. INFO 2026-06-08 09:59:27 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr17:60,447,647 INFO 2026-06-08 09:59:27 MarkDuplicates Tracking 330725 as yet unmatched pairs. 30006 records in RAM. INFO 2026-06-08 09:59:29 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:63,826,268 INFO 2026-06-08 09:59:29 MarkDuplicates Tracking 327805 as yet unmatched pairs. 27065 records in RAM. INFO 2026-06-08 09:59:31 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr17:67,893,575 INFO 2026-06-08 09:59:31 MarkDuplicates Tracking 325386 as yet unmatched pairs. 24620 records in RAM. INFO 2026-06-08 09:59:33 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr17:69,035,799 INFO 2026-06-08 09:59:33 MarkDuplicates Tracking 322716 as yet unmatched pairs. 21935 records in RAM. INFO 2026-06-08 09:59:35 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr17:75,243,117 INFO 2026-06-08 09:59:35 MarkDuplicates Tracking 319849 as yet unmatched pairs. 19039 records in RAM. INFO 2026-06-08 09:59:37 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr17:76,009,571 INFO 2026-06-08 09:59:37 MarkDuplicates Tracking 316544 as yet unmatched pairs. 15722 records in RAM. INFO 2026-06-08 09:59:39 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr17:78,358,616 INFO 2026-06-08 09:59:39 MarkDuplicates Tracking 313720 as yet unmatched pairs. 12880 records in RAM. INFO 2026-06-08 09:59:41 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr17:80,373,047 INFO 2026-06-08 09:59:41 MarkDuplicates Tracking 310508 as yet unmatched pairs. 9659 records in RAM. INFO 2026-06-08 09:59:43 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr17:81,700,698 INFO 2026-06-08 09:59:43 MarkDuplicates Tracking 307464 as yet unmatched pairs. 6587 records in RAM. INFO 2026-06-08 09:59:45 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr17:82,059,975 INFO 2026-06-08 09:59:45 MarkDuplicates Tracking 304165 as yet unmatched pairs. 3273 records in RAM. INFO 2026-06-08 09:59:48 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr18:197,663 INFO 2026-06-08 09:59:48 MarkDuplicates Tracking 301044 as yet unmatched pairs. 17551 records in RAM. INFO 2026-06-08 09:59:50 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr18:9,182,380 INFO 2026-06-08 09:59:50 MarkDuplicates Tracking 298333 as yet unmatched pairs. 14817 records in RAM. INFO 2026-06-08 09:59:52 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr18:23,479,386 INFO 2026-06-08 09:59:52 MarkDuplicates Tracking 295548 as yet unmatched pairs. 11994 records in RAM. INFO 2026-06-08 09:59:53 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr18:34,863,984 INFO 2026-06-08 09:59:53 MarkDuplicates Tracking 292665 as yet unmatched pairs. 9095 records in RAM. INFO 2026-06-08 09:59:56 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr18:49,490,825 INFO 2026-06-08 09:59:56 MarkDuplicates Tracking 293030 as yet unmatched pairs. 9437 records in RAM. INFO 2026-06-08 09:59:57 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr18:59,355,626 INFO 2026-06-08 09:59:57 MarkDuplicates Tracking 287424 as yet unmatched pairs. 3805 records in RAM. INFO 2026-06-08 10:00:00 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 2s. Last read position: chr18:79,176,857 INFO 2026-06-08 10:00:00 MarkDuplicates Tracking 284302 as yet unmatched pairs. 649 records in RAM. INFO 2026-06-08 10:00:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 3s. Last read position: chr19:964,951 INFO 2026-06-08 10:00:03 MarkDuplicates Tracking 280935 as yet unmatched pairs. 113925 records in RAM. INFO 2026-06-08 10:00:05 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:1,269,399 INFO 2026-06-08 10:00:05 MarkDuplicates Tracking 278051 as yet unmatched pairs. 111033 records in RAM. INFO 2026-06-08 10:00:07 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr19:2,109,885 INFO 2026-06-08 10:00:07 MarkDuplicates Tracking 274096 as yet unmatched pairs. 107067 records in RAM. INFO 2026-06-08 10:00:09 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr19:3,576,900 INFO 2026-06-08 10:00:09 MarkDuplicates Tracking 270553 as yet unmatched pairs. 103515 records in RAM. INFO 2026-06-08 10:00:11 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:5,110,689 INFO 2026-06-08 10:00:11 MarkDuplicates Tracking 267426 as yet unmatched pairs. 100374 records in RAM. INFO 2026-06-08 10:00:13 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 2s. Last read position: chr19:6,422,340 INFO 2026-06-08 10:00:13 MarkDuplicates Tracking 264364 as yet unmatched pairs. 97304 records in RAM. INFO 2026-06-08 10:00:15 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr19:7,625,958 INFO 2026-06-08 10:00:15 MarkDuplicates Tracking 260985 as yet unmatched pairs. 93921 records in RAM. INFO 2026-06-08 10:00:17 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 2s. Last read position: chr19:8,973,381 INFO 2026-06-08 10:00:17 MarkDuplicates Tracking 257643 as yet unmatched pairs. 90570 records in RAM. INFO 2026-06-08 10:00:19 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr19:10,632,114 INFO 2026-06-08 10:00:19 MarkDuplicates Tracking 255059 as yet unmatched pairs. 87983 records in RAM. INFO 2026-06-08 10:00:21 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:11,060,111 INFO 2026-06-08 10:00:21 MarkDuplicates Tracking 251804 as yet unmatched pairs. 84716 records in RAM. INFO 2026-06-08 10:00:23 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr19:12,665,703 INFO 2026-06-08 10:00:23 MarkDuplicates Tracking 248944 as yet unmatched pairs. 81851 records in RAM. INFO 2026-06-08 10:00:26 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr19:13,081,766 INFO 2026-06-08 10:00:26 MarkDuplicates Tracking 245987 as yet unmatched pairs. 