Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/5474a490838592458a7394731140b3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/4fa19a40b71428a85f9d4d4843e0f7/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/4fa19a40b71428a85f9d4d4843e0f7/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/5474a490838592458a7394731140b3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/1497b035a9d3dcec217944abc79dee/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv ==> STAGING COMPLETE (6 inputs) Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv --gtf /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --shrink_introns --max_intron_length 1000 Done. Execution Time = 0.13 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusionreport.tsv --gtf /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --shrink_introns --max_intron_length 1000 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/fusion_contigs.ok Running: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/cp_contigs_file_workdir Running: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/cp_gtf_file_workdir.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/cytoBand.txt Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/cytoBand.txt Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/cytoband.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed -parsing GTF file: /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/merged_contig_gtf_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.bedsort.ok Running: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.bgzip.ok Running: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.sorted.bed.gz Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bed.tabix.ok Running: samtools faidx /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/merged_contig_fai.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --CPU 8 --out_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star --out_dir /tmp/nxf.6Rr8fozmq3/fi_workdir --reads "/tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz" * Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c' Jun 08 10:47:53 ..... started STAR run Jun 08 10:47:53 ..... loading genome Jun 08 10:49:41 ... generating Suffix Array index Jun 08 10:53:22 ... completed Suffix Array index Jun 08 10:53:23 ..... processing annotations GTF Jun 08 10:53:23 ..... inserting junctions into the genome indices Jun 08 10:54:24 ..... started mapping Jun 08 11:48:01 ..... finished mapping Jun 08 11:48:02 ..... started sorting BAM Jun 08 11:48:04 ..... finished successfully * Running CMD: mv Aligned.sortedByCoord.out.bam 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam * Running CMD: samtools index 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam Execution Time = 60.24 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --CPU 8 --out_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star --out_dir /tmp/nxf.6Rr8fozmq3/fi_workdir --reads "/tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz" Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/run_STAR.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --remove_dups 11:48:27 : INFO : Done. Execution Time = 0.33 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py -i /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.sortedByCoord.out.bam -o /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --remove_dups Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/mark_dup_reads.ok Running: samtools index /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/mark_dups_reads.index.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam -parsing GTF file: /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf -parsing /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam [10000] [20000] [30000] [40000] [50000] [60000] [70000] [80000] [90000] [100000] [110000] [120000] [130000] [140000] [150000] [160000] [170000] [180000] [190000] [200000] [210000] [220000] [230000] [240000] [250000] [260000] [270000] [280000] [290000] [300000] [310000] [320000] [330000] [340000] [350000] [360000] [370000] [380000] [390000] [400000] [410000] [420000] [430000] [440000] [450000] [460000] [470000] [480000] [490000] [500000] [510000] [520000] [530000] [540000] [550000] [560000] [570000] [580000] [590000] [600000] [610000] [620000] [630000] [640000] [650000] [660000] [670000] [680000] [690000] [700000] [710000] [720000] [730000] [740000] [750000] [760000] [770000] [780000] [790000] [800000] [810000] [820000] [830000] [840000] [850000] [860000] [870000] [880000] [890000] [900000] [910000] [920000] [930000] [940000] [950000] [960000] [970000] [980000] [990000] [1000000] [1010000] [1020000] [1030000] [1040000] [1050000] [1060000] [1070000] [1080000] [1090000] [1100000] [1110000] [1120000] [1130000] [1140000] [1150000] [1160000] [1170000] [1180000] [1190000] [1200000] [1210000] [1220000] [1230000] [1240000] [1250000] [1260000] [1270000] [1280000] [1290000] [1300000] [1310000] [1320000] [1330000] [1340000] [1350000] [1360000] [1370000] [1380000] [1390000] [1400000] [1410000] [1420000] [1430000] [1440000] [1450000] [1460000] [1470000] [1480000] [1490000] [1500000] [1510000] [1520000] [1530000] [1540000] [1550000] [1560000] [1570000] [1580000] [1590000] [1600000] [1610000] [1620000] [1630000] [1640000] [1650000] [1660000] [1670000] [1680000] [1690000] [1700000] [1710000] [1720000] [1730000] [1740000] [1750000] [1760000] [1770000] [1780000] [1790000] [1800000] [1810000] [1820000] [1830000] [1840000] [1850000] [1860000] [1870000] [1880000] [1890000] [1900000] [1910000] [1920000] [1930000] [1940000] [1950000] [1960000] [1970000] [1980000] [1990000] [2000000] [2010000] [2020000] [2030000] [2040000] [2050000] [2060000] [2070000] [2080000] [2090000] [2100000] [2110000] [2120000] [2130000] [2140000] [2150000] [2160000] [2170000] [2180000] [2190000] [2200000] [2210000] [2220000] [2230000] [2240000] [2250000] [2260000] [2270000] [2280000] [2290000] [2300000] [2310000] [2320000] [2330000] [2340000] [2350000] [2360000] [2370000] [2380000] [2390000] [2400000] [2410000] [2420000] [2430000] [2440000] [2450000] [2460000] [2470000] [2480000] [2490000] [2500000] [2510000] [2520000] [2530000] [2540000] [2550000] [2560000] [2570000] [2580000] [2590000] [2600000] [2610000] [2620000] [2630000] [2640000] [2650000] [2660000] [2670000] [2680000] [2690000] [2700000] [2710000] [2720000] [2730000] [2740000] [2750000] [2760000] [2770000] [2780000] [2790000] [2800000] [2810000] [2820000] [2830000] [2840000] [2850000] [2860000] [2870000] [2880000] [2890000] [2900000] [2910000] [2920000] [2930000] [2940000] [2950000] [2960000] [2970000] [2980000] [2990000] [3000000] [3010000] [3020000] [3030000] [3040000] [3050000] [3060000] [3070000] [3080000] [3090000] [3100000] [3110000] [3120000] [3130000] [3140000] [3150000] [3160000] [3170000] [3180000] [3190000] [3200000] [3210000] [3220000] [3230000] [3240000] [3250000] [3260000] [3270000] [3280000] [3290000] [3300000] [3310000] [3320000] [3330000] [3340000] [3350000] [3360000] [3370000] [3380000] [3390000] [3400000] [3410000] [3420000] [3430000] [3440000] [3450000] [3460000] [3470000] [3480000] [3490000] [3500000] [3510000] [3520000] [3530000] [3540000] [3550000] [3560000] [3570000] [3580000] [3590000] [3600000] [3610000] [3620000] [3630000] [3640000] [3650000] [3660000] [3670000] [3680000] [3690000] [3700000] [3710000] [3720000] [3730000] [3740000] [3750000] [3760000] [3770000] [3780000] [3790000] [3800000] [3810000] [3820000] [3830000] [3840000] [3850000] [3860000] [3870000] [3880000] [3890000] [3900000] [3910000] [3920000] [3930000] [3940000] [3950000] [3960000] [3970000] [3980000] [3990000] [4000000] [4010000] [4020000] [4030000] [4040000] [4050000] [4060000] [4070000] [4080000] [4090000] [4100000] [4110000] [4120000] [4130000] [4140000] [4150000] [4160000] [4170000] [4180000] [4190000] [4200000] [4210000] [4220000] [4230000] [4240000] [4250000] [4260000] [4270000] [4280000] [4290000] [4300000] [4310000] [4320000] [4330000] [4340000] [4350000] [4360000] [4370000] [4380000] -done parsing /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam. Extracting junction info. junction read elimination tally: $VAR1 = { 'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 1048, 'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 70, 'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 74, 'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 3826, 'seq-similar region overlap' => 3, 'num genes matched < 2' => 40, 'per_id < 96' => 25397, 'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 466, ' ** passed ** ' => 14763, 'small anchor length' => 144, 'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 1428, 'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 5, 'exons hit < 2' => 26, 'low complexity anchor region' => 27, 'excessive soft clipping' => 85158, 'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 384, 'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 1155, 'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 963 }; -writing fusion junction support info. Execution Time = 2.31 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam -outputting the spanning read info: /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info. - counting read alignments among fusion contigs. [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] -fusion SPANNING read extraction for scaff: AC006008.1--ACTR3B [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] -fusion SPANNING read extraction for scaff: AC090735.1--PRKCA [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] -fusion SPANNING read extraction for scaff: AC092666.1--ACTR3B [1000] -fusion SPANNING read extraction for scaff: AC092969.1--SPATA16 [1000] -fusion SPANNING read extraction for scaff: AC096759.2--SPATA16 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] -fusion SPANNING read extraction for scaff: CDKN2A--TRPM3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] -fusion SPANNING read extraction for scaff: CDV3--MT-RNR2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] -fusion SPANNING read extraction for scaff: CLCN7--RBFOX1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] -fusion SPANNING read extraction for scaff: CPNE4--ACP3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] -fusion SPANNING read extraction for scaff: EXT2--LRRC4C [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] -fusion SPANNING read extraction for scaff: FHIT--PTPRG [1000] [2000] -fusion SPANNING read extraction for scaff: GUCY1B2--NKAIN2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] -fusion SPANNING read extraction for scaff: HSPBP1--BRSK1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] [262000] [263000] [264000] [265000] [266000] [267000] [268000] [269000] [270000] [271000] [272000] [273000] [274000] [275000] [276000] [277000] [278000] [279000] [280000] [281000] [282000] [283000] [284000] [285000] [286000] [287000] [288000] [289000] [290000] [291000] [292000] [293000] [294000] [295000] [296000] [297000] [298000] [299000] [300000] [301000] [302000] [303000] [304000] [305000] [306000] [307000] [308000] [309000] [310000] [311000] [312000] [313000] [314000] [315000] [316000] [317000] [318000] [319000] [320000] [321000] [322000] [323000] [324000] [325000] [326000] [327000] [328000] [329000] [330000] [331000] [332000] [333000] [334000] [335000] [336000] [337000] [338000] [339000] [340000] [341000] [342000] [343000] [344000] [345000] [346000] [347000] [348000] [349000] [350000] [351000] [352000] [353000] [354000] [355000] [356000] [357000] [358000] [359000] [360000] [361000] [362000] [363000] [364000] [365000] [366000] [367000] [368000] [369000] [370000] [371000] [372000] [373000] [374000] [375000] [376000] [377000] [378000] [379000] [380000] [381000] [382000] [383000] [384000] [385000] [386000] [387000] [388000] [389000] [390000] [391000] [392000] [393000] [394000] [395000] [396000] [397000] [398000] [399000] [400000] [401000] [402000] [403000] [404000] [405000] [406000] [407000] [408000] [409000] [410000] [411000] [412000] [413000] [414000] [415000] [416000] [417000] [418000] [419000] [420000] [421000] [422000] [423000] [424000] [425000] [426000] [427000] [428000] [429000] [430000] [431000] [432000] [433000] [434000] [435000] [436000] [437000] [438000] [439000] [440000] [441000] [442000] [443000] [444000] [445000] [446000] [447000] [448000] [449000] [450000] [451000] [452000] [453000] [454000] [455000] [456000] [457000] [458000] [459000] [460000] [461000] [462000] [463000] [464000] [465000] [466000] [467000] [468000] [469000] [470000] [471000] [472000] [473000] [474000] [475000] [476000] [477000] [478000] [479000] [480000] [481000] [482000] [483000] [484000] [485000] [486000] [487000] [488000] [489000] [490000] [491000] [492000] [493000] [494000] [495000] [496000] [497000] [498000] [499000] [500000] [501000] [502000] [503000] [504000] [505000] [506000] [507000] [508000] [509000] [510000] [511000] [512000] [513000] [514000] [515000] [516000] [517000] [518000] [519000] [520000] [521000] [522000] [523000] [524000] [525000] [526000] [527000] [528000] [529000] [530000] [531000] [532000] [533000] [534000] [535000] [536000] [537000] [538000] [539000] [540000] [541000] [542000] [543000] [544000] [545000] [546000] [547000] [548000] [549000] [550000] [551000] [552000] [553000] [554000] [555000] [556000] [557000] [558000] [559000] [560000] [561000] [562000] [563000] [564000] [565000] [566000] [567000] [568000] [569000] [570000] [571000] [572000] [573000] [574000] [575000] [576000] [577000] [578000] [579000] [580000] [581000] [582000] [583000] [584000] [585000] [586000] [587000] [588000] [589000] [590000] [591000] [592000] [593000] [594000] [595000] [596000] [597000] [598000] [599000] [600000] [601000] [602000] [603000] [604000] [605000] [606000] [607000] [608000] [609000] [610000] [611000] [612000] [613000] [614000] [615000] [616000] [617000] [618000] [619000] [620000] [621000] [622000] [623000] [624000] [625000] [626000] [627000] [628000] [629000] [630000] [631000] [632000] [633000] [634000] [635000] [636000] [637000] [638000] [639000] [640000] [641000] [642000] [643000] [644000] [645000] [646000] [647000] [648000] [649000] [650000] [651000] [652000] [653000] [654000] [655000] [656000] [657000] [658000] [659000] [660000] [661000] [662000] [663000] [664000] [665000] [666000] [667000] [668000] [669000] [670000] [671000] [672000] [673000] [674000] [675000] [676000] [677000] [678000] [679000] [680000] [681000] [682000] [683000] [684000] [685000] [686000] [687000] [688