78888 records in RAM. INFO 2026-06-08 10:00:28 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,737 INFO 2026-06-08 10:00:28 MarkDuplicates Tracking 245104 as yet unmatched pairs. 77990 records in RAM. INFO 2026-06-08 10:00:30 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr19:15,255,510 INFO 2026-06-08 10:00:30 MarkDuplicates Tracking 239653 as yet unmatched pairs. 72535 records in RAM. INFO 2026-06-08 10:00:31 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chr19:16,529,799 INFO 2026-06-08 10:00:31 MarkDuplicates Tracking 236353 as yet unmatched pairs. 69229 records in RAM. INFO 2026-06-08 10:00:34 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr19:17,862,181 INFO 2026-06-08 10:00:34 MarkDuplicates Tracking 240301 as yet unmatched pairs. 73166 records in RAM. INFO 2026-06-08 10:00:36 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 2s. Last read position: chr19:18,539,634 INFO 2026-06-08 10:00:36 MarkDuplicates Tracking 229671 as yet unmatched pairs. 62523 records in RAM. INFO 2026-06-08 10:00:38 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr19:18,927,809 INFO 2026-06-08 10:00:38 MarkDuplicates Tracking 226238 as yet unmatched pairs. 59088 records in RAM. INFO 2026-06-08 10:00:40 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr19:29,812,723 INFO 2026-06-08 10:00:40 MarkDuplicates Tracking 223382 as yet unmatched pairs. 56201 records in RAM. INFO 2026-06-08 10:00:42 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 1s. Last read position: chr19:35,032,668 INFO 2026-06-08 10:00:42 MarkDuplicates Tracking 220355 as yet unmatched pairs. 53160 records in RAM. INFO 2026-06-08 10:00:44 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr19:36,145,806 INFO 2026-06-08 10:00:44 MarkDuplicates Tracking 218297 as yet unmatched pairs. 51092 records in RAM. INFO 2026-06-08 10:00:46 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr19:38,717,944 INFO 2026-06-08 10:00:46 MarkDuplicates Tracking 214755 as yet unmatched pairs. 47540 records in RAM. INFO 2026-06-08 10:00:48 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr19:39,418,992 INFO 2026-06-08 10:00:48 MarkDuplicates Tracking 211064 as yet unmatched pairs. 43834 records in RAM. INFO 2026-06-08 10:00:50 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr19:40,235,954 INFO 2026-06-08 10:00:50 MarkDuplicates Tracking 208643 as yet unmatched pairs. 41403 records in RAM. INFO 2026-06-08 10:00:52 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,096 INFO 2026-06-08 10:00:52 MarkDuplicates Tracking 207303 as yet unmatched pairs. 40050 records in RAM. INFO 2026-06-08 10:00:54 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr19:42,292,704 INFO 2026-06-08 10:00:54 MarkDuplicates Tracking 202071 as yet unmatched pairs. 34810 records in RAM. INFO 2026-06-08 10:00:56 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 2s. Last read position: chr19:44,819,120 INFO 2026-06-08 10:00:56 MarkDuplicates Tracking 200410 as yet unmatched pairs. 33127 records in RAM. INFO 2026-06-08 10:00:58 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr19:45,687,570 INFO 2026-06-08 10:00:58 MarkDuplicates Tracking 197309 as yet unmatched pairs. 30017 records in RAM. INFO 2026-06-08 10:01:00 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 2s. Last read position: chr19:47,514,859 INFO 2026-06-08 10:01:00 MarkDuplicates Tracking 192320 as yet unmatched pairs. 25017 records in RAM. INFO 2026-06-08 10:01:02 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 2s. Last read position: chr19:48,955,703 INFO 2026-06-08 10:01:02 MarkDuplicates Tracking 189349 as yet unmatched pairs. 22037 records in RAM. INFO 2026-06-08 10:01:04 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr19:49,514,049 INFO 2026-06-08 10:01:04 MarkDuplicates Tracking 186073 as yet unmatched pairs. 18755 records in RAM. INFO 2026-06-08 10:01:06 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr19:49,994,758 INFO 2026-06-08 10:01:06 MarkDuplicates Tracking 182871 as yet unmatched pairs. 15546 records in RAM. INFO 2026-06-08 10:01:08 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr19:52,221,114 INFO 2026-06-08 10:01:08 MarkDuplicates Tracking 180256 as yet unmatched pairs. 12923 records in RAM. INFO 2026-06-08 10:01:10 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chr19:54,158,312 INFO 2026-06-08 10:01:10 MarkDuplicates Tracking 176988 as yet unmatched pairs. 9642 records in RAM. INFO 2026-06-08 10:01:12 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:55,386,356 INFO 2026-06-08 10:01:12 MarkDuplicates Tracking 175333 as yet unmatched pairs. 7977 records in RAM. INFO 2026-06-08 10:01:14 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr19:57,477,240 INFO 2026-06-08 10:01:14 MarkDuplicates Tracking 170697 as yet unmatched pairs. 3338 records in RAM. INFO 2026-06-08 10:01:16 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 2s. Last read position: chr19:58,549,602 INFO 2026-06-08 10:01:16 MarkDuplicates Tracking 170079 as yet unmatched pairs. 2714 records in RAM. INFO 2026-06-08 10:01:18 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 2s. Last read position: chr20:3,348,532 INFO 2026-06-08 10:01:18 MarkDuplicates Tracking 165160 as yet unmatched pairs. 47413 records in RAM. INFO 2026-06-08 10:01:21 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 2s. Last read position: chr20:11,918,520 INFO 2026-06-08 10:01:21 MarkDuplicates Tracking 162619 as yet unmatched pairs. 44858 records in RAM. INFO 2026-06-08 10:01:23 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr20:19,889,640 INFO 2026-06-08 10:01:23 MarkDuplicates Tracking 159135 as yet unmatched pairs. 41357 records in RAM. INFO 2026-06-08 10:01:25 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr20:31,561,647 INFO 2026-06-08 10:01:25 MarkDuplicates Tracking 156755 as yet unmatched pairs. 38963 records in RAM. INFO 2026-06-08 10:01:27 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr20:34,534,641 INFO 2026-06-08 10:01:27 MarkDuplicates Tracking 153806 as yet unmatched pairs. 36007 records in RAM. INFO 2026-06-08 10:01:29 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr20:36,190,354 INFO 2026-06-08 10:01:29 MarkDuplicates Tracking 150443 as yet unmatched pairs. 32634 records in RAM. INFO 2026-06-08 10:01:31 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chr20:38,349,647 INFO 2026-06-08 10:01:31 MarkDuplicates Tracking 147199 as yet unmatched pairs. 29384 records in RAM. INFO 2026-06-08 10:01:33 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 2s. Last read position: chr20:44,901,642 INFO 2026-06-08 10:01:33 MarkDuplicates Tracking 144689 as yet unmatched pairs. 26864 records in RAM. INFO 2026-06-08 10:01:35 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr20:45,892,847 INFO 2026-06-08 10:01:35 MarkDuplicates Tracking 142793 as yet unmatched pairs. 24968 records in RAM. INFO 2026-06-08 10:01:37 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr20:47,639,604 INFO 2026-06-08 10:01:37 MarkDuplicates Tracking 139837 as yet unmatched pairs. 22002 records in RAM. INFO 2026-06-08 10:01:39 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr20:50,891,660 INFO 2026-06-08 10:01:39 MarkDuplicates Tracking 136937 as yet unmatched pairs. 19094 records in RAM. INFO 2026-06-08 10:01:41 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr20:57,652,510 INFO 2026-06-08 10:01:41 MarkDuplicates Tracking 133069 as yet unmatched pairs. 15215 records in RAM. INFO 2026-06-08 10:01:43 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr20:62,309,328 INFO 2026-06-08 10:01:43 MarkDuplicates Tracking 131890 as yet unmatched pairs. 14018 records in RAM. INFO 2026-06-08 10:01:45 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr20:62,330,742 INFO 2026-06-08 10:01:45 MarkDuplicates Tracking 126951 as yet unmatched pairs. 9065 records in RAM. INFO 2026-06-08 10:01:47 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr20:62,905,893 INFO 2026-06-08 10:01:47 MarkDuplicates Tracking 122665 as yet unmatched pairs. 4775 records in RAM. INFO 2026-06-08 10:01:49 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 2s. Last read position: chr20:63,940,456 INFO 2026-06-08 10:01:49 MarkDuplicates Tracking 118989 as yet unmatched pairs. 1083 records in RAM. INFO 2026-06-08 10:01:51 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,319 INFO 2026-06-08 10:01:51 MarkDuplicates Tracking 116475 as yet unmatched pairs. 25358 records in RAM. INFO 2026-06-08 10:01:52 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 1s. Last read position: chr21:14,964,708 INFO 2026-06-08 10:01:52 MarkDuplicates Tracking 115771 as yet unmatched pairs. 24645 records in RAM. INFO 2026-06-08 10:01:54 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chr21:26,844,307 INFO 2026-06-08 10:01:54 MarkDuplicates Tracking 113522 as yet unmatched pairs. 22392 records in RAM. INFO 2026-06-08 10:01:56 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: chr21:33,288,103 INFO 2026-06-08 10:01:56 MarkDuplicates Tracking 109706 as yet unmatched pairs. 18565 records in RAM. INFO 2026-06-08 10:01:58 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr21:37,138,661 INFO 2026-06-08 10:01:58 MarkDuplicates Tracking 107040 as yet unmatched pairs. 15891 records in RAM. INFO 2026-06-08 10:02:00 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chr21:42,687,916 INFO 2026-06-08 10:02:00 MarkDuplicates Tracking 104135 as yet unmatched pairs. 12982 records in RAM. INFO 2026-06-08 10:02:02 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr21:44,806,883 INFO 2026-06-08 10:02:02 MarkDuplicates Tracking 101434 as yet unmatched pairs. 10273 records in RAM. INFO 2026-06-08 10:02:04 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr21:45,505,134 INFO 2026-06-08 10:02:04 MarkDuplicates Tracking 98344 as yet unmatched pairs. 7179 records in RAM. INFO 2026-06-08 10:02:06 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chr21:46,111,456 INFO 2026-06-08 10:02:06 MarkDuplicates Tracking 95700 as yet unmatched pairs. 4534 records in RAM. INFO 2026-06-08 10:02:09 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr22:17,817,395 INFO 2026-06-08 10:02:09 MarkDuplicates Tracking 90813 as yet unmatched pairs. 42219 records in RAM. INFO 2026-06-08 10:02:11 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chr22:20,489,111 INFO 2026-06-08 10:02:11 MarkDuplicates Tracking 87525 as yet unmatched pairs. 38929 records in RAM. INFO 2026-06-08 10:02:13 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 2s. Last read position: chr22:23,766,011 INFO 2026-06-08 10:02:13 MarkDuplicates Tracking 84705 as yet unmatched pairs. 36103 records in RAM. INFO 2026-06-08 10:02:15 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr22:28,105,511 INFO 2026-06-08 10:02:15 MarkDuplicates Tracking 81355 as yet unmatched pairs. 32749 records in RAM. INFO 2026-06-08 10:02:17 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,738 INFO 2026-06-08 10:02:17 MarkDuplicates Tracking 79624 as yet unmatched pairs. 31013 records in RAM. INFO 2026-06-08 10:02:19 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:02s. Time for last 1,000,000: 2s. Last read position: chr22:31,289,325 INFO 2026-06-08 10:02:19 MarkDuplicates Tracking 75761 as yet unmatched pairs. 