000] [689000] [690000] [691000] [692000] [693000] [694000] [695000] [696000] [697000] [698000] [699000] [700000] [701000] [702000] [703000] [704000] [705000] [706000] [707000] [708000] [709000] [710000] [711000] [712000] [713000] [714000] [715000] [716000] [717000] [718000] [719000] [720000] [721000] [722000] [723000] [724000] [725000] [726000] [727000] [728000] [729000] [730000] [731000] [732000] [733000] [734000] [735000] [736000] [737000] [738000] [739000] [740000] [741000] [742000] [743000] [744000] [745000] [746000] [747000] [748000] [749000] [750000] [751000] [752000] [753000] [754000] [755000] [756000] [757000] [758000] [759000] [760000] [761000] [762000] [763000] [764000] [765000] [766000] [767000] [768000] [769000] [770000] [771000] [772000] [773000] [774000] [775000] [776000] [777000] [778000] [779000] [780000] [781000] [782000] [783000] [784000] [785000] [786000] [787000] [788000] [789000] [790000] [791000] [792000] [793000] [794000] [795000] [796000] [797000] [798000] [799000] [800000] [801000] [802000] [803000] [804000] [805000] [806000] [807000] [808000] [809000] [810000] [811000] [812000] [813000] [814000] [815000] [816000] [817000] [818000] [819000] [820000] [821000] [822000] [823000] [824000] [825000] [826000] [827000] [828000] [829000] [830000] [831000] [832000] [833000] [834000] [835000] [836000] [837000] [838000] [839000] [840000] [841000] [842000] [843000] [844000] [845000] [846000] [847000] [848000] [849000] [850000] [851000] [852000] [853000] [854000] [855000] [856000] [857000] [858000] [859000] [860000] [861000] [862000] [863000] [864000] [865000] [866000] [867000] [868000] [869000] [870000] [871000] [872000] [873000] [874000] [875000] [876000] [877000] [878000] [879000] [880000] [881000] [882000] [883000] [884000] [885000] [886000] [887000] [888000] [889000] [890000] [891000] [892000] [893000] [894000] [895000] [896000] [897000] [898000] [899000] [900000] [901000] [902000] [903000] [904000] [905000] [906000] [907000] [908000] [909000] [910000] [911000] [912000] [913000] [914000] [915000] [916000] [917000] [918000] [919000] [920000] [921000] [922000] [923000] [924000] [925000] [926000] [927000] [928000] [929000] [930000] [931000] [932000] [933000] [934000] [935000] [936000] [937000] [938000] [939000] [940000] [941000] [942000] [943000] [944000] [945000] [946000] [947000] [948000] [949000] [950000] [951000] [952000] [953000] [954000] [955000] [956000] [957000] [958000] [959000] [960000] [961000] [962000] [963000] [964000] [965000] [966000] [967000] [968000] [969000] [970000] [971000] [972000] [973000] [974000] [975000] [976000] [977000] [978000] [979000] [980000] [981000] [982000] [983000] [984000] [985000] [986000] [987000] [988000] [989000] [990000] [991000] [992000] [993000] [994000] [995000] [996000] [997000] [998000] [999000] [1000000] [1001000] [1002000] [1003000] [1004000] [1005000] [1006000] [1007000] [1008000] [1009000] [1010000] [1011000] [1012000] [1013000] [1014000] [1015000] [1016000] [1017000] [1018000] [1019000] [1020000] [1021000] [1022000] [1023000] [1024000] [1025000] [1026000] [1027000] [1028000] [1029000] [1030000] [1031000] [1032000] [1033000] [1034000] [1035000] [1036000] [1037000] [1038000] [1039000] [1040000] [1041000] [1042000] [1043000] [1044000] [1045000] [1046000] [1047000] [1048000] [1049000] [1050000] [1051000] [1052000] [1053000] [1054000] [1055000] [1056000] [1057000] [1058000] [1059000] [1060000] [1061000] [1062000] [1063000] [1064000] [1065000] [1066000] [1067000] [1068000] [1069000] [1070000] [1071000] [1072000] [1073000] [1074000] [1075000] [1076000] [1077000] [1078000] [1079000] [1080000] [1081000] [1082000] [1083000] [1084000] [1085000] [1086000] [1087000] [1088000] [1089000] [1090000] [1091000] [1092000] [1093000] [1094000] [1095000] [1096000] [1097000] [1098000] [1099000] [1100000] [1101000] [1102000] [1103000] [1104000] [1105000] [1106000] [1107000] [1108000] [1109000] [1110000] [1111000] [1112000] [1113000] [1114000] [1115000] [1116000] [1117000] [1118000] [1119000] [1120000] [1121000] [1122000] [1123000] [1124000] [1125000] [1126000] [1127000] [1128000] [1129000] [1130000] [1131000] [1132000] [1133000] [1134000] [1135000] [1136000] [1137000] [1138000] [1139000] [1140000] [1141000] [1142000] [1143000] [1144000] [1145000] [1146000] [1147000] [1148000] [1149000] [1150000] [1151000] [1152000] [1153000] [1154000] [1155000] [1156000] [1157000] [1158000] [1159000] [1160000] [1161000] [1162000] [1163000] [1164000] [1165000] [1166000] [1167000] [1168000] [1169000] [1170000] [1171000] [1172000] [1173000] [1174000] [1175000] [1176000] [1177000] [1178000] [1179000] [1180000] [1181000] [1182000] [1183000] [1184000] [1185000] [1186000] [1187000] [1188000] [1189000] [1190000] [1191000] [1192000] [1193000] [1194000] [1195000] [1196000] [1197000] [1198000] [1199000] [1200000] [1201000] [1202000] [1203000] [1204000] [1205000] [1206000] [1207000] [1208000] [1209000] [1210000] [1211000] [1212000] [1213000] [1214000] [1215000] [1216000] [1217000] [1218000] [1219000] [1220000] [1221000] [1222000] [1223000] [1224000] [1225000] [1226000] [1227000] [1228000] [1229000] [1230000] [1231000] [1232000] [1233000] [1234000] [1235000] [1236000] [1237000] [1238000] [1239000] [1240000] [1241000] [1242000] [1243000] [1244000] [1245000] [1246000] [1247000] [1248000] [1249000] [1250000] [1251000] [1252000] [1253000] [1254000] [1255000] [1256000] [1257000] [1258000] [1259000] [1260000] [1261000] [1262000] [1263000] [1264000] [1265000] [1266000] [1267000] [1268000] [1269000] [1270000] [1271000] [1272000] [1273000] [1274000] [1275000] [1276000] [1277000] [1278000] [1279000] [1280000] [1281000] [1282000] [1283000] [1284000] [1285000] [1286000] [1287000] [1288000] [1289000] [1290000] [1291000] [1292000] [1293000] [1294000] [1295000] [1296000] [1297000] [1298000] [1299000] [1300000] [1301000] [1302000] [1303000] [1304000] [1305000] [1306000] [1307000] [1308000] [1309000] [1310000] [1311000] [1312000] [1313000] [1314000] [1315000] [1316000] [1317000] [1318000] [1319000] [1320000] [1321000] [1322000] [1323000] [1324000] [1325000] [1326000] [1327000] [1328000] [1329000] [1330000] [1331000] [1332000] [1333000] [1334000] [1335000] [1336000] [1337000] [1338000] [1339000] [1340000] [1341000] [1342000] [1343000] [1344000] [1345000] [1346000] [1347000] [1348000] [1349000] [1350000] [1351000] [1352000] [1353000] [1354000] [1355000] [1356000] [1357000] [1358000] [1359000] [1360000] [1361000] [1362000] [1363000] [1364000] [1365000] [1366000] [1367000] [1368000] [1369000] [1370000] [1371000] [1372000] [1373000] [1374000] [1375000] [1376000] [1377000] [1378000] [1379000] [1380000] [1381000] [1382000] [1383000] [1384000] [1385000] [1386000] [1387000] [1388000] [1389000] [1390000] [1391000] [1392000] [1393000] [1394000] [1395000] [1396000] [1397000] [1398000] [1399000] [1400000] [1401000] [1402000] [1403000] [1404000] [1405000] [1406000] [1407000] [1408000] [1409000] [1410000] [1411000] [1412000] [1413000] [1414000] [1415000] [1416000] [1417000] [1418000] [1419000] [1420000] [1421000] [1422000] [1423000] [1424000] [1425000] [1426000] [1427000] [1428000] [1429000] [1430000] [1431000] [1432000] [1433000] [1434000] [1435000] [1436000] [1437000] [1438000] [1439000] [1440000] [1441000] [1442000] [1443000] [1444000] [1445000] [1446000] [1447000] [1448000] [1449000] [1450000] [1451000] [1452000] [1453000] [1454000] [1455000] [1456000] [1457000] [1458000] [1459000] [1460000] [1461000] [1462000] [1463000] [1464000] [1465000] [1466000] [1467000] [1468000] [1469000] [1470000] [1471000] [1472000] [1473000] [1474000] [1475000] [1476000] [1477000] [1478000] [1479000] [1480000] [1481000] [1482000] [1483000] [1484000] [1485000] [1486000] [1487000] [1488000] [1489000] [1490000] [1491000] [1492000] [1493000] [1494000] [1495000] [1496000] [1497000] [1498000] [1499000] [1500000] [1501000] [1502000] [1503000] [1504000] [1505000] [1506000] [1507000] [1508000] [1509000] [1510000] [1511000] [1512000] [1513000] [1514000] [1515000] [1516000] [1517000] [1518000] [1519000] [1520000] [1521000] [1522000] [1523000] [1524000] [1525000] [1526000] [1527000] [1528000] [1529000] [1530000] [1531000] [1532000] [1533000] [1534000] [1535000] [1536000] [1537000] [1538000] [1539000] [1540000] [1541000] [1542000] [1543000] [1544000] [1545000] [1546000] [1547000] [1548000] [1549000] [1550000] [1551000] [1552000] [1553000] [1554000] [1555000] [1556000] [1557000] [1558000] [1559000] [1560000] [1561000] [1562000] [1563000] [1564000] [1565000] [1566000] [1567000] [1568000] [1569000] [1570000] [1571000] [1572000] [1573000] [1574000] [1575000] [1576000] [1577000] [1578000] [1579000] [1580000] [1581000] [1582000] [1583000] [1584000] [1585000] [1586000] [1587000] [1588000] [1589000] [1590000] [1591000] [1592000] [1593000] [1594000] [1595000] [1596000] [1597000] [1598000] [1599000] [1600000] [1601000] [1602000] [1603000] [1604000] [1605000] [1606000] [1607000] [1608000] [1609000] [1610000] [1611000] [1612000] [1613000] [1614000] [1615000] [1616000] [1617000] [1618000] [1619000] [1620000] [1621000] [1622000] [1623000] [1624000] [1625000] [1626000] [1627000] [1628000] [1629000] [1630000] [1631000] [1632000] [1633000] [1634000] [1635000] [1636000] [1637000] [1638000] [1639000] [1640000] [1641000] [1642000] [1643000] [1644000] [1645000] [1646000] [1647000] [1648000] [1649000] [1650000] [1651000] [1652000] [1653000] [1654000] [1655000] [1656000] [1657000] [1658000] [1659000] [1660000] [1661000] [1662000] [1663000] [1664000] [1665000] [1666000] [1667000] [1668000] [1669000] [1670000] [1671000] [1672000] [1673000] [1674000] [1675000] [1676000] [1677000] [1678000] [1679000] [1680000] [1681000] [1682000] [1683000] [1684000] [1685000] [1686000] [1687000] [1688000] [1689000] [1690000] [1691000] [1692000] [1693000] [1694000] [1695000] [1696000] [1697000] [1698000] [1699000] [1700000] [1701000] [1702000] [1703000] [1704000] [1705000] [1706000] [1707000] [1708000] [1709000] [1710000] [1711000] [1712000] [1713000] [1714000] [1715000] [1716000] [1717000] [1718000] [1719000] [1720000] [1721000] [1722000] [1723000] [1724000] [1725000] [1726000] [1727000] [1728000] [1729000] [1730000] [1731000] [1732000] [1733000] [1734000] [1735000] [1736000] [1737000] [1738000] [1739000] [1740000] [1741000] [1742000] [1743000] [1744000] [1745000] [1746000] [1747000] [1748000] [1749000] [1750000] [1751000] [1752000] [1753000] [1754000] [1755000] [1756000] [1757000] [1758000] [1759000] [1760000] [1761000] [1762000] [1763000] [1764000] [1765000] [1766000] [1767000] [1768000] [1769000] [1770000] [1771000] [1772000] [1773000] [1774000] [1775000] [1776000] [1777000] [1778000] [1779000] [1780000] [1781000] [1782000] [1783000] [1784000] [1785000] [1786000] [1787000] [1788000] [1789000] [1790000] [1791000] [1792000] [1793000] [1794000] [1795000] [1796000] [1797000] [1798000] [1799000] [1800000] [1801000] [1802000] [1803000] [1804000] [1805000] [1806000] [1807000] [1808000] [1809000] [1810000] [1811000] [1812000] [1813000] [1814000] [1815000] [1816000] [1817000] [1818000] [1819000] [1820000] [1821000] [1822000] [1823000] [1824000] [1825000] [1826000] [1827000] [1828000] [1829000] [1830000] [1831000] [1832000] [1833000] [1834000] [1835000] [1836000] [1837000] [1838000] [1839000] [1840000] [1841000] [1842000] [1843000] [1844000] [1845000] [1846000] [1847000] [1848000] [1849000] [1850000] [1851000] [1852000] [1853000] [1854000] [1855000] [1856000] [1857000] [1858000] [1859000] [1860000] [1861000] [1862000] [1863000] [1864000] [1865000] [1866000] [1867000] [1868000] [1869000] [1870000] [1871000] [1872000] [1873000] [1874000] [1875000] [1876000] [1877000] [1878000] [1879000] [1880000] [1881000] [1882000] [1883000] [1884000] [1885000] [1886000] [1887000] [1888000] [1889000] [1890000] [1891000] [1892000] [1893000] [1894000] [1895000] [1896000] [1897000] [1898000] [1899000] [1900000] [1901000] [1902000] [1903000] [1904000] [1905000] [1906000] [1907000] [1908000] [1909000] [1910000] [1911000] [1912000] [1913000] [1914000] [1915000] [1916000] [1917000] [1918000] [1919000] [1920000] [1921000] [1922000] [1923000] [1924000] [1925000] [1926000] [1927000] [1928000] [1929000] [1930000] [1931000] [1932000] [1933000] [1934000] [1935000] [1936000] [1937000] [1938000] [1939000] [1940000] [1941000] [1942000] [1943000] [1944000] [1945000] [1946000] [1947000] [1948000] [1949000] [1950000] [1951000] [1952000] [1953000] [1954000] [1955000] [1956000] [1957000] [1958000] [1959000] [1960000] [1961000] [1962000] [1963000] [1964000] [1965000] [1966000] [1967000] [1968000] [1969000] [1970000] [1971000] [1972000] [1973000] [1974000] [1975000] [1976000] [1977000] [1978000] [1979000] [1980000] [1981000] [1982000] -fusion SPANNING read extraction for scaff: IGH-@-ext--DDX58 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] -fusion SPANNING read extraction for scaff: KPNA6--DISP3 [1000] -fusion SPANNING read extraction for scaff: LINC00381--NKAIN2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] -fusion SPANNING read extraction for scaff: MASTL--YME1L1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] -fusion SPANNING read extraction for scaff: MED12L--PRKCA [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] -fusion SPANNING read extraction for scaff: NCOR1--AC005303.