27143 records in RAM. INFO 2026-06-08 10:02:21 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 2s. Last read position: chr22:36,265,907 INFO 2026-06-08 10:02:21 MarkDuplicates Tracking 72840 as yet unmatched pairs. 24213 records in RAM. INFO 2026-06-08 10:02:23 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 1s. Last read position: chr22:37,772,631 INFO 2026-06-08 10:02:23 MarkDuplicates Tracking 69480 as yet unmatched pairs. 20849 records in RAM. INFO 2026-06-08 10:02:25 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 2s. Last read position: chr22:38,487,999 INFO 2026-06-08 10:02:25 MarkDuplicates Tracking 67587 as yet unmatched pairs. 18954 records in RAM. INFO 2026-06-08 10:02:27 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: chr22:40,830,845 INFO 2026-06-08 10:02:27 MarkDuplicates Tracking 63449 as yet unmatched pairs. 14815 records in RAM. INFO 2026-06-08 10:02:29 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr22:41,636,633 INFO 2026-06-08 10:02:29 MarkDuplicates Tracking 60733 as yet unmatched pairs. 12094 records in RAM. INFO 2026-06-08 10:02:31 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr22:43,537,391 INFO 2026-06-08 10:02:31 MarkDuplicates Tracking 57554 as yet unmatched pairs. 8909 records in RAM. INFO 2026-06-08 10:02:33 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:15s. Time for last 1,000,000: 1s. Last read position: chr22:45,922,487 INFO 2026-06-08 10:02:33 MarkDuplicates Tracking 54293 as yet unmatched pairs. 5642 records in RAM. INFO 2026-06-08 10:02:35 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr22:50,284,191 INFO 2026-06-08 10:02:35 MarkDuplicates Tracking 51766 as yet unmatched pairs. 3114 records in RAM. INFO 2026-06-08 10:02:37 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 2s. Last read position: chrX:2,907,450 INFO 2026-06-08 10:02:37 MarkDuplicates Tracking 47318 as yet unmatched pairs. 43016 records in RAM. INFO 2026-06-08 10:02:39 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 1s. Last read position: chrX:5,903,353 INFO 2026-06-08 10:02:39 MarkDuplicates Tracking 45161 as yet unmatched pairs. 40854 records in RAM. INFO 2026-06-08 10:02:41 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chrX:17,801,510 INFO 2026-06-08 10:02:41 MarkDuplicates Tracking 42274 as yet unmatched pairs. 37957 records in RAM. INFO 2026-06-08 10:02:43 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 1s. Last read position: chrX:38,172,036 INFO 2026-06-08 10:02:43 MarkDuplicates Tracking 39303 as yet unmatched pairs. 34985 records in RAM. INFO 2026-06-08 10:02:45 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chrX:41,225,076 INFO 2026-06-08 10:02:45 MarkDuplicates Tracking 36590 as yet unmatched pairs. 32270 records in RAM. INFO 2026-06-08 10:02:47 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 1s. Last read position: chrX:47,218,457 INFO 2026-06-08 10:02:47 MarkDuplicates Tracking 33499 as yet unmatched pairs. 29177 records in RAM. INFO 2026-06-08 10:02:49 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chrX:49,075,559 INFO 2026-06-08 10:02:49 MarkDuplicates Tracking 30809 as yet unmatched pairs. 26487 records in RAM. INFO 2026-06-08 10:02:51 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 2s. Last read position: chrX:53,547,878 INFO 2026-06-08 10:02:51 MarkDuplicates Tracking 28208 as yet unmatched pairs. 23886 records in RAM. INFO 2026-06-08 10:02:53 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 1s. Last read position: chrX:65,729,489 INFO 2026-06-08 10:02:53 MarkDuplicates Tracking 24906 as yet unmatched pairs. 20584 records in RAM. INFO 2026-06-08 10:02:55 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 2s. Last read position: chrX:71,555,271 INFO 2026-06-08 10:02:55 MarkDuplicates Tracking 22767 as yet unmatched pairs. 18444 records in RAM. INFO 2026-06-08 10:02:57 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,851 INFO 2026-06-08 10:02:57 MarkDuplicates Tracking 20089 as yet unmatched pairs. 15766 records in RAM. INFO 2026-06-08 10:02:59 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chrX:104,188,067 INFO 2026-06-08 10:02:59 MarkDuplicates Tracking 16756 as yet unmatched pairs. 12429 records in RAM. INFO 2026-06-08 10:03:01 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 2s. Last read position: chrX:123,900,621 INFO 2026-06-08 10:03:01 MarkDuplicates Tracking 14088 as yet unmatched pairs. 9759 records in RAM. INFO 2026-06-08 10:03:03 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 1s. Last read position: chrX:147,948,708 INFO 2026-06-08 10:03:03 MarkDuplicates Tracking 12092 as yet unmatched pairs. 7761 records in RAM. INFO 2026-06-08 10:03:05 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 2s. Last read position: chrX:154,019,677 INFO 2026-06-08 10:03:05 MarkDuplicates Tracking 8548 as yet unmatched pairs. 4216 records in RAM. INFO 2026-06-08 10:03:07 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 1s. Last read position: chrX:154,461,418 INFO 2026-06-08 10:03:07 MarkDuplicates Tracking 5287 as yet unmatched pairs. 954 records in RAM. INFO 2026-06-08 10:03:09 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,768 INFO 2026-06-08 10:03:09 MarkDuplicates Tracking 2227 as yet unmatched pairs. 32 records in RAM. INFO 2026-06-08 10:03:10 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 1s. Last read position: KI270733.1:177,434 INFO 2026-06-08 10:03:10 MarkDuplicates Tracking 191 as yet unmatched pairs. 27 records in RAM. INFO 2026-06-08 10:03:11 MarkDuplicates Read 631301256 records. 