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] [238000] [239000] [240000] [241000] [242000] [243000] [244000] [245000] [246000] [247000] [248000] [249000] [250000] [251000] [252000] [253000] [254000] [255000] [256000] [257000] [258000] [259000] [260000] [261000] -fusion SPANNING read extraction for scaff: NCOR1--LINC02093 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] -fusion SPANNING read extraction for scaff: PHLPP1--SPATA16 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] [103000] [104000] [105000] [106000] [107000] [108000] [109000] [110000] [111000] [112000] [113000] [114000] [115000] [116000] [117000] [118000] [119000] [120000] [121000] [122000] [123000] [124000] [125000] [126000] [127000] [128000] [129000] [130000] [131000] [132000] [133000] [134000] [135000] [136000] [137000] [138000] [139000] [140000] [141000] [142000] [143000] [144000] [145000] [146000] [147000] [148000] [149000] [150000] [151000] [152000] [153000] [154000] [155000] [156000] [157000] [158000] [159000] [160000] [161000] [162000] [163000] [164000] [165000] [166000] [167000] [168000] [169000] [170000] [171000] [172000] [173000] [174000] [175000] [176000] [177000] [178000] [179000] [180000] [181000] [182000] [183000] [184000] [185000] [186000] [187000] [188000] [189000] [190000] [191000] [192000] [193000] [194000] [195000] [196000] [197000] [198000] [199000] [200000] [201000] [202000] [203000] [204000] [205000] [206000] [207000] [208000] [209000] [210000] [211000] [212000] [213000] [214000] [215000] [216000] [217000] [218000] [219000] [220000] [221000] [222000] [223000] [224000] [225000] [226000] [227000] [228000] [229000] [230000] [231000] [232000] [233000] [234000] [235000] [236000] [237000] -fusion SPANNING read extraction for scaff: PKD1P6--IGL@-ext [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] -fusion SPANNING read extraction for scaff: PMS2P8--CCDC146 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] -fusion SPANNING read extraction for scaff: SMC4--SLC66A1L [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] [93000] [94000] [95000] [96000] [97000] [98000] [99000] [100000] [101000] [102000] -fusion SPANNING read extraction for scaff: SMC4--AC079943.2 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] [89000] [90000] [91000] [92000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] -fusion SPANNING read extraction for scaff: TAX1BP1--GLI3 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] [44000] [45000] [46000] [47000] [48000] [49000] [50000] [51000] [52000] [53000] [54000] [55000] [56000] [57000] [58000] [59000] [60000] [61000] [62000] [63000] [64000] [65000] [66000] [67000] [68000] [69000] [70000] [71000] [72000] [73000] [74000] [75000] [76000] [77000] [78000] [79000] [80000] [81000] [82000] [83000] [84000] [85000] [86000] [87000] [88000] -fusion SPANNING read extraction for scaff: TMEM59--CAMTA1 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] [29000] [30000] [31000] [32000] [33000] [34000] [35000] [36000] [37000] [38000] [39000] [40000] [41000] [42000] [43000] -fusion SPANNING read extraction for scaff: TOM1L2--CCDC144B [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4 [1000] [2000] [3000] [4000] [5000] [6000] [7000] [8000] [9000] [10000] [11000] [12000] [13000] [14000] [15000] [16000] [17000] [18000] [19000] [20000] [21000] [22000] [23000] [24000] [25000] [26000] [27000] [28000] -fusion SPANNING read extraction for scaff: ZMYM6--AL606760.4 [1000] [2000] [3000] [4000] [5000] -fusion SPANNING read extraction for scaff: ZNF595--AP004550.1 [1000] [2000] [3000] [4000] [5000] -fusion SPANNING read extraction for scaff: ZNF595--AP001999.3 -filtered reads reasons: $VAR1 = { 'lacks exon overlap' => 22535, 'seq similar region alignment' => 35224 }; Execution Time = 5.60 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1 > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/coalesce_junc_n_span.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj EM: Starting log likelihood: -6351.094759 EM: Round [1] log likelihood: -6344.198262 EM: Round [2] log likelihood: -6341.715087 EM: Round [3] log likelihood: -6340.731449 EM: Round [4] log likelihood: -6340.260938 EM: Round [5] log likelihood: -6339.973977 EM: Round [6] log likelihood: -6339.766189 EM: Round [7] log likelihood: -6339.602690 EM: Round [8] log likelihood: -6339.469236 EM: Round [9] log likelihood: -6339.358276 EM: Round [10] log likelihood: -6339.264942 EM: Round [11] log likelihood: -6339.185740 EM: Round [12] log likelihood: -6339.118025 EM: Round [13] log likelihood: -6339.059728 EM: Round [14] log likelihood: -6339.009203 EM: Round [15] log likelihood: -6338.965123 EM: Round [16] log likelihood: -6338.926407 EM: Round [17] log likelihood: -6338.892171 EM: Round [18] log likelihood: -6338.861686 EM: Round [19] log likelihood: -6338.834350 EM: Round [20] log likelihood: -6338.809663 EM: Round [21] log likelihood: -6338.787213 EM: Round [22] log likelihood: -6338.766652 EM: Round [23] log likelihood: -6338.747693 EM: Round [24] log likelihood: -6338.730095 EM: Round [25] log likelihood: -6338.713658 EM: Round [26] log likelihood: -6338.698212 EM: Round [27] log likelihood: -6338.683617 EM: Round [28] log likelihood: -6338.669753 EM: Round [29] log likelihood: -6338.656521 EM: Round [30] log likelihood: -6338.643838 EM: Round [31] log likelihood: -6338.631633 EM: Round [32] log likelihood: -6338.619846 EM: Round [33] log likelihood: -6338.608428 EM: Round [34] log likelihood: -6338.597335 EM: Round [35] log likelihood: -6338.586532 EM: Round [36] log likelihood: -6338.575989 EM: Round [37] log likelihood: -6338.565680 EM: Round [38] log likelihood: -6338.555583 EM: Round [39] log likelihood: -6338.545680 EM: Round [40] log likelihood: -6338.535953 EM: Round [41] log likelihood: -6338.526390 EM: Round [42] log likelihood: -6338.516979 EM: Round [43] log likelihood: -6338.507710 EM: Round [44] log likelihood: -6338.498574 EM: Round [45] log likelihood: -6338.489563 EM: Round [46] log likelihood: -6338.480671 EM: Round [47] log likelihood: -6338.471891 EM: Round [48] log likelihood: -6338.463220 EM: Round [49] log likelihood: -6338.454651 EM: Round [50] log likelihood: -6338.446182 EM: Round [51] log likelihood: -6338.437809 EM: Round [52] log likelihood: -6338.429528 EM: Round [53] log likelihood: -6338.421337 EM: Round [54] log likelihood: -6338.413233 EM: Round [55] log likelihood: -6338.405213 EM: Round [56] log likelihood: -6338.397275 EM: Round [57] log likelihood: -6338.389417 EM: Round [58] log likelihood: -6338.381638 EM: Round [59] log likelihood: -6338.373935 EM: Round [60] log likelihood: -6338.366307 EM: Round [61] log likelihood: -6338.358753 EM: Round [62] log likelihood: -6338.351270 EM: Round [63] log likelihood: -6338.343857 EM: Round [64] log likelihood: -6338.336514 EM: Round [65] log likelihood: -6338.329238 EM: Round [66] log likelihood: -6338.322029 EM: Round [67] log likelihood: -6338.314885 EM: Round [68] log likelihood: -6338.307805 EM: Round [69] log likelihood: -6338.300788 EM: Round [70] log likelihood: -6338.293833 EM: Round [71] log likelihood: -6338.286940 EM: Round [72] log likelihood: -6338.280106 EM: Round [73] log likelihood: -6338.273331 EM: Round [74] log likelihood: -6338.266615 EM: Round [75] log likelihood: -6338.259956 EM: Round [76] log likelihood: -6338.253353 EM: Round [77] log likelihood: -6338.246805 EM: Round [78] log likelihood: -6338.240312 EM: Round [79] log likelihood: -6338.233873 EM: Round [80] log likelihood: -6338.227487 EM: Round [81] log likelihood: -6338.221154 EM: Round [82] log likelihood: -6338.214871 EM: Round [83] log likelihood: -6338.208640 EM: Round [84] log likelihood: -6338.202458 EM: Round [85] log likelihood: -6338.196326 EM: Round [86] log likelihood: -6338.190242 EM: Round [87] log likelihood: -6338.184207 EM: Round [88] log likelihood: -6338.178218 EM: Round [89] log likelihood: -6338.172276 EM: Round [90] log likelihood: -6338.166381 EM: Round [91] log likelihood: -6338.160530 EM: Round [92] log likelihood: -6338.154724 EM: Round [93] log likelihood: -6338.148963 EM: Round [94] log likelihood: -6338.143245 EM: Round [95] log likelihood: -6338.137570 EM: Round [96] log likelihood: -6338.131937 EM: Round [97] log likelihood: -6338.126346 EM: Round [98] log likelihood: -6338.120797 EM: Round [99] log likelihood: -6338.115288 EM: Round [100] log likelihood: -6338.109819 EM: Round [101] log likelihood: -6338.104391 EM: Round [102] log likelihood: -6338.099001 EM: Round [103] log likelihood: -6338.093650 EM: Round [104] log likelihood: -6338.088338 EM: Round [105] log likelihood: -6338.083063 EM: Round [106] log likelihood: -6338.077826 EM: Round [107] log likelihood: -6338.072626 EM: Round [108] log likelihood: -6338.067462 EM: Round [109] log likelihood: -6338.062334 EM: Round [110] log likelihood: -6338.057241 EM: Round [111] log likelihood: -6338.052184 EM: Round [112] log likelihood: -6338.047161 EM: Round [113] log likelihood: -6338.042173 EM: Round [114] log likelihood: -6338.037218 EM: Round [115] log likelihood: -6338.032297 EM: Round [116] log likelihood: -6338.027410 EM: Round [117] log likelihood: -6338.022555 EM: Round [118] log likelihood: -6338.017732 EM: Round [119] log likelihood: -6338.012941 EM: Round [120] log likelihood: -6338.008182 EM: Round [121] log likelihood: -6338.003454 EM: Round [122] log likelihood: -6337.998757 EM: Round [123] log likelihood: -6337.994091 EM: Round [124] log likelihood: -6337.989454 EM: Round [125] log likelihood: -6337.984848 EM: Round [126] log likelihood: -6337.980271 EM: Round [127] log likelihood: -6337.975724 EM: Round [128] log likelihood: -6337.971205 EM: Round [129] log likelihood: -6337.966715 EM: Round [130] log likelihood: -6337.962254 EM: Round [131] log likelihood: -6337.957820 EM: Round [132] log likelihood: -6337.953414 EM: Round [133] log likelihood: -6337.949035 EM: Round [134] log likelihood: -6337.944684 EM: Round [135] log likelihood: -6337.940359 EM: Round [136] log likelihood: -6337.936061 EM: Round [137] log likelihood: -6337.931789 EM: Round [138] log likelihood: -6337.927544 EM: Round [139] log likelihood: -6337.923324 EM: Round [140] log likelihood: -6337.919129 EM: Round [141] log likelihood: -6337.914960 EM: Round [142] log likelihood: -6337.910815 EM: Round [143] log likelihood: -6337.906695 EM: Round [144] log likelihood: -6337.902600 EM: Round [145] log likelihood: -6337.898529 EM: Round [146] log likelihood: -6337.894482 EM: Round [147] log likelihood: -6337.890459 EM: Round [148] log likelihood: -6337.886459 EM: Round [149] log likelihood: -6337.882482 EM: Round [150] log likelihood: -6337.878529 EM: Round [151] log likelihood: -6337.874598 EM: Round [152] log likelihood: -6337.870690 EM: Round [153] log likelihood: -6337.866804 EM: Round [154] log likelihood: -6337.862941 EM: Round [155] log likelihood: -6337.859099 EM: Round [156] log likelihood: -6337.855279 EM: Round [157] log likelihood: -6337.851481 EM: Round [158] log likelihood: -6337.847704 EM: Round [159] log likelihood: -6337.843948 EM: Round [160] log likelihood: -6337.840213 EM: Round [161] log likelihood: -6337.836499 EM: Round [162] log likelihood: -6337.832805 EM: Round [163] log likelihood: -6337.829132 EM: Round [164] log likelihood: -6337.825479 EM: Round [165] log likelihood: -6337.821846 EM: Round [166] log likelihood: -6337.818233 EM: Round [167] log likelihood: -6337.814639 EM: Round [168] log likelihood: -6337.811065 EM: Round [169] log likelihood: -6337.807510 EM: Round [170] log likelihood: -6337.803975 EM: Round [171] log likelihood: -6337.800458 EM: Round [172] log likelihood: -6337.796960 EM: Round [173] log likelihood: -6337.793481 EM: Round [174] log likelihood: -6337.790020 EM: Round [175] log likelihood: -6337.786577 EM: Round [176] log likelihood: -6337.783153 EM: Round [177] log likelihood: -6337.779746 EM: Round [178] log likelihood: -6337.776357 EM: Round [179] log likelihood: -6337.772986 EM: Round [180] log likelihood: -6337.769633 EM: Round [181] log likelihood: -6337.766297 EM: Round [182] log likelihood: -6337.762978 EM: Round [183] log likelihood: -6337.759676 EM: Round [184] log likelihood: -6337.756391 EM: Round [185] log likelihood: -6337.753123 EM: Round [186] log likelihood: -6337.749871 EM: Round [187] log likelihood: -6337.746636 EM: Round [188] log likelihood: -6337.743418 EM: Round [189] log likelihood: -6337.740215 EM: Round [190] log likelihood: -6337.737029 EM: Round [191] log likelihood: -6337.733859 EM: Round [192] log likelihood: -6337.730704 EM: Round [193] log likelihood: -6337.727565 EM: Round [194] log likelihood: -6337.724442 EM: Round [195] log likelihood: -6337.721334 EM: Round [196] log likelihood: -6337.718242 EM: Round [197] log likelihood: -6337.715165 EM: Round [198] log likelihood: -6337.712103 EM: Round [199] log likelihood: -6337.709056 EM: Round [200] log likelihood: -6337.706024 EM: Round [201] log likelihood: -6337.703006 EM: Round [202] log likelihood: -6337.700003 EM: Round [203] log likelihood: -6337.697015 EM: Round [204] log likelihood: -6337.694041 EM: Round [205] log likelihood: -6337.691081 EM: Round [206] log likelihood: -6337.688135 EM: Round [207] log likelihood: -6337.685204 EM: Round [208] log likelihood: -6337.682286 EM: Round [209] log likelihood: -6337.679383 EM: Round [210] log likelihood: -6337.676493 EM: Round [211] log likelihood: -6337.673617 EM: Round [212] log likelihood: -6337.670754 EM: Round [213] log likelihood: -6337.667904 EM: Round [214] log likelihood: -6337.665068 EM: Round [215] log likelihood: -6337.662246 EM: Round [216] log likelihood: -6337.659436 EM: Round [217] log likelihood: -6337.656639 EM: Round [218] log likelihood: -6337.653856 EM: Round [219] log likelihood: -6337.651085 EM: Round [220] log likelihood: -6337.648327 EM: Round [221] log likelihood: -6337.645581 EM: Round [222] log likelihood: -6337.642848 EM: Round [223] log likelihood: -6337.640128 EM: Round [224] log likelihood: -6337.637420 EM: Round [225] log likelihood: -6337.634724 EM: Round [226] log likelihood: -6337.632041 EM: Round [227] log likelihood: -6337.629369 EM: Round [228] log likelihood: -6337.626710 EM: Round [229] log likelihood: -6337.624063 EM: Round [230] log likelihood: -6337.621427 EM: Round [231] log likelihood: -6337.618803 EM: Round [232] log likelihood: -6337.616191 EM: Round [233] log likelihood: -6337.613590 EM: Round [234] log likelihood: -6337.611001 EM: Round [235] log likelihood: -6337.608424 EM: Round [236] log likelihood: -6337.605858 EM: Round [237] log likelihood: -6337.603303 EM: Round [238] log likelihood: -6337.600759 EM: Round [239] log likelihood: -6337.598227 EM: Round [240] log likelihood: -6337.595705 EM: Round [241] log likelihood: -6337.593194 EM: Round [242] log likelihood: -6337.590695 EM: Round [243] log likelihood: -6337.588206 EM: Round [244] log likelihood: -6337.585728 EM: Round [245] log likelihood: -6337.583261 EM: Round [246] log likelihood: -6337.580804 EM: Round [247] log likelihood: -6337.578358 EM: Round [248] log likelihood: -6337.575922 EM: Round [249] log likelihood: -6337.573496 EM: Round [250] log likelihood: -6337.571081 EM: Round [251] log likelihood: -6337.568677 EM: Round [252] log likelihood: -6337.566282 EM: Round [253] log likelihood: -6337.563898 EM: Round [254] log likelihood: -6337.561523 EM: Round [255] log likelihood: -6337.559159 EM: Round [256] log likelihood: -6337.556804 EM: Round [257] log likelihood: -6337.554460 EM: Round [258] log likelihood: -6337.552125 EM: Round [259] log likelihood: -6337.549800 EM: Round [260] log likelihood: -6337.547484 EM: Round [261] log likelihood: -6337.545178 EM: Round [262] log likelihood: -6337.542882 EM: Round [263] log likelihood: -6337.540595 EM: Round [264] log likelihood: -6337.538318 EM: Round [265] log likelihood: -6337.536050 EM: Round [266] log