0 pairs never matched. INFO 2026-06-08 10:03:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 58108618832; totalMemory: 83013664768; maxMemory: 127137742848 INFO 2026-06-08 10:03:56 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk. INFO 2026-06-08 10:04:01 MarkDuplicates Traversing read pair information and detecting duplicates. INFO 2026-06-08 10:04:26 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 10:04:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,728 INFO 2026-06-08 10:04:28 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 10:04:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,129 INFO 2026-06-08 10:04:29 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 10:04:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,924 INFO 2026-06-08 10:04:31 OpticalDuplicateFinder Large duplicate set. size = 1125 INFO 2026-06-08 10:04:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,212 INFO 2026-06-08 10:04:34 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 10:04:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,759 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder Large duplicate set. size = 2427 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,695 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,529 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder Large duplicate set. size = 1269 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,334 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder Large duplicate set. size = 1191 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,601 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 10:04:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,214 INFO 2026-06-08 10:04:39 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 10:04:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,360 INFO 2026-06-08 10:04:39 OpticalDuplicateFinder Large duplicate set. size = 1710 INFO 2026-06-08 10:04:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,167 INFO 2026-06-08 10:04:43 OpticalDuplicateFinder Large duplicate set. size = 1304 INFO 2026-06-08 10:04:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,882 INFO 2026-06-08 10:04:43 OpticalDuplicateFinder Large duplicate set. size = 1471 INFO 2026-06-08 10:04:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,121 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 10:04:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,033 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder Large duplicate set. size = 1184 INFO 2026-06-08 10:04:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,778 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1621 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,456 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 10:04:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,602 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1566 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,677 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1533 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,851 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1951 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,894 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1409 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,657 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1715 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,181 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,876 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1327 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,672 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1260 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,199 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 10:04:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,962 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,926 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,612 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,674 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,724 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1281 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,850 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1454 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,273 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1205 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,306 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,344 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,506 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,962 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 3401 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,000 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,102 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,344 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,529 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1563 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,828 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 2285 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,900 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,096 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,337 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,771 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1088 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,968 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 2378 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,459 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,618 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1822 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,541 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 2326 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,556 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,538 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1320 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,310 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1342 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,090 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 2602 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,929 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,097 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1434 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,818 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 2916 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,111 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,694 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder Large duplicate set. size = 1130 INFO 2026-06-08 10:04:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,299 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,696 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,827 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1437 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,555 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1797 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,072 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1820 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,283 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 2458 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,815 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,736 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,514 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,971 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1482 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,783 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,529 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1083 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,734 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1324 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,167 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,761 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,402 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,715 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1149 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,782 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1264 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,346 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1753 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,413 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1739 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,986 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1886 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,676 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1601 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,340 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 2239 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,028 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,450 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 3514 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,492 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,397 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,161 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1370 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,931 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1325 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,071 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 2860 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,851 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,542 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1391 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,094 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 2492 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,677 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,668 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 3285 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,732 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,051 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,773 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1765 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 2121 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,388 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,964 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1157 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,535 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,144 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,161 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1584 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,012 INFO 2026-06-08 10:04:56 OpticalDuplicateFinder Large duplicate set. size = 1969 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,968 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1619 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,556 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1824 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,940 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,567 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1247 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,279 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 2325 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,233 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,269 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,877 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1243 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,076 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1132 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,795 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,129 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,644 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1521 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,884 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,521 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,529 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1265 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,464 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,074 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1505 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,272 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 2365 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,982 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,949 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1376 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,788 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-08 10:04:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,140 INFO 2026-06-08 10:05:04 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 10:05:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 10:06:27 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 10:06:39 MarkDuplicates After generateDuplicateIndexes freeMemory: 40286958296; totalMemory: 57512296448; maxMemory: 127137742848 INFO 2026-06-08 10:06:39 MarkDuplicates Marking 259803540 records as duplicates. INFO 2026-06-08 10:06:39 MarkDuplicates Found 9343512 optical duplicate clusters. INFO 2026-06-08 10:06:39 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 10:06:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,695,820 INFO 2026-06-08 10:07:14 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:34s. Time for last 10,000,000: 17s. Last read position: chr1:46,303,700 INFO 2026-06-08 10:07:32 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:119,937,416 INFO 2026-06-08 10:07:49 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 16s. Last read position: chr1:155,717,099 INFO 2026-06-08 10:08:06 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:26s. Time for last 10,000,000: 17s. Last read position: chr1:200,908,743 INFO 2026-06-08 10:08:24 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 17s. Last read position: chr2:9,845,225 INFO 2026-06-08 10:08:41 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 17s. Last read position: chr2:36,899,559 INFO 2026-06-08 10:08:58 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 16s. Last read position: chr2:96,295,478 INFO 2026-06-08 10:09:15 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:35s. Time for last 10,000,000: 16s. Last read position: chr2:130,657,766 INFO 2026-06-08 10:09:32 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 16s. Last read position: chr2:178,620,496 INFO 2026-06-08 10:09:49 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 17s. Last read position: chr2:215,362,036 INFO 2026-06-08 10:10:06 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 17s. Last read position: chr2:237,344,940 INFO 2026-06-08 10:10:23 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:44s. Time for last 10,000,000: 17s. Last read position: chr3:47,891,577 INFO 2026-06-08 10:10:40 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:01s. Time for last 10,000,000: 17s. Last read position: chr3:105,776,356 INFO 2026-06-08 10:10:58 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 17s. Last read position: chr3:170,361,351 INFO 2026-06-08 10:11:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 17s. Last read position: chr4:26,420,655 INFO 2026-06-08 10:11:32 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 17s. Last read position: chr4:128,107,168 INFO 2026-06-08 10:11:49 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:10s. Time for last 10,000,000: 17s. Last read position: chr5:50,795,035 INFO 2026-06-08 10:12:07 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 17s. Last read position: chr5:132,934,625 INFO 2026-06-08 10:12:24 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:44s. Time for last 10,000,000: 17s. Last read position: chr5:171,392,932 INFO 2026-06-08 10:12:41 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:02s. Time for last 10,000,000: 17s. Last read position: chr6:27,814,440 INFO 2026-06-08 10:12:59 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:19s. Time for last 10,000,000: 17s. Last read position: chr6:57,147,085 INFO 2026-06-08 10:13:17 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:37s. Time for last 10,000,000: 17s. Last read position: chr6:154,733,837 INFO 2026-06-08 10:13:34 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 17s. Last read position: chr7:28,956,502 INFO 2026-06-08 10:13:51 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:11s. Time for last 10,000,000: 17s. Last read position: chr7:94,407,846 INFO 2026-06-08 10:14:08 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:28s. Time for last 10,000,000: 16s. Last read position: chr7:137,885,458 INFO 2026-06-08 10:14:25 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:45s. Time for last 10,000,000: 17s. Last read position: chr8:29,147,424 INFO 2026-06-08 10:14:42 