likelihood: -6337.533791 EM: Round [267] log likelihood: -6337.531542 EM: Round [268] log likelihood: -6337.529301 EM: Round [269] log likelihood: -6337.527070 EM: Round [270] log likelihood: -6337.524848 EM: Round [271] log likelihood: -6337.522635 EM: Round [272] log likelihood: -6337.520431 EM: Round [273] log likelihood: -6337.518236 EM: Round [274] log likelihood: -6337.516049 EM: Round [275] log likelihood: -6337.513872 EM: Round [276] log likelihood: -6337.511703 EM: Round [277] log likelihood: -6337.509543 EM: Round [278] log likelihood: -6337.507391 EM: Round [279] log likelihood: -6337.505248 EM: Round [280] log likelihood: -6337.503114 EM: Round [281] log likelihood: -6337.500988 EM: Round [282] log likelihood: -6337.498870 EM: Round [283] log likelihood: -6337.496761 EM: Round [284] log likelihood: -6337.494660 EM: Round [285] log likelihood: -6337.492568 EM: Round [286] log likelihood: -6337.490483 EM: Round [287] log likelihood: -6337.488407 EM: Round [288] log likelihood: -6337.486339 EM: Round [289] log likelihood: -6337.484279 EM: Round [290] log likelihood: -6337.482227 EM: Round [291] log likelihood: -6337.480183 EM: Round [292] log likelihood: -6337.478147 EM: Round [293] log likelihood: -6337.476119 EM: Round [294] log likelihood: -6337.474098 EM: Round [295] log likelihood: -6337.472086 EM: Round [296] log likelihood: -6337.470081 EM: Round [297] log likelihood: -6337.468084 EM: Round [298] log likelihood: -6337.466094 EM: Round [299] log likelihood: -6337.464112 EM: Round [300] log likelihood: -6337.462138 EM: Round [301] log likelihood: -6337.460171 EM: Round [302] log likelihood: -6337.458212 EM: Round [303] log likelihood: -6337.456260 EM: Round [304] log likelihood: -6337.454316 EM: Round [305] log likelihood: -6337.452378 EM: Round [306] log likelihood: -6337.450449 EM: Round [307] log likelihood: -6337.448526 EM: Round [308] log likelihood: -6337.446611 EM: Round [309] log likelihood: -6337.444703 EM: Round [310] log likelihood: -6337.442802 EM: Round [311] log likelihood: -6337.440908 EM: Round [312] log likelihood: -6337.439021 EM: Round [313] log likelihood: -6337.437141 EM: Round [314] log likelihood: -6337.435268 EM: Round [315] log likelihood: -6337.433403 EM: Round [316] log likelihood: -6337.431544 EM: Round [317] log likelihood: -6337.429691 EM: Round [318] log likelihood: -6337.427846 EM: Round [319] log likelihood: -6337.426008 EM: Round [320] log likelihood: -6337.424176 EM: Round [321] log likelihood: -6337.422351 EM: Round [322] log likelihood: -6337.420533 EM: Round [323] log likelihood: -6337.418721 EM: Round [324] log likelihood: -6337.416916 EM: Round [325] log likelihood: -6337.415118 EM: Round [326] log likelihood: -6337.413326 EM: Round [327] log likelihood: -6337.411540 EM: Round [328] log likelihood: -6337.409761 EM: Round [329] log likelihood: -6337.407989 EM: Round [330] log likelihood: -6337.406223 EM: Round [331] log likelihood: -6337.404463 EM: Round [332] log likelihood: -6337.402709 EM: Round [333] log likelihood: -6337.400962 EM: Round [334] log likelihood: -6337.399221 EM: Round [335] log likelihood: -6337.397487 EM: Round [336] log likelihood: -6337.395758 EM: Round [337] log likelihood: -6337.394036 EM: Round [338] log likelihood: -6337.392320 EM: Round [339] log likelihood: -6337.390610 EM: Round [340] log likelihood: -6337.388906 EM: Round [341] log likelihood: -6337.387208 EM: Round [342] log likelihood: -6337.385516 EM: Round [343] log likelihood: -6337.383830 EM: Round [344] log likelihood: -6337.382150 EM: Round [345] log likelihood: -6337.380476 EM: Round [346] log likelihood: -6337.378807 EM: Round [347] log likelihood: -6337.377145 EM: Round [348] log likelihood: -6337.375488 EM: Round [349] log likelihood: -6337.373838 EM: Round [350] log likelihood: -6337.372193 EM: Round [351] log likelihood: -6337.370553 EM: Round [352] log likelihood: -6337.368920 EM: Round [353] log likelihood: -6337.367292 EM: Round [354] log likelihood: -6337.365669 EM: Round [355] log likelihood: -6337.364053 EM: Round [356] log likelihood: -6337.362442 EM: Round [357] log likelihood: -6337.360836 EM: Round [358] log likelihood: -6337.359236 EM: Round [359] log likelihood: -6337.357642 EM: Round [360] log likelihood: -6337.356053 EM: Round [361] log likelihood: -6337.354469 EM: Round [362] log likelihood: -6337.352891 EM: Round [363] log likelihood: -6337.351318 EM: Round [364] log likelihood: -6337.349751 EM: Round [365] log likelihood: -6337.348189 EM: Round [366] log likelihood: -6337.346632 EM: Round [367] log likelihood: -6337.345080 EM: Round [368] log likelihood: -6337.343534 EM: Round [369] log likelihood: -6337.341993 EM: Round [370] log likelihood: -6337.340457 EM: Round [371] log likelihood: -6337.338927 EM: Round [372] log likelihood: -6337.337401 EM: Round [373] log likelihood: -6337.335881 EM: Round [374] log likelihood: -6337.334366 EM: Round [375] log likelihood: -6337.332856 EM: Round [376] log likelihood: -6337.331351 EM: Round [377] log likelihood: -6337.329850 EM: Round [378] log likelihood: -6337.328355 EM: Round [379] log likelihood: -6337.326865 EM: Round [380] log likelihood: -6337.325380 EM: Round [381] log likelihood: -6337.323900 EM: Round [382] log likelihood: -6337.322425 EM: Round [383] log likelihood: -6337.320955 EM: Round [384] log likelihood: -6337.319489 EM: Round [385] log likelihood: -6337.318028 EM: Round [386] log likelihood: -6337.316573 EM: Round [387] log likelihood: -6337.315122 EM: Round [388] log likelihood: -6337.313675 EM: Round [389] log likelihood: -6337.312234 EM: Round [390] log likelihood: -6337.310797 EM: Round [391] log likelihood: -6337.309365 EM: Round [392] log likelihood: -6337.307938 EM: Round [393] log likelihood: -6337.306515 EM: Round [394] log likelihood: -6337.305097 EM: Round [395] log likelihood: -6337.303683 EM: Round [396] log likelihood: -6337.302275 EM: Round [397] log likelihood: -6337.300870 EM: Round [398] log likelihood: -6337.299471 EM: Round [399] log likelihood: -6337.298075 EM: Round [400] log likelihood: -6337.296685 EM: Round [401] log likelihood: -6337.295299 EM: Round [402] log likelihood: -6337.293917 EM: Round [403] log likelihood: -6337.292540 EM: Round [404] log likelihood: -6337.291167 EM: Round [405] log likelihood: -6337.289798 EM: Round [406] log likelihood: -6337.288434 EM: Round [407] log likelihood: -6337.287075 EM: Round [408] log likelihood: -6337.285719 EM: Round [409] log likelihood: -6337.284368 EM: Round [410] log likelihood: -6337.283022 EM: Round [411] log likelihood: -6337.281679 EM: Round [412] log likelihood: -6337.280341 EM: Round [413] log likelihood: -6337.279007 EM: Round [414] log likelihood: -6337.277678 EM: Round [415] log likelihood: -6337.276352 EM: Round [416] log likelihood: -6337.275031 EM: Round [417] log likelihood: -6337.273714 EM: Round [418] log likelihood: -6337.272401 EM: Round [419] log likelihood: -6337.271092 EM: Round [420] log likelihood: -6337.269788 EM: Round [421] log likelihood: -6337.268487 EM: Round [422] log likelihood: -6337.267191 EM: Round [423] log likelihood: -6337.265898 EM: Round [424] log likelihood: -6337.264610 EM: Round [425] log likelihood: -6337.263326 EM: Round [426] log likelihood: -6337.262045 EM: Round [427] log likelihood: -6337.260769 EM: Round [428] log likelihood: -6337.259497 EM: Round [429] log likelihood: -6337.258228 EM: Round [430] log likelihood: -6337.256964 EM: Round [431] log likelihood: -6337.255704 EM: Round [432] log likelihood: -6337.254447 EM: Round [433] log likelihood: -6337.253194 EM: Round [434] log likelihood: -6337.251946 EM: Round [435] log likelihood: -6337.250701 EM: Round [436] log likelihood: -6337.249459 EM: Round [437] log likelihood: -6337.248222 EM: Round [438] log likelihood: -6337.246989 EM: Round [439] log likelihood: -6337.245759 EM: Round [440] log likelihood: -6337.244533 EM: Round [441] log likelihood: -6337.243311 EM: Round [442] log likelihood: -6337.242093 EM: Round [443] log likelihood: -6337.240878 EM: Round [444] log likelihood: -6337.239667 EM: Round [445] log likelihood: -6337.238460 EM: Round [446] log likelihood: -6337.237256 EM: Round [447] log likelihood: -6337.236056 EM: Round [448] log likelihood: -6337.234860 EM: Round [449] log likelihood: -6337.233667 EM: Round [450] log likelihood: -6337.232478 EM: Round [451] log likelihood: -6337.231293 EM: Round [452] log likelihood: -6337.230111 EM: Round [453] log likelihood: -6337.228932 EM: Round [454] log likelihood: -6337.227758 EM: Round [455] log likelihood: -6337.226587 EM: Round [456] log likelihood: -6337.225419 EM: Round [457] log likelihood: -6337.224255 EM: Round [458] log likelihood: -6337.223094 EM: Round [459] log likelihood: -6337.221937 EM: Round [460] log likelihood: -6337.220783 EM: Round [461] log likelihood: -6337.219633 EM: Round [462] log likelihood: -6337.218486 EM: Round [463] log likelihood: -6337.217343 EM: Round [464] log likelihood: -6337.216203 EM: Round [465] log likelihood: -6337.215066 EM: Round [466] log likelihood: -6337.213933 EM: Round [467] log likelihood: -6337.212803 EM: Round [468] log likelihood: -6337.211677 EM: Round [469] log likelihood: -6337.210554 EM: Round [470] log likelihood: -6337.209434 EM: Round [471] log likelihood: -6337.208318 EM: Round [472] log likelihood: -6337.207204 EM: Round [473] log likelihood: -6337.206095 EM: Round [474] log likelihood: -6337.204988 EM: Round [475] log likelihood: -6337.203885 EM: Round [476] log likelihood: -6337.202785 EM: Round [477] log likelihood: -6337.201688 EM: Round [478] log likelihood: -6337.200594 EM: Round [479] log likelihood: -6337.199504 EM: Round [480] log likelihood: -6337.198416 EM: Round [481] log likelihood: -6337.197332 EM: Round [482] log likelihood: -6337.196251 EM: Round [483] log likelihood: -6337.195174 EM: Round [484] log likelihood: -6337.194099 EM: Round [485] log likelihood: -6337.193028 EM: Round [486] log likelihood: -6337.191959 EM: Round [487] log likelihood: -6337.190894 EM: Round [488] log likelihood: -6337.189832 EM: Round [489] log likelihood: -6337.188773 EM: Round [490] log likelihood: -6337.187717 EM: Round [491] log likelihood: -6337.186664 EM: Round [492] log likelihood: -6337.185614 EM: Round [493] log likelihood: -6337.184568 EM: Round [494] log likelihood: -6337.183524 EM: Round [495] log likelihood: -6337.182483 EM: Round [496] log likelihood: -6337.181445 EM: Round [497] log likelihood: -6337.180410 EM: Round [498] log likelihood: -6337.179379 EM: Round [499] log likelihood: -6337.178350 EM: Round [500] log likelihood: -6337.177324 EM: Round [501] log likelihood: -6337.176301 EM: Round [502] log likelihood: -6337.175281 EM: Round [503] log likelihood: -6337.174264 EM: Round [504] log likelihood: -6337.173250 EM: Round [505] log likelihood: -6337.172238 EM: Round [506] log likelihood: -6337.171230 EM: Round [507] log likelihood: -6337.170224 EM: Round [508] log likelihood: -6337.169222 EM: Round [509] log likelihood: -6337.168222 EM: Round [510] log likelihood: -6337.167225 EM: Round [511] log likelihood: -6337.166231 EM: Round [512] log likelihood: -6337.165239 EM: Round [513] log likelihood: -6337.164251 EM: Round [514] log likelihood: -6337.163265 EM: Round [515] log likelihood: -6337.162282 EM: Round [516] log likelihood: -6337.161302 EM: Round [517] log likelihood: -6337.160324 EM: Round [518] log likelihood: -6337.159350 EM: Round [519] log likelihood: -6337.158378 EM: Round [520] log likelihood: -6337.157409 EM: Round [521] log likelihood: -6337.156442 EM: Round [522] log likelihood: -6337.155478 EM: Round [523] log likelihood: -6337.154517 EM: Round [524] log likelihood: -6337.153559 EM: Round [525] log likelihood: -6337.152603 EM: Round [526] log likelihood: -6337.151650 EM: Round [527] log likelihood: -6337.150700 EM: Round [528] log likelihood: -6337.149752 EM: Round [529] log likelihood: -6337.148807 EM: Round [530] log likelihood: -6337.147865 EM: Round [531] log likelihood: -6337.146925 EM: Round [532] log likelihood: -6337.145988 EM: Round [533] log likelihood: -6337.145054 EM: Round [534] log likelihood: -6337.144122 EM: Round [535] log likelihood: -6337.143192 EM: Round [536] log likelihood: -6337.142265 EM: Round [537] log likelihood: -6337.141341 EM: Round [538] log likelihood: -6337.140420 EM: Round [539] log likelihood: -6337.139500 EM: Round [540] log likelihood: -6337.138584 EM: Round [541] log likelihood: -6337.137670 EM: Round [542] log likelihood: -6337.136758 EM: Round [543] log likelihood: -6337.135849 EM: Round [544] log likelihood: -6337.134943 EM: Round [545] log likelihood: -6337.134039 EM: Round [546] log likelihood: -6337.133137 EM: Round [547] log likelihood: -6337.132238 EM: Round [548] log likelihood: -6337.131341 EM: Round [549] log likelihood: -6337.130447 EM: Round [550] log likelihood: -6337.129555 EM: Round [551] log likelihood: -6337.128666 EM: Round [552] log likelihood: -6337.127779 EM: Round [553] log likelihood: -6337.126895 EM: Round [554] log likelihood: -6337.126013 EM: Round [555] log likelihood: -6337.125133 EM: Round [556] log likelihood: -6337.124256 EM: Round [557] log likelihood: -6337.123381 EM: Round [558] log likelihood: -6337.122509 EM: Round [559] log likelihood: -6337.121639 EM: Round [560] log likelihood: -6337.120771 EM: Round [561] log likelihood: -6337.119905 EM: Round [562] log likelihood: -6337.119042 EM: Round [563] log likelihood: -6337.118182 EM: Round [564] log likelihood: -6337.117323 EM: Round [565] log likelihood: -6337.116467 EM: Round [566] log likelihood: -6337.115614 EM: Round [567] log likelihood: -6337.114762 EM: Round [568] log likelihood: -6337.113913 EM: Round [569] log likelihood: -6337.113066 EM: Round [570] log likelihood: -6337.112221 EM: Round [571] log likelihood: -6337.111379 EM: Round [572] log likelihood: -6337.110539 EM: Round [573] log likelihood: -6337.109701 EM: Round [574] log likelihood: -6337.108866 EM: Round [575] log likelihood: -6337.108032 EM: Round [576] log likelihood: -6337.107201 EM: Round [577] log likelihood: -6337.106372 EM: Round [578] log likelihood: -6337.105546 EM: Round [579] log likelihood: -6337.104721 EM: Round [580] log likelihood: -6337.103899 EM: Round [581] log likelihood: -6337.103079 EM: Round [582] log likelihood: -6337.102261 EM: Round [583] log likelihood: -6337.101445 EM: Round [584] log likelihood: -6337.100632 EM: Round [585] log likelihood: -6337.099820 EM: Round [586] log likelihood: -6337.099011 EM: Round [587] log likelihood: -6337.098204 EM: Round [588] log likelihood: -6337.097399 EM: Round [589] log likelihood: -6337.096596 EM: Round [590] log likelihood: -6337.095796 EM: Round [591] log likelihood: -6337.094997 EM: Round [592] log likelihood: -6337.094201 EM: Round [593] log likelihood: -6337.093406 EM: Round [594] log likelihood: -6337.092614 EM: Round [595] log likelihood: -6337.091824 EM: Round [596] log likelihood: -6337.091036 EM: Round [597] log likelihood: -6337.090250 EM: Round [598] log likelihood: -6337.089466 EM: Round [599] log likelihood: -6337.088684 EM: Round [600] log likelihood: -6337.087904 EM: Round [601] log likelihood: -6337.087126 EM: Round [602] log likelihood: -6337.086350 EM: Round [603] log likelihood: -6337.085577 EM: Round [604] log likelihood: -6337.084805 EM: Round [605] log likelihood: -6337.084035 EM: Round [606] log likelihood: -6337.083267 EM: Round [607] log likelihood: -6337.082502 EM: Round [608] log likelihood: -6337.081738 EM: Round [609] log likelihood: -6337.080976 EM: Round [610] log likelihood: -6337.080217 EM: Round [611] log likelihood: -6337.079459 EM: Round [612] log likelihood: -6337.078703 EM: Round [613] log likelihood: -6337.077949 EM: Round [614] log likelihood: -6337.077198 EM: Round [615] log likelihood: -6337.076448 EM: Round [616] log likelihood: -6337.075700 EM: Round [617] log likelihood: -6337.074954 EM: Round [618] log likelihood: -6337.074210 EM: Round [619] log likelihood: -6337.073467 EM: Round [620] log likelihood: -6337.072727 EM: Round [621] log likelihood: -6337.071989 EM: Round [622] log likelihood: -6337.071252 EM: Round [623] log likelihood: -6337.070518 EM: Round [624] log likelihood: -6337.069785 EM: Round [625] log likelihood: -6337.069055 EM: Round [626] log likelihood: -6337.068326 EM: Round [627] log likelihood: -6337.067599 EM: Round [628] log likelihood: -6337.066874 EM: Round [629] log likelihood: -6337.066150 EM: Round [630] log likelihood: -6337.065429 EM: Round [631] log likelihood: -6337.064709 EM: Round [632] log likelihood: -6337.063992 EM: Round [633] log likelihood: -6337.063276 EM: Round [634] log likelihood: -6337.062562 EM: Round [635] log likelihood: -6337.061849 EM: Round [636] log likelihood: -6337.061139 EM: Round [637] log likelihood: -6337.060431 EM: Round [638] log likelihood: -6337.059724 EM: Round [639] log likelihood: -6337.059019 EM: Round [640] log likelihood: -6337.058316 EM: Round [641] log likelihood: -6337.057614 EM: Round [642] log likelihood: -6337.056915 EM: Round [643] log likelihood: -6337.056217 EM: Round [644] log likelihood: -6337.055521 EM: Round [645] log likelihood: -6337.054826 EM: Round [646] log likelihood: -6337.054134 EM: Round [647] log likelihood: -6337.053443 EM: Round [648] log likelihood: -6337.052754 EM: Round [649] log likelihood: -6337.052067 EM: Round [650] log likelihood: -6337.051381 EM: Round [651] log likelihood: -6337.050698 EM: Round [652] log likelihood: -6337.050015 EM: Round [653] log likelihood: -6337.049335 EM: Round [654] log likelihood: -6337.048656 EM: Round [655] log likelihood: -6337.047980 EM: Round [656] log likelihood: -6337.047304 EM: Round [657] log likelihood: -6337.046631 EM: Round [658] log likelihood: -6337.045959 EM: Round [659] log likelihood: -6337.045289 EM: Round [660] log likelihood: -6337.044620 EM: Round [661] log likelihood: -6337.043954 EM: Round [662] log likelihood: -6337.043289 EM: Round [663] log likelihood: -6337.042625 EM: Round [664] log likelihood: -6337.041963 EM: Round [665] log likelihood: -6337.041303 EM: Round [666] log likelihood: -6337.040645 EM: Round [667] log likelihood: -6337.039988 EM: Round [668] log likelihood: -6337.039333 EM: Round [669] log likelihood: -6337.038679 EM: Round [670] log likelihood: -6337.038027 EM: Round [671] log likelihood: -6337.037377 EM: Round [672] log likelihood: -6337.036728 EM: Round [673] log likelihood: -6337.036081 EM: Round [674] log likelihood: -6337.035436 EM: Round [675] log likelihood: -6337.034792 EM: Round [676] log likelihood: -6337.034150 EM: Round [677] log likelihood: -6337.033509 EM: Round [678] log likelihood: -6337.032870 EM: Round [679] log likelihood: -6337.032233 EM: Round [680] log likelihood: -6337.031597 EM: Round [681] log likelihood: -6337.030963 EM: Round [682] log likelihood: -6337.030330 EM: Round [683] log likelihood: -6337.029699 EM: Round [684] log likelihood: -6337.029069 EM: Round [685] log likelihood: -6337.028441 EM: Round [686] log likelihood: -6337.027815 EM: Round [687] log likelihood: -6337.027190 EM: Round [688] log likelihood: -6337.026566 EM: Round [689] log likelihood: -6337.025945 EM: Round [690] log likelihood: -6337.025324 EM: Round [691] log likelihood: -6337.024705 EM: Round [692] log likelihood: -6337.024088 EM: Round [693] log likelihood: -6337.023472 EM: Round [694] log likelihood: -6337.022858 EM: Round [695] log likelihood: -6337.022245 EM: Round [696] log likelihood: -6337.021634 EM: Round [697] log likelihood: -6337.021024 EM: Round [698] log likelihood: -6337.020416 EM: Round [699] log likelihood: -6337.019809 EM: Round [700] log likelihood: -6337.019204 EM: Round [701] log likelihood: -6337.018600 EM: Round [702] log likelihood: -6337.017998 EM: Round [703] log likelihood: -6337.017397 EM: Round [704] log likelihood: -6337.016798 EM: Round [705] log likelihood: -6337.016200 EM: Round [706] log likelihood: -6337.015604 EM: Round [707] log likelihood: -6337.015009 EM: Round [708] log likelihood: -6337.014415 EM: Round [709] log likelihood: -6337.013823 EM: Round [710] log likelihood: -6337.013233 EM: Round [711] log likelihood: -6337.012643 EM: Round [712] log likelihood: -6337.012056 EM: Round [713] log likelihood: -6337.011469 EM: Round [714] log likelihood: -6337.010884 EM: Round [715] log likelihood: -6337.010301 EM: Round [716] log likelihood: -6337.009719 EM: Round [717] log likelihood: -6337.009138 EM: Round [718] log likelihood: -6337.008559 EM: Round [719] log likelihood: -6337.007981 EM: Round [720] log likelihood: -6337.007405 EM: Round [721] log likelihood: -6337.006829 EM: Round [722] log likelihood: -6337.006256 EM: Round [723] log likelihood: -6337.005684 EM: Round [724] log likelihood: -6337.005113 EM: Round [725] log likelihood: -6337.004543 EM: Round [726] log likelihood: -6337.003975 EM: Round [727] log likelihood: -6337.003408 EM: Round [728] log likelihood: -6337.002843 EM: Round [729] log likelihood: -6337.002279 EM: Round [730] log likelihood: -6337.001716 EM: Round [731] log likelihood: -6337.001155 EM: Round [732] log likelihood: -6337.000595 EM: Round [733] log likelihood: -6337.000036 EM: Round [734] log likelihood: -6336.999479 EM: Round [735] log likelihood: -6336.998923 EM: Round [736] log likelihood: -6336.998368 EM: Round [737] log likelihood: -6336.997815 EM: Round [738] log likelihood: -6336.997263 EM: Round [739] log likelihood: -6336.996712 EM: Round [740] log likelihood: -6336.996163 EM: Round [741] log likelihood: -6336.995615 EM: Round [742] log likelihood: -6336.995068 EM: Round [743] log likelihood: -6336.994523 EM: Round [744] log likelihood: -6336.993979 EM: Round [745] log likelihood: -6336.993436 EM: Round [746] log likelihood: -6336.992894 EM: Round [747] log likelihood: -6336.992354 EM: Round [748] log likelihood: -6336.991815 EM: Round [749] log likelihood: -6336.991278 EM: Round [750] log likelihood: -6336.990741 EM: Round [751] log likelihood: -6336.990206 EM: Round [752] log likelihood: -6336.989672 EM: Round [753] log likelihood: -6336.989140 EM: Round [754] log likelihood: -6336.988609 EM: Round [755] log likelihood: -6336.988079 EM: Round [756] log likelihood: -6336.987550 EM: Round [757] log likelihood: -6336.987022 EM: Round [758] log likelihood: -6336.986496 EM: Round [759] log likelihood: -6336.985971 EM: Round [760] log likelihood: -6336.985447 EM: Round [761] log likelihood: -6336.984925 EM: Round [762] log likelihood: -6336.984403 EM: Round [763] log likelihood: -6336.983883 EM: Round [764] log likelihood: -6336.983365 EM: Round [765] log likelihood: -6336.982847 EM: Round [766] log likelihood: -6336.982331 EM: Round [767] log likelihood: -6336.981815 EM: Round [768] log likelihood: -6336.981301 EM: Round [769] log likelihood: -6336.980789 EM: Round [770] log likelihood: -6336.980277 EM: Round [771] log likelihood: -6336.979767 EM: Round [772] log likelihood: -6336.979258 EM: Round [773] log likelihood: -6336.978750 EM: Round [774] log likelihood: -6336.978243 EM: Round [775] log likelihood: -6336.977738 EM: Round [776] log likelihood: -6336.977233 EM: Round [777] log likelihood: -6336.976730 EM: Round [778] log likelihood: -6336.976228 EM: Round [779] log likelihood: -6336.975727 EM: Round [780] log likelihood: -6336.975228 EM: Round [781] log likelihood: -6336.974729 EM: Round [782] log likelihood: -6336.974232 EM: Round [783] log likelihood: -6336.973736 EM: Round [784] log likelihood: -6336.973241 EM: Round [785] log likelihood: -6336.972747 EM: Round [786] log likelihood: -6336.972254 EM: Round [787] log likelihood: -6336.971763 EM: Round [788] log likelihood: -6336.971272 EM: Round [789] log likelihood: -6336.970783 EM: Round [790] log likelihood: -6336.970295 EM: Round [791] log likelihood: -6336.969808 EM: Round [792] log likelihood: -6336.969322 EM: Round [793] log likelihood: -6336.968838 EM: Round [794] log likelihood: -6336.968354 EM: Round [795] log likelihood: -6336.967872 EM: Round [796] log likelihood: -6336.967391 EM: Round [797] log likelihood: -6336.966910 EM: Round [798] log likelihood: -6336.966431 EM: Round [799] log likelihood: -6336.965953 EM: Round [800] log likelihood: -6336.965477 EM: Round [801] log likelihood: -6336.965001 EM: Round [802] log likelihood: -6336.964526 EM: Round [803] log likelihood: -6336.964053 EM: Round [804] log likelihood: -6336.963580 EM: Round [805] log likelihood: -6336.963109 EM: Round [806] log likelihood: -6336.962639 EM: Round [807] log likelihood: -6336.962169 EM: Round [808] log likelihood: -6336.961701 EM: Round [809] log likelihood: -6336.961234 EM: Round [810] log likelihood: -6336.960769 EM: Round [811] log likelihood: -6336.960304 EM: Round [812] log likelihood: -6336.959840 EM: Round [813] log likelihood: -6336.959377 EM: Round [814] log likelihood: -6336.958916 EM: Round [815] log likelihood: -6336.958455 EM: Round [816] log likelihood: -6336.957996 EM: Round [817] log likelihood: -6336.957537 EM: Round [818] log likelihood: -6336.957080 EM: Round [819] log likelihood: -6336.956623 EM: Round [820] log likelihood: -6336.956168 EM: Round [821] log likelihood: -6336.955714 EM: Round [822] log likelihood: -6336.955261 EM: Round [823] log likelihood: -6336.954809 EM: Round [824] log likelihood: -6336.954357 EM: Round [825] log likelihood: -6336.953907 EM: Round [826] log likelihood: -6336.953458 EM: Round [827] log likelihood: -6336.953010 EM: Round [828] log likelihood: -6336.952563 EM: Round [829] log likelihood: -6336.952117 EM: Round [830] log likelihood: -6336.951672 EM: Round [831] log likelihood: -6336.951228 EM: Round [832] log likelihood: -6336.950786 EM: Round [833] log likelihood: -6336.950344 EM: Round [834] log likelihood: -6336.949903 EM: Round [835] log likelihood: -6336.949463 EM: Round [836] log likelihood: -6336.949024 EM: Round [837] log likelihood: -6336.948586 EM: Round [838] log likelihood: -6336.948149 EM: Round [839] log likelihood: -6336.947713 EM: Round [840] log likelihood: -6336.947278 EM: Round [841] log likelihood: -6336.946845 EM: Round [842] log likelihood: -6336.946412 EM: Round [843] log likelihood: -6336.945980 EM: Round [844] log likelihood: -6336.945549 EM: Round [845] log likelihood: -6336.945119 EM: Round [846] log likelihood: -6336.944690 EM: Round [847] log likelihood: -6336.944262 EM: Round [848] log likelihood: -6336.943835 EM: Round [849] log likelihood: -6336.943409 EM: Round [850] log likelihood: -6336.942984 EM: Round [851] log likelihood: -6336.942560 EM: Round [852] log likelihood: -6336.942136 EM: Round [853] log likelihood: -6336.941714 EM: Round [854] log likelihood: -6336.941293 EM: Round [855] log likelihood: -6336.940873 EM: Round [856] log likelihood: -6336.940453 EM: Round [857] log likelihood: -6336.940035 EM: Round [858] log likelihood: -6336.939617 EM: Round [859] log likelihood: -6336.939201 EM: Round [860] log likelihood: -6336.938785 EM: Round [861] log likelihood: -6336.938371 EM: Round [862] log likelihood: -6336.937957 EM: Round [863] log likelihood: -6336.937544 EM: Round [864] log likelihood: -6336.937132 EM: Round [865] log likelihood: -6336.936722 EM: Round [866] log likelihood: -6336.936312 EM: Round [867] log likelihood: -6336.935903 EM: Round [868] log likelihood: -6336.935494 EM: Round [869] log likelihood: -6336.935087 EM: Round [870] log likelihood: -6336.934681 EM: Round [871] log likelihood: -6336.934276 EM: Round [872] log likelihood: -6336.933871 EM: Round [873] log likelihood: -6336.933467 EM: Round [874] log likelihood: -6336.933065 EM: Round [875] log likelihood: -6336.932663 EM: Round [876] log likelihood: -6336.932262 EM: Round [877] log likelihood: -6336.931862 EM: Round [878] log likelihood: -6336.931463 EM: Round [879] log likelihood: -6336.931065 EM: Round [880] log likelihood: -6336.930668 EM: Round [881] log likelihood: -6336.930271 EM: Round [882] log likelihood: -6336.929876 EM: Round [883] log likelihood: -6336.929481 EM: Round [884] log likelihood: -6336.929088 EM: Round [885] log likelihood: -6336.928695 EM: Round [886] log likelihood: -6336.928303 EM: Round [887] log likelihood: -6336.927912 EM: Round [888] log likelihood: -6336.927522 EM: Round [889] log likelihood: -6336.927132 EM: Round [890] log likelihood: -6336.926744 EM: Round [891] log likelihood: -6336.926356 EM: Round [892] log likelihood: -6336.925970 EM: Round [893] log likelihood: -6336.925584 EM: Round [894] log likelihood: -6336.925199 EM: Round [895] log likelihood: -6336.924815 EM: Round [896] log likelihood: -6336.924431 EM: Round [897] log likelihood: -6336.924049 EM: Round [898] log likelihood: -6336.923667 EM: Round [899] log likelihood: -6336.923286 EM: Round [900] log likelihood: -6336.922907 EM: Round [901] log likelihood: -6336.922528 EM: Round [902] log likelihood: -6336.922149 EM: Round [903] log likelihood: -6336.921772 EM: Round [904] log likelihood: -6336.921395 EM: Round [905] log likelihood: -6336.921020 EM: Round [906] log likelihood: -6336.920645 EM: Round [907] log likelihood: -6336.920271 EM: Round [908] log likelihood: -6336.919898 EM: Round [909] log likelihood: -6336.919525 EM: Round [910] log likelihood: -6336.919154 EM: Round [911] log likelihood: -6336.918783 EM: Round [912] log likelihood: -6336.918413 EM: Round [913] log likelihood: -6336.918044 EM: Round [914] log likelihood: -6336.917676 EM: Round [915] log likelihood: -6336.917308 EM: Round [916] log likelihood: -6336.916942 EM: Round [917] log likelihood: -6336.916576 EM: Round [918] log likelihood: -6336.916211 EM: Round [919] log likelihood: -6336.915847 EM: Round [920] log likelihood: -6336.915483 EM: Round [921] log likelihood: -6336.915121 EM: Round [922] log likelihood: -6336.914759 EM: Round [923] log likelihood: -6336.914398 EM: Round [924] log likelihood: -6336.914038 EM: Round [925] log likelihood: -6336.913678 EM: Round [926] log likelihood: -6336.913320 EM: Round [927] log likelihood: -6336.912962 EM: Round [928] log likelihood: -6336.912605 EM: Round [929] log likelihood: -6336.912249 EM: Round [930] log likelihood: -6336.911893 EM: Round [931] log likelihood: -6336.911538 EM: Round [932] log likelihood: -6336.911185 EM: Round [933] log likelihood: -6336.910831 EM: Round [934] log likelihood: -6336.910479 EM: Round [935] log likelihood: -6336.910127 EM: Round [936] log likelihood: -6336.909777 EM: Round [937] log likelihood: -6336.909427 EM: Round [938] log likelihood: -6336.909077 EM: Round [939] log likelihood: -6336.908729 EM: Round [940] log likelihood: -6336.908381 EM: Round [941] log likelihood: -6336.908034 EM: Round [942] log likelihood: -6336.907688 EM: Round [943] log likelihood: -6336.907342 EM: Round [944] log likelihood: -6336.906998 EM: Round [945] log likelihood: -6336.906654 EM: Round [946] log likelihood: -6336.906311 EM: Round [947] log likelihood: -6336.905968 EM: Round [948] log likelihood: -6336.905626 EM: Round [949] log likelihood: -6336.905285 EM: Round [950] log likelihood: -6336.904945 EM: Round [951] log likelihood: -6336.904606 EM: Round [952] log likelihood: -6336.904267 EM: Round [953] log likelihood: -6336.903929 EM: Round [954] log likelihood: -6336.903592 EM: Round [955] log likelihood: -6336.903255 EM: Round [956] log likelihood: -6336.902920 EM: Round [957] log likelihood: -6336.902584 EM: Round [958] log likelihood: -6336.902250 EM: Round [959] log likelihood: -6336.901917 EM: Round [960] log likelihood: -6336.901584 EM: Round [961] log likelihood: -6336.901252 EM: Round [962] log likelihood: -6336.900920 EM: Round [963] log likelihood: -6336.900589 EM: Round [964] log likelihood: -6336.900259 EM: Round [965] log likelihood: -6336.899930 EM: Round [966] log likelihood: -6336.899602 EM: Round [967] log likelihood: -6336.899274 EM: Round [968] log likelihood: -6336.898947 EM: Round [969] log likelihood: -6336.898620 EM: Round [970] log likelihood: -6336.898295 EM: Round [971] log likelihood: -6336.897970 EM: Round [972] log likelihood: -6336.897645 EM: Round [973] log likelihood: -6336.897322 EM: Round [974] log likelihood: -6336.896999 EM: Round [975] log likelihood: -6336.896677 EM: Round [976] log likelihood: -6336.896355 EM: Round [977] log likelihood: -6336.896034 EM: Round [978] log likelihood: -6336.895714 EM: Round [979] log likelihood: -6336.895395 EM: Round [980] log likelihood: -6336.895076 EM: Round [981] log likelihood: -6336.894758 EM: Round [982] log likelihood: -6336.894441 EM: Round [983] log likelihood: -6336.894124 EM: Round [984] log likelihood: -6336.893808 EM: Round [985] log likelihood: -6336.893493 EM: Round [986] log likelihood: -6336.893178 EM: Round [987] log likelihood: -6336.892865 EM: Round [988] log likelihood: -6336.892551 EM: Round [989] log likelihood: -6336.892239 EM: Round [990] log likelihood: -6336.891927 EM: Round [991] log likelihood: -6336.891616 EM: Round [992] log likelihood: -6336.891305 EM: Round [993] log likelihood: -6336.890995 EM: Round [994] log likelihood: -6336.890686 EM: Round [995] log likelihood: -6336.890377 EM: Round [996] log likelihood: -6336.890070 EM: Round [997] log likelihood: -6336.889762 EM: Round [998] log likelihood: -6336.889456 EM: Round [999] log likelihood: -6336.889150 EM: Round [1000] log likelihood: -6336.888845 EM: Round [1001] log likelihood: -6336.888540 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/init_EM_adj_counts.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/filter_by_frag_threshs.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_extract_junc_reads.ok Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam" [bam_sort_core] merging from 0 files and 8 in-memory blocks... Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam" Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_junc_reads_bam.ok Running: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/samtools_idx_junc_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bam_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bedsort.ok Running: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bgzip.ok Running: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.bed.sorted.bed.gz Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.junction_reads.bam.tabix.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/span_reads_acc.ok Running: samtools view -H /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/init_spanning_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam || : Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa - | samtools sort -@ 8 - -o /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam || : Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_spanning_reads.ok Running: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/samtools_index_span_reads_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bam_to_bed.ok Running: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bedsort.ok Running: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bgzip.ok Running: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed.gz Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.bed.sorted.bed.gz Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.spanning_reads.bam.tabix.ok Running: cp /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/cp_consol_bam.ok Running: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam Execution Time = 0.04 minutes. CMD: samtools index /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/index_consol_bam.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam --max_insert_size 10000000 -extracting read coordinates from /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam into /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords CMD: touch /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.ok CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.read_coords.sort_by_readname CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords.coord_sorted Execution Time = 1.16 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam --max_insert_size 10000000 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_sam_frag_coordss.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.FusionJuncSpan Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.consolidated.bam.frag_coords > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.FusionJuncSpan Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_juncspan_fmt.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_pfam_gff3.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.gff3 > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.Pfam.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_pfam_bed.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf --genome_lib_dir ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_seqsim_gff3.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.bed Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.igv.seqsimilar.bed Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/prep_igv_seqsim_bed.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa > /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/add_splice_info.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 CMD: cp /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl --fusion_preds /tmp/nxf.6Rr8fozmq3/fi_workdir/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/blast_filter.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir -done, see /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/annot_filter.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj EM: Starting log likelihood: -5951.046652 EM: Round [1] log likelihood: -5945.206168 EM: Round [2] log likelihood: -5943.353424 EM: Round [3] log likelihood: -5942.804745 EM: Round [4] log likelihood: -5942.651179 EM: Round [5] log likelihood: -5942.604737 EM: Round [6] log likelihood: -5942.584937 EM: Round [7] log likelihood: -5942.571495 EM: Round [8] log likelihood: -5942.559616 EM: Round [9] log likelihood: -5942.548202 EM: Round [10] log likelihood: -5942.537006 EM: Round [11] log likelihood: -5942.525968 EM: Round [12] log likelihood: -5942.515075 EM: Round [13] log likelihood: -5942.504320 EM: Round [14] log likelihood: -5942.493698 EM: Round [15] log likelihood: -5942.483208 EM: Round [16] log likelihood: -5942.472845 EM: Round [17] log likelihood: -5942.462608 EM: Round [18] log likelihood: -5942.452493 EM: Round [19] log likelihood: -5942.442498 EM: Round [20] log likelihood: -5942.432620 EM: Round [21] log likelihood: -5942.422856 EM: Round [22] log likelihood: -5942.413205 EM: Round [23] log likelihood: -5942.403663 EM: Round [24] log likelihood: -5942.394229 EM: Round [25] log likelihood: -5942.384900 EM: Round [26] log likelihood: -5942.375675 EM: Round [27] log likelihood: -5942.366550 EM: Round [28] log likelihood: -5942.357525 EM: Round [29] log likelihood: -5942.348597 EM: Round [30] log likelihood: -5942.339764 EM: Round [31] log likelihood: -5942.331024 EM: Round [32] log likelihood: -5942.322377 EM: Round [33] log likelihood: -5942.313819 EM: Round [34] log likelihood: -5942.305349 EM: Round [35] log likelihood: -5942.296966 EM: Round [36] log likelihood: -5942.288668 EM: Round [37] log likelihood: -5942.280453 EM: Round [38] log likelihood: -5942.272320 EM: Round [39] log likelihood: -5942.264267 EM: Round [40] log likelihood: -5942.256294 EM: Round [41] log likelihood: -5942.248398 EM: Round [42] log likelihood: -5942.240579 EM: Round [43] log likelihood: -5942.232834 EM: Round [44] log likelihood: -5942.225163 EM: Round [45] log likelihood: -5942.217564 EM: Round [46] log likelihood: -5942.210037 EM: Round [47] log likelihood: -5942.202579 EM: Round [48] log likelihood: -5942.195191 EM: Round [49] log likelihood: -5942.187870 EM: Round [50] log likelihood: -5942.180615 EM: Round [51] log likelihood: -5942.173426 EM: Round [52] log likelihood: -5942.166302 EM: Round [53] log likelihood: -5942.159241 EM: Round [54] log likelihood: -5942.152242 EM: Round [55] log likelihood: -5942.145305 EM: Round [56] log likelihood: -5942.138428 EM: Round [57] log likelihood: -5942.131611 EM: Round [58] log likelihood: -5942.124852 EM: Round [59] log likelihood: -5942.118151 EM: Round [60] log likelihood: -5942.111507 EM: Round [61] log likelihood: -5942.104919 EM: Round [62] log likelihood: -5942.098386 EM: Round [63] log likelihood: -5942.091907 EM: Round [64] log likelihood: -5942.085482 EM: Round [65] log likelihood: -5942.079110 EM: Round [66] log likelihood: -5942.072789 EM: Round [67] log likelihood: -5942.066520 EM: Round [68] log likelihood: -5942.060302 EM: Round [69] log likelihood: -5942.054133 EM: Round [70] log likelihood: -5942.048013 EM: Round [71] log likelihood: -5942.041942 EM: Round [72] log likelihood: -5942.035919 EM: Round [73] log likelihood: -5942.029942 EM: Round [74] log likelihood: -5942.024012 EM: Round [75] log likelihood: -5942.018128 EM: Round [76] log likelihood: -5942.012289 EM: Round [77] log likelihood: -5942.006494 EM: Round [78] log likelihood: -5942.000744 EM: Round [79] log likelihood: -5941.995037 EM: Round [80] log likelihood: -5941.989373 EM: Round [81] log likelihood: -5941.983751 EM: Round [82] log likelihood: -5941.978170 EM: Round [83] log likelihood: -5941.972631 EM: Round [84] log likelihood: -5941.967133 EM: Round [85] log likelihood: -5941.961675 EM: Round [86] log likelihood: -5941.956256 EM: Round [87] log likelihood: -5941.950876 EM: Round [88] log likelihood: -5941.945535 EM: Round [89] log likelihood: -5941.940233 EM: Round [90] log likelihood: -5941.934968 EM: Round [91] log likelihood: -5941.929740 EM: Round [92] log likelihood: -5941.924549 EM: Round [93] log likelihood: -5941.919394 EM: Round [94] log likelihood: -5941.914275 EM: Round [95] log likelihood: -5941.909191 EM: Round [96] log likelihood: -5941.904143 EM: Round [97] log likelihood: -5941.899129 EM: Round [98] log likelihood: -5941.894149 EM: Round [99] log likelihood: -5941.889203 EM: Round [100] log likelihood: -5941.884291 EM: Round [101] log likelihood: -5941.879411 EM: Round [102] log likelihood: -5941.874565 EM: Round [103] log likelihood: -5941.869750 EM: Round [104] log likelihood: -5941.864967 EM: Round [105] log likelihood: -5941.860216 EM: Round [106] log likelihood: -5941.855496 EM: Round [107] log likelihood: -5941.850807 EM: Round [108] log likelihood: -5941.846148 EM: Round [109] log likelihood: -5941.841520 EM: Round [110] log likelihood: -5941.836921 EM: Round [111] log likelihood: -5941.832352 EM: Round [112] log likelihood: -5941.827811 EM: Round [113] log likelihood: -5941.823300 EM: Round [114] log likelihood: -5941.818817 EM: Round [115] log likelihood: -5941.814363 EM: Round [116] log likelihood: -5941.809936 EM: Round [117] log likelihood: -5941.805537 EM: Round [118] log likelihood: -5941.801166 EM: Round [119] log likelihood: -5941.796821 EM: Round [120] log likelihood: -5941.792503 EM: Round [121] log likelihood: -5941.788212 EM: Round [122] log likelihood: -5941.783947 EM: Round [123] log likelihood: -5941.779707 EM: Round [124] log likelihood: -5941.775494 EM: Round [125] log likelihood: -5941.771306 EM: Round [126] log likelihood: -5941.767143 EM: Round [127] log likelihood: -5941.763004 EM: Round [128] log likelihood: -5941.758891 EM: Round [129] log likelihood: -5941.754802 EM: Round [130] log likelihood: -5941.750737 EM: Round [131] log likelihood: -5941.746696 EM: Round [132] log likelihood: -5941.742678 EM: Round [133] log likelihood: -5941.738685 EM: Round [134] log likelihood: -5941.734714 EM: Round [135] log likelihood: -5941.730766 EM: Round [136] log likelihood: -5941.726841 EM: Round [137] log likelihood: -5941.722939 EM: Round [138] log likelihood: -5941.719059 EM: Round [139] log likelihood: -5941.715201 EM: Round [140] log likelihood: -5941.711365 EM: Round [141] log likelihood: -5941.707550 EM: Round [142] log likelihood: -5941.703757 EM: Round [143] log likelihood: -5941.699986 EM: Round [144] log likelihood: -5941.696235 EM: Round [145] log likelihood: -5941.692506 EM: Round [146] log likelihood: -5941.688797 EM: Round [147] log likelihood: -5941.685108 EM: Round [148] log likelihood: -5941.681440 EM: Round [149] log likelihood: -5941.677792 EM: Round [150] log likelihood: -5941.674164 EM: Round [151] log likelihood: -5941.670556 EM: Round [152] log likelihood: -5941.666968 EM: Round [153] log likelihood: -5941.663398 EM: Round [154] log likelihood: -5941.659849 EM: Round [155] log likelihood: -5941.656318 EM: Round [156] log likelihood: -5941.652806 EM: Round [157] log likelihood: -5941.649312 EM: Round [158] log likelihood: -5941.645838 EM: Round [159] log likelihood: -5941.642382 EM: Round [160] log likelihood: -5941.638944 EM: Round [161] log likelihood: -5941.635524 EM: Round [162] log likelihood: -5941.632122 EM: Round [163] log likelihood: -5941.628737 EM: Round [164] log likelihood: -5941.625371 EM: Round [165] log likelihood: -5941.622022 EM: Round [166] log likelihood: -5941.618690 EM: Round [167] log likelihood: -5941.615375 EM: Round [168] log likelihood: -5941.612078 EM: Round [169] log likelihood: -5941.608797 EM: Round [170] log likelihood: -5941.605533 EM: Round [171] log likelihood: -5941.602286 EM: Round [172] log likelihood: -5941.599055 EM: Round [173] log likelihood: -5941.595841 EM: Round [174] log likelihood: -5941.592642 EM: Round [175] log likelihood: -5941.589460 EM: Round [176] log likelihood: -5941.586294 EM: Round [177] log likelihood: -5941.583143 EM: Round [178] log likelihood: -5941.580009 EM: Round [179] log likelihood: -5941.576889 EM: Round [180] log likelihood: -5941.573785 EM: Round [181] log likelihood: -5941.570697 EM: Round [182] log likelihood: -5941.567624 EM: Round [183] log likelihood: -5941.564565 EM: Round [184] log likelihood: -5941.561522 EM: Round [185] log likelihood: -5941.558494 EM: Round [186] log likelihood: -5941.555480 EM: Round [187] log likelihood: -5941.552481 EM: Round [188] log likelihood: -5941.549496 EM: Round [189] log likelihood: -5941.546525 EM: Round [190] log likelihood: -5941.543569 EM: Round [191] log likelihood: -5941.540627 EM: Round [192] log likelihood: -5941.537699 EM: Round [193] log likelihood: -5941.534785 EM: Round [194] log likelihood: -5941.531885 EM: Round [195] log likelihood: -5941.528999 EM: Round [196] log likelihood: -5941.526126 EM: Round [197] log likelihood: -5941.523267 EM: Round [198] log likelihood: -5941.520421 EM: Round [199] log likelihood: -5941.517588 EM: Round [200] log likelihood: -5941.514768 EM: Round [201] log likelihood: -5941.511962 EM: Round [202] log likelihood: -5941.509169 EM: Round [203] log likelihood: -5941.506388 EM: Round [204] log likelihood: -5941.503621 EM: Round [205] log likelihood: -5941.500866 EM: Round [206] log likelihood: -5941.498124 EM: Round [207] log likelihood: -5941.495394 EM: Round [208] log likelihood: -5941.492677 EM: Round [209] log likelihood: -5941.489972 EM: Round [210] log likelihood: -5941.487279 EM: Round [211] log likelihood: -5941.484599 EM: Round [212] log likelihood: -5941.481930 EM: Round [213] log likelihood: -5941.479274 EM: Round [214] log likelihood: -5941.476630 EM: Round [215] log likelihood: -5941.473997 EM: Round [216] log likelihood: -5941.471376 EM: Round [217] log likelihood: -5941.468767 EM: Round [218] log likelihood: -5941.466169 EM: Round [219] log likelihood: -5941.463583 EM: Round [220] log likelihood: -5941.461009 EM: Round [221] log likelihood: -5941.458445 EM: Round [222] log likelihood: -5941.455893 EM: Round [223] log likelihood: -5941.453352 EM: Round [224] log likelihood: -5941.450823 EM: Round [225] log likelihood: -5941.448304 EM: Round [226] log likelihood: -5941.445796 EM: Round [227] log likelihood: -5941.443299 EM: Round [228] log likelihood: -5941.440813 EM: Round [229] log likelihood: -5941.438338 EM: Round [230] log likelihood: -5941.435873 EM: Round [231] log likelihood: -5941.433419 EM: Round [232] log likelihood: -5941.430975 EM: Round [233] log likelihood: -5941.428542 EM: Round [234] log likelihood: -5941.426120 EM: Round [235] log likelihood: -5941.423707 EM: Round [236] log likelihood: -5941.421305 EM: Round [237] log likelihood: -5941.418913 EM: Round [238] log likelihood: -5941.416531 EM: Round [239] log likelihood: -5941.414159 EM: Round [240] log likelihood: -5941.411797 EM: Round [241] log likelihood: -5941.409445 EM: Round [242] log likelihood: -5941.407103 EM: Round [243] log likelihood: -5941.404771 EM: Round [244] log likelihood: -5941.402448 EM: Round [245] log likelihood: -5941.400135 EM: Round [246] log likelihood: -5941.397832 EM: Round [247] log likelihood: -5941.395538 EM: Round [248] log likelihood: -5941.393253 EM: Round [249] log likelihood: -5941.390978 EM: Round [250] log likelihood: -5941.388713 EM: Round [251] log likelihood: -5941.386456 EM: Round [252] log likelihood: -5941.384209 EM: Round [253] log likelihood: -5941.381971 EM: Round [254] log likelihood: -5941.379742 EM: Round [255] log likelihood: -5941.377522 EM: Round [256] log likelihood: -5941.375312 EM: Round [257] log likelihood: -5941.373110 EM: Round [258] log likelihood: -5941.370917 EM: Round [259] log likelihood: -5941.368733 EM: Round [260] log likelihood: -5941.366557 EM: Round [261] log likelihood: -5941.364391 EM: Round [262] log likelihood: -5941.362233 EM: Round [263] log likelihood: -5941.360083 EM: Round [264] log likelihood: -5941.357942 EM: Round [265] log likelihood: -5941.355810 EM: Round [266] log likelihood: -5941.353686 EM: Round [267] log likelihood: -5941.351571 EM: Round [268] log likelihood: -5941.349464 EM: Round [269] log likelihood: -5941.347365 EM: Round [270] log likelihood: -5941.345275 EM: Round [271] log likelihood: -5941.343192 EM: Round [272] log likelihood: -5941.341118 EM: Round [273] log likelihood: -5941.339052 EM: Round [274] log likelihood: -5941.336994 EM: Round [275] log likelihood: -5941.334944 EM: Round [276] log likelihood: -5941.332902 EM: Round [277] log likelihood: -5941.330868 EM: Round [278] log likelihood: -5941.328842 EM: Round [279] log likelihood: -5941.326823 EM: Round [280] log likelihood: -5941.324813 EM: Round [281] log likelihood: -5941.322810 EM: Round [282] log likelihood: -5941.320815 EM: Round [283] log likelihood: -5941.318827 EM: Round [284] log likelihood: -5941.316847 EM: Round [285] log likelihood: -5941.314875 EM: Round [286] log likelihood: -5941.312910 EM: Round [287] log likelihood: -5941.310953 EM: Round [288] log likelihood: -5941.309003 EM: Round [289] log likelihood: -5941.307060 EM: Round [290] log likelihood: -5941.305125 EM: Round [291] log likelihood: -5941.303197 EM: Round [292] log likelihood: -5941.301276 EM: Round [293] log likelihood: -5941.299363 EM: Round [294] log likelihood: -5941.297456 EM: Round [295] log likelihood: -5941.295557 EM: Round [296] log likelihood: -5941.293665 EM: Round [297] log likelihood: -5941.291780 EM: Round [298] log likelihood: -5941.289902 EM: Round [299] log likelihood: -5941.288031 EM: Round [300] log likelihood: -5941.286167 EM: Round [301] log likelihood: -5941.284309 EM: Round [302] log likelihood: -5941.282459 EM: Round [303] log likelihood: -5941.280616 EM: Round [304] log likelihood: -5941.278779 EM: Round [305] log likelihood: -5941.276949 EM: Round [306] log likelihood: -5941.275126 EM: Round [307] log likelihood: -5941.273309 EM: Round [308] log likelihood: -5941.271499 EM: Round [309] log likelihood: -5941.269696 EM: Round [310] log likelihood: -5941.267899 EM: Round [311] log likelihood: -5941.266108 EM: Round [312] log likelihood: -5941.264325 EM: Round [313] log likelihood: -5941.262547 EM: Round [314] log likelihood: -5941.260776 EM: Round [315] log likelihood: -5941.259012 EM: Round [316] log likelihood: -5941.257254 EM: Round [317] log likelihood: -5941.255502 EM: Round [318] log likelihood: -5941.253756 EM: Round [319] log likelihood: -5941.252017 EM: Round [320] log likelihood: -5941.250284 EM: Round [321] log likelihood: -5941.248557 EM: Round [322] log likelihood: -5941.246836 EM: Round [323] log likelihood: -5941.245122 EM: Round [324] log likelihood: -5941.243413 EM: Round [325] log likelihood: -5941.241711 EM: Round [326] log likelihood: -5941.240014 EM: Round [327] log likelihood: -5941.238324 EM: Round [328] log likelihood: -5941.236639 EM: Round [329] log likelihood: -5941.234961 EM: Round [330] log likelihood: -5941.233288 EM: Round [331] log likelihood: -5941.231621 EM: Round [332] log likelihood: -5941.229960 EM: Round [333] log likelihood: -5941.228305 EM: Round [334] log likelihood: -5941.226656 EM: Round [335] log likelihood: -5941.225012 EM: Round [336] log likelihood: -5941.223375 EM: Round [337] log likelihood: -5941.221742 EM: Round [338] log likelihood: -5941.220116 EM: Round [339] log likelihood: -5941.218495 EM: Round [340] log likelihood: -5941.216880 EM: Round [341] log likelihood: -5941.215270 EM: Round [342] log likelihood: -5941.213666 EM: Round [343] log likelihood: -5941.212067 EM: Round [344] log likelihood: -5941.210474 EM: Round [345] log likelihood: -5941.208886 EM: Round [346] log likelihood: -5941.207304 EM: Round [347] log likelihood: -5941.205727 EM: Round [348] log likelihood: -5941.204156 EM: Round [349] log likelihood: -5941.202590 EM: Round [350] log likelihood: -5941.201029 EM: Round [351] log likelihood: -5941.199474 EM: Round [352] log likelihood: -5941.197924 EM: Round [353] log likelihood: -5941.196379 EM: Round [354] log likelihood: -5941.194839 EM: Round [355] log likelihood: -5941.193305 EM: Round [356] log likelihood: -5941.191775 EM: Round [357] log likelihood: -5941.190251 EM: Round [358] log likelihood: -5941.188732 EM: Round [359] log likelihood: -5941.187218 EM: Round [360] log likelihood: -5941.185709 EM: Round [361] log likelihood: -5941.184205 EM: Round [362] log likelihood: -5941.182707 EM: Round [363] log likelihood: -5941.181213 EM: Round [364] log likelihood: -5941.179724 EM: Round [365] log likelihood: -5941.178240 EM: Round [366] log likelihood: -5941.176761 EM: Round [367] log likelihood: -5941.175287 EM: Round [368] log likelihood: -5941.173818 EM: Round [369] log likelihood: -5941.172354 EM: Round [370] log likelihood: -5941.170895 EM: Round [371] log likelihood: -5941.169440 EM: Round [372] log likelihood: -5941.167990 EM: Round [373] log likelihood: -5941.166545 EM: Round [374] log likelihood: -5941.165105 EM: Round [375] log likelihood: -5941.163669 EM: Round [376] log likelihood: -5941.162238 EM: Round [377] log likelihood: -5941.160812 EM: Round [378] log likelihood: -5941.159391 EM: Round [379] log likelihood: -5941.157974 EM: Round [380] log likelihood: -5941.156561 EM: Round [381] log likelihood: -5941.155154 EM: Round [382] log likelihood: -5941.153751 EM: Round [383] log likelihood: -5941.152352 EM: Round [384] log likelihood: -5941.150958 EM: Round [385] log likelihood: -5941.149568 EM: Round [386] log likelihood: -5941.148183 EM: Round [387] log likelihood: -5941.146803 EM: Round [388] log likelihood: -5941.145427 EM: Round [389] log likelihood: -5941.144055 EM: Round [390] log likelihood: -5941.142688 EM: Round [391] log likelihood: -5941.141325 EM: Round [392] log likelihood: -5941.139966 EM: Round [393] log likelihood: -5941.138612 EM: Round [394] log likelihood: -5941.137262 EM: Round [395] log likelihood: -5941.135916 EM: Round [396] log likelihood: -5941.134575 EM: Round [397] log likelihood: -5941.133238 EM: Round [398] log likelihood: -5941.131905 EM: Round [399] log likelihood: -5941.130577 EM: Round [400] log likelihood: -5941.129252 EM: Round [401] log likelihood: -5941.127932 EM: Round [402] log likelihood: -5941.126616 EM: Round [403] log likelihood: -5941.125304 EM: Round [404] log likelihood: -5941.123997 EM: Round [405] log likelihood: -5941.122693 EM: Round [406] log likelihood: -5941.121394 EM: Round [407] log likelihood: -5941.120098 EM: Round [408] log likelihood: -5941.118807 EM: Round [409] log likelihood: -5941.117519 EM: Round [410] log likelihood: -5941.116236 EM: Round [411] log likelihood: -5941.114957 EM: Round [412] log likelihood: -5941.113682 EM: Round [413] log likelihood: -5941.112410 EM: Round [414] log likelihood: -5941.111143 EM: Round [415] log likelihood: -5941.109880 EM: Round [416] log likelihood: -5941.108620 EM: Round [417] log likelihood: -5941.107364 EM: Round [418] log likelihood: -5941.106113 EM: Round [419] log likelihood: -5941.104865 EM: Round [420] log likelihood: -5941.103621 EM: Round [421] log likelihood: -5941.102381 EM: Round [422] log likelihood: -5941.101144 EM: Round [423] log likelihood: -5941.099912 EM: Round [424] log likelihood: -5941.098683 EM: Round [425] log likelihood: -5941.097458 EM: Round [426] log likelihood: -5941.096237 EM: Round [427] log likelihood: -5941.095020 EM: Round [428] log likelihood: -5941.093806 EM: Round [429] log likelihood: -5941.092596 EM: Round [430] log likelihood: -5941.091389 EM: Round [431] log likelihood: -5941.090187 EM: Round [432] log likelihood: -5941.088988 EM: Round [433] log likelihood: -5941.087792 EM: Round [434] log likelihood: -5941.086601 EM: Round [435] log likelihood: -5941.085412 EM: Round [436] log likelihood: -5941.084228 EM: Round [437] log likelihood: -5941.083047 EM: Round [438] log likelihood: -5941.081870 EM: Round [439] log likelihood: -5941.080696 EM: Round [440] log likelihood: -5941.079525 EM: Round [441] log likelihood: -5941.078359 EM: Round [442] log likelihood: -5941.077195 EM: Round [443] log likelihood: -5941.076036 EM: Round [444] log likelihood: -5941.074879 EM: Round [445] log likelihood: -5941.073727 EM: Round [446] log likelihood: -5941.072577 EM: Round [447] log likelihood: -5941.071431 EM: Round [448] log likelihood: -5941.070289 EM: Round [449] log likelihood: -5941.069150 EM: Round [450] log likelihood: -5941.068014 EM: Round [451] log likelihood: -5941.066882 EM: Round [452] log likelihood: -5941.065753 EM: Round [453] log likelihood: -5941.064627 EM: Round [454] log likelihood: -5941.063505 EM: Round [455] log likelihood: -5941.062386 EM: Round [456] log likelihood: -5941.061270 EM: Round [457] log likelihood: -5941.060158 EM: Round [458] log likelihood: -5941.059049 EM: Round [459] log likelihood: -5941.057943 EM: Round [460] log likelihood: -5941.056840 EM: Round [461] log likelihood: -5941.055741 EM: Round [462] log likelihood: -5941.054645 EM: Round [463] log likelihood: -5941.053552 EM: Round [464] log likelihood: -5941.052463 