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:02s. Time for last 10,000,000: 16s. Last read position: chr8:94,436,566 INFO 2026-06-08 10:14:59 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:19s. Time for last 10,000,000: 16s. Last read position: chr8:143,871,295 INFO 2026-06-08 10:15:16 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:36s. Time for last 10,000,000: 17s. Last read position: chr9:87,706,228 INFO 2026-06-08 10:15:33 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 17s. Last read position: chr9:137,433,979 INFO 2026-06-08 10:15:50 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:10s. Time for last 10,000,000: 17s. Last read position: chr10:69,257,035 INFO 2026-06-08 10:16:07 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 17s. Last read position: chr10:121,485,399 INFO 2026-06-08 10:16:24 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 17s. Last read position: chr11:33,376,860 INFO 2026-06-08 10:16:41 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 16s. Last read position: chr11:65,623,951 INFO 2026-06-08 10:16:58 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 17s. Last read position: chr11:117,144,393 INFO 2026-06-08 10:17:15 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 17s. Last read position: chr12:10,220,443 INFO 2026-06-08 10:17:32 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 16s. Last read position: chr12:54,283,907 INFO 2026-06-08 10:17:49 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 16s. Last read position: chr12:105,366,635 INFO 2026-06-08 10:18:06 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:27s. Time for last 10,000,000: 17s. Last read position: chr13:25,338,638 INFO 2026-06-08 10:18:23 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:44s. Time for last 10,000,000: 17s. Last read position: chr13:110,914,796 INFO 2026-06-08 10:18:41 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:01s. Time for last 10,000,000: 17s. Last read position: chr14:64,212,869 INFO 2026-06-08 10:18:58 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:18s. Time for last 10,000,000: 17s. Last read position: chr15:22,947,218 INFO 2026-06-08 10:19:15 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:35s. Time for last 10,000,000: 17s. Last read position: chr15:65,196,743 INFO 2026-06-08 10:19:32 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:52s. Time for last 10,000,000: 16s. Last read position: chr16:1,691,866 INFO 2026-06-08 10:19:48 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:09s. Time for last 10,000,000: 16s. Last read position: chr16:21,467,113 INFO 2026-06-08 10:20:05 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 16s. Last read position: chr16:50,304,499 INFO 2026-06-08 10:20:22 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 16s. Last read position: chr16:89,910,617 INFO 2026-06-08 10:20:39 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:00s. Time for last 10,000,000: 16s. Last read position: chr17:19,347,085 INFO 2026-06-08 10:20:56 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 16s. Last read position: chr17:42,671,358 INFO 2026-06-08 10:21:13 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:34s. Time for last 10,000,000: 16s. Last read position: chr17:50,190,326 INFO 2026-06-08 10:21:30 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:50s. Time for last 10,000,000: 16s. Last read position: chr17:59,664,839 INFO 2026-06-08 10:21:47 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:07s. Time for last 10,000,000: 16s. Last read position: chr17:82,059,975 INFO 2026-06-08 10:22:04 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:24s. Time for last 10,000,000: 17s. Last read position: chr19:2,109,885 INFO 2026-06-08 10:22:21 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 16s. Last read position: chr19:14,516,737 INFO 2026-06-08 10:22:38 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 16s. Last read position: chr19:39,418,992 INFO 2026-06-08 10:22:55 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 16s. Last read position: chr19:52,221,114 INFO 2026-06-08 10:23:12 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 16s. Last read position: chr20:36,190,354 INFO 2026-06-08 10:23:29 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 16s. Last read position: chr20:63,940,456 INFO 2026-06-08 10:23:46 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:06s. Time for last 10,000,000: 16s. Last read position: chr22:17,817,395 INFO 2026-06-08 10:24:03 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:23s. Time for last 10,000,000: 17s. Last read position: chr22:41,636,633 INFO 2026-06-08 10:24:20 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:40s. Time for last 10,000,000: 17s. Last read position: chrX:49,075,559 INFO 2026-06-08 10:24:37 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:57s. Time for last 10,000,000: 16s. Last read position: GL000220.1:116,768 INFO 2026-06-08 10:24:48 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 10:24:48 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 10:24:48 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 10:24:48 MarkDuplicates Before output close freeMemory: 10619440784; totalMemory: 57512296448; maxMemory: 127137742848 INFO 2026-06-08 10:24:48 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 10:24:48 MarkDuplicates After output close freeMemory: 203780960; totalMemory: 234881024; maxMemory: 127137742848 [Mon Jun 08 10:24:48 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.57 minutes. Runtime.totalMemory()=234881024 ls: *cram: No such file or directory ls: *.crai: No such file or directory