EM: Round [465] log likelihood: -5941.051376 EM: Round [466] log likelihood: -5941.050293 EM: Round [467] log likelihood: -5941.049213 EM: Round [468] log likelihood: -5941.048136 EM: Round [469] log likelihood: -5941.047062 EM: Round [470] log likelihood: -5941.045992 EM: Round [471] log likelihood: -5941.044924 EM: Round [472] log likelihood: -5941.043860 EM: Round [473] log likelihood: -5941.042798 EM: Round [474] log likelihood: -5941.041740 EM: Round [475] log likelihood: -5941.040685 EM: Round [476] log likelihood: -5941.039633 EM: Round [477] log likelihood: -5941.038584 EM: Round [478] log likelihood: -5941.037538 EM: Round [479] log likelihood: -5941.036495 EM: Round [480] log likelihood: -5941.035455 EM: Round [481] log likelihood: -5941.034417 EM: Round [482] log likelihood: -5941.033383 EM: Round [483] log likelihood: -5941.032352 EM: Round [484] log likelihood: -5941.031324 EM: Round [485] log likelihood: -5941.030299 EM: Round [486] log likelihood: -5941.029277 EM: Round [487] log likelihood: -5941.028258 EM: Round [488] log likelihood: -5941.027241 EM: Round [489] log likelihood: -5941.026228 EM: Round [490] log likelihood: -5941.025217 EM: Round [491] log likelihood: -5941.024209 EM: Round [492] log likelihood: -5941.023205 EM: Round [493] log likelihood: -5941.022203 EM: Round [494] log likelihood: -5941.021204 EM: Round [495] log likelihood: -5941.020207 EM: Round [496] log likelihood: -5941.019214 EM: Round [497] log likelihood: -5941.018223 EM: Round [498] log likelihood: -5941.017235 EM: Round [499] log likelihood: -5941.016250 EM: Round [500] log likelihood: -5941.015268 EM: Round [501] log likelihood: -5941.014289 EM: Round [502] log likelihood: -5941.013312 EM: Round [503] log likelihood: -5941.012338 EM: Round [504] log likelihood: -5941.011367 EM: Round [505] log likelihood: -5941.010398 EM: Round [506] log likelihood: -5941.009432 EM: Round [507] log likelihood: -5941.008469 EM: Round [508] log likelihood: -5941.007509 EM: Round [509] log likelihood: -5941.006551 EM: Round [510] log likelihood: -5941.005596 EM: Round [511] log likelihood: -5941.004644 EM: Round [512] log likelihood: -5941.003694 EM: Round [513] log likelihood: -5941.002747 EM: Round [514] log likelihood: -5941.001803 EM: Round [515] log likelihood: -5941.000861 EM: Round [516] log likelihood: -5940.999922 EM: Round [517] log likelihood: -5940.998986 EM: Round [518] log likelihood: -5940.998052 EM: Round [519] log likelihood: -5940.997120 EM: Round [520] log likelihood: -5940.996192 EM: Round [521] log likelihood: -5940.995265 EM: Round [522] log likelihood: -5940.994342 EM: Round [523] log likelihood: -5940.993421 EM: Round [524] log likelihood: -5940.992502 EM: Round [525] log likelihood: -5940.991586 EM: Round [526] log likelihood: -5940.990673 EM: Round [527] log likelihood: -5940.989762 EM: Round [528] log likelihood: -5940.988854 EM: Round [529] log likelihood: -5940.987948 EM: Round [530] log likelihood: -5940.987044 EM: Round [531] log likelihood: -5940.986143 EM: Round [532] log likelihood: -5940.985245 EM: Round [533] log likelihood: -5940.984349 EM: Round [534] log likelihood: -5940.983455 EM: Round [535] log likelihood: -5940.982564 EM: Round [536] log likelihood: -5940.981676 EM: Round [537] log likelihood: -5940.980789 EM: Round [538] log likelihood: -5940.979905 EM: Round [539] log likelihood: -5940.979024 EM: Round [540] log likelihood: -5940.978145 EM: Round [541] log likelihood: -5940.977268 EM: Round [542] log likelihood: -5940.976394 EM: Round [543] log likelihood: -5940.975522 EM: Round [544] log likelihood: -5940.974653 EM: Round [545] log likelihood: -5940.973786 EM: Round [546] log likelihood: -5940.972921 EM: Round [547] log likelihood: -5940.972058 EM: Round [548] log likelihood: -5940.971198 EM: Round [549] log likelihood: -5940.970340 EM: Round [550] log likelihood: -5940.969485 EM: Round [551] log likelihood: -5940.968632 EM: Round [552] log likelihood: -5940.967781 EM: Round [553] log likelihood: -5940.966932 EM: Round [554] log likelihood: -5940.966086 EM: Round [555] log likelihood: -5940.965242 EM: Round [556] log likelihood: -5940.964400 EM: Round [557] log likelihood: -5940.963561 EM: Round [558] log likelihood: -5940.962724 EM: Round [559] log likelihood: -5940.961888 EM: Round [560] log likelihood: -5940.961056 EM: Round [561] log likelihood: -5940.960225 EM: Round [562] log likelihood: -5940.959397 EM: Round [563] log likelihood: -5940.958571 EM: Round [564] log likelihood: -5940.957747 EM: Round [565] log likelihood: -5940.956925 EM: Round [566] log likelihood: -5940.956106 EM: Round [567] log likelihood: -5940.955288 EM: Round [568] log likelihood: -5940.954473 EM: Round [569] log likelihood: -5940.953660 EM: Round [570] log likelihood: -5940.952849 EM: Round [571] log likelihood: -5940.952041 EM: Round [572] log likelihood: -5940.951234 EM: Round [573] log likelihood: -5940.950430 EM: Round [574] log likelihood: -5940.949627 EM: Round [575] log likelihood: -5940.948827 EM: Round [576] log likelihood: -5940.948029 EM: Round [577] log likelihood: -5940.947233 EM: Round [578] log likelihood: -5940.946439 EM: Round [579] log likelihood: -5940.945648 EM: Round [580] log likelihood: -5940.944858 EM: Round [581] log likelihood: -5940.944070 EM: Round [582] log likelihood: -5940.943285 EM: Round [583] log likelihood: -5940.942501 EM: Round [584] log likelihood: -5940.941720 EM: Round [585] log likelihood: -5940.940941 EM: Round [586] log likelihood: -5940.940163 EM: Round [587] log likelihood: -5940.939388 EM: Round [588] log likelihood: -5940.938615 EM: Round [589] log likelihood: -5940.937844 EM: Round [590] log likelihood: -5940.937074 EM: Round [591] log likelihood: -5940.936307 EM: Round [592] log likelihood: -5940.935542 EM: Round [593] log likelihood: -5940.934779 EM: Round [594] log likelihood: -5940.934018 EM: Round [595] log likelihood: -5940.933258 EM: Round [596] log likelihood: -5940.932501 EM: Round [597] log likelihood: -5940.931746 EM: Round [598] log likelihood: -5940.930993 EM: Round [599] log likelihood: -5940.930241 EM: Round [600] log likelihood: -5940.929492 EM: Round [601] log likelihood: -5940.928744 EM: Round [602] log likelihood: -5940.927999 EM: Round [603] log likelihood: -5940.927255 EM: Round [604] log likelihood: -5940.926514 EM: Round [605] log likelihood: -5940.925774 EM: Round [606] log likelihood: -5940.925036 EM: Round [607] log likelihood: -5940.924300 EM: Round [608] log likelihood: -5940.923566 EM: Round [609] log likelihood: -5940.922834 EM: Round [610] log likelihood: -5940.922103 EM: Round [611] log likelihood: -5940.921375 EM: Round [612] log likelihood: -5940.920649 EM: Round [613] log likelihood: -5940.919924 EM: Round [614] log likelihood: -5940.919201 EM: Round [615] log likelihood: -5940.918480 EM: Round [616] log likelihood: -5940.917761 EM: Round [617] log likelihood: -5940.917044 EM: Round [618] log likelihood: -5940.916328 EM: Round [619] log likelihood: -5940.915615 EM: Round [620] log likelihood: -5940.914903 EM: Round [621] log likelihood: -5940.914193 EM: Round [622] log likelihood: -5940.913485 EM: Round [623] log likelihood: -5940.912779 EM: Round [624] log likelihood: -5940.912074 EM: Round [625] log likelihood: -5940.911371 EM: Round [626] log likelihood: -5940.910670 EM: Round [627] log likelihood: -5940.909971 EM: Round [628] log likelihood: -5940.909274 EM: Round [629] log likelihood: -5940.908578 EM: Round [630] log likelihood: -5940.907884 EM: Round [631] log likelihood: -5940.907192 EM: Round [632] log likelihood: -5940.906502 EM: Round [633] log likelihood: -5940.905813 EM: Round [634] log likelihood: -5940.905127 EM: Round [635] log likelihood: -5940.904442 EM: Round [636] log likelihood: -5940.903758 EM: Round [637] log likelihood: -5940.903077 EM: Round [638] log likelihood: -5940.902397 EM: Round [639] log likelihood: -5940.901718 EM: Round [640] log likelihood: -5940.901042 EM: Round [641] log likelihood: -5940.900367 EM: Round [642] log likelihood: -5940.899694 EM: Round [643] log likelihood: -5940.899023 EM: Round [644] log likelihood: -5940.898353 EM: Round [645] log likelihood: -5940.897685 EM: Round [646] log likelihood: -5940.897019 EM: Round [647] log likelihood: -5940.896354 EM: Round [648] log likelihood: -5940.895691 EM: Round [649] log likelihood: -5940.895029 EM: Round [650] log likelihood: -5940.894370 EM: Round [651] log likelihood: -5940.893712 EM: Round [652] log likelihood: -5940.893055 EM: Round [653] log likelihood: -5940.892401 EM: Round [654] log likelihood: -5940.891747 EM: Round [655] log likelihood: -5940.891096 EM: Round [656] log likelihood: -5940.890446 EM: Round [657] log likelihood: -5940.889798 EM: Round [658] log likelihood: -5940.889151 EM: Round [659] log likelihood: -5940.888506 EM: Round [660] log likelihood: -5940.887863 EM: Round [661] log likelihood: -5940.887221 EM: Round [662] log likelihood: -5940.886581 EM: Round [663] log likelihood: -5940.885942 EM: Round [664] log likelihood: -5940.885305 EM: Round [665] log likelihood: -5940.884670 EM: Round [666] log likelihood: -5940.884036 EM: Round [667] log likelihood: -5940.883403 EM: Round [668] log likelihood: -5940.882773 EM: Round [669] log likelihood: -5940.882143 EM: Round [670] log likelihood: -5940.881516 EM: Round [671] log likelihood: -5940.880890 EM: Round [672] log likelihood: -5940.880265 EM: Round [673] log likelihood: -5940.879642 EM: Round [674] log likelihood: -5940.879021 EM: Round [675] log likelihood: -5940.878401 EM: Round [676] log likelihood: -5940.877782 EM: Round [677] log likelihood: -5940.877165 EM: Round [678] log likelihood: -5940.876550 EM: Round [679] log likelihood: -5940.875936 EM: Round [680] log likelihood: -5940.875324 EM: Round [681] log likelihood: -5940.874713 EM: Round [682] log likelihood: -5940.874104 EM: Round [683] log likelihood: -5940.873496 EM: Round [684] log likelihood: -5940.872889 EM: Round [685] log likelihood: -5940.872284 EM: Round [686] log likelihood: -5940.871681 EM: Round [687] log likelihood: -5940.871079 EM: Round [688] log likelihood: -5940.870479 EM: Round [689] log likelihood: -5940.869880 EM: Round [690] log likelihood: -5940.869282 EM: Round [691] log likelihood: -5940.868686 EM: Round [692] log likelihood: -5940.868091 EM: Round [693] log likelihood: -5940.867498 EM: Round [694] log likelihood: -5940.866907 EM: Round [695] log likelihood: -5940.866316 EM: Round [696] log likelihood: -5940.865727 EM: Round [697] log likelihood: -5940.865140 EM: Round [698] log likelihood: -5940.864554 EM: Round [699] log likelihood: -5940.863970 EM: Round [700] log likelihood: -5940.863386 EM: Round [701] log likelihood: -5940.862805 EM: Round [702] log likelihood: -5940.862224 EM: Round [703] log likelihood: -5940.861645 EM: Round [704] log likelihood: -5940.861068 EM: Round [705] log likelihood: -5940.860492 EM: Round [706] log likelihood: -5940.859917 EM: Round [707] log likelihood: -5940.859344 EM: Round [708] log likelihood: -5940.858772 EM: Round [709] log likelihood: -5940.858201 EM: Round [710] log likelihood: -5940.857632 EM: Round [711] log likelihood: -5940.857064 EM: Round [712] log likelihood: -5940.856498 EM: Round [713] log likelihood: -5940.855933 EM: Round [714] log likelihood: -5940.855369 EM: Round [715] log likelihood: -5940.854807 EM: Round [716] log likelihood: -5940.854246 EM: Round [717] log likelihood: -5940.853686 EM: Round [718] log likelihood: -5940.853128 EM: Round [719] log likelihood: -5940.852571 EM: Round [720] log likelihood: -5940.852015 EM: Round [721] log likelihood: -5940.851461 EM: Round [722] log likelihood: -5940.850908 EM: Round [723] log likelihood: -5940.850356 EM: Round [724] log likelihood: -5940.849806 EM: Round [725] log likelihood: -5940.849257 EM: Round [726] log likelihood: -5940.848709 EM: Round [727] log likelihood: -5940.848163 EM: Round [728] log likelihood: -5940.847618 EM: Round [729] log likelihood: -5940.847074 EM: Round [730] log likelihood: -5940.846532 EM: Round [731] log likelihood: -5940.845990 EM: Round [732] log likelihood: -5940.845450 EM: Round [733] log likelihood: -5940.844912 EM: Round [734] log likelihood: -5940.844375 EM: Round [735] log likelihood: -5940.843839 EM: Round [736] log likelihood: -5940.843304 EM: Round [737] log likelihood: -5940.842770 EM: Round [738] log likelihood: -5940.842238 EM: Round [739] log likelihood: -5940.841707 EM: Round [740] log likelihood: -5940.841177 EM: Round [741] log likelihood: -5940.840649 EM: Round [742] log likelihood: -5940.840122 EM: Round [743] log likelihood: -5940.839596 EM: Round [744] log likelihood: -5940.839071 EM: Round [745] log likelihood: -5940.838548 EM: Round [746] log likelihood: -5940.838025 EM: Round [747] log likelihood: -5940.837504 EM: Round [748] log likelihood: -5940.836985 EM: Round [749] log likelihood: -5940.836466 EM: Round [750] log likelihood: -5940.835949 EM: Round [751] log likelihood: -5940.835433 EM: Round [752] log likelihood: -5940.834918 EM: Round [753] log likelihood: -5940.834404 EM: Round [754] log likelihood: -5940.833892 EM: Round [755] log likelihood: -5940.833381 EM: Round [756] log likelihood: -5940.832871 EM: Round [757] log likelihood: -5940.832362 EM: Round [758] log likelihood: -5940.831854 EM: Round [759] log likelihood: -5940.831348 EM: Round [760] log likelihood: -5940.830842 EM: Round [761] log likelihood: -5940.830338 EM: Round [762] log likelihood: -5940.829836 EM: Round [763] log likelihood: -5940.829334 EM: Round [764] log likelihood: -5940.828833 EM: Round [765] log likelihood: -5940.828334 EM: Round [766] log likelihood: -5940.827836 EM: Round [767] log likelihood: -5940.827339 EM: Round [768] log likelihood: -5940.826843 EM: Round [769] log likelihood: -5940.826348 EM: Round [770] log likelihood: -5940.825855 EM: Round [771] log likelihood: -5940.825362 EM: Round [772] log likelihood: -5940.824871 EM: Round [773] log likelihood: -5940.824381 EM: Round [774] log likelihood: -5940.823892 EM: Round [775] log likelihood: -5940.823404 EM: Round [776] log likelihood: -5940.822918 EM: Round [777] log likelihood: -5940.822432 EM: Round [778] log likelihood: -5940.821948 EM: Round [779] log likelihood: -5940.821465 EM: Round [780] log likelihood: -5940.820982 EM: Round [781] log likelihood: -5940.820501 EM: Round [782] log likelihood: -5940.820022 EM: Round [783] log likelihood: -5940.819543 EM: Round [784] log likelihood: -5940.819065 EM: Round [785] log likelihood: -5940.818588 EM: Round [786] log likelihood: -5940.818113 EM: Round [787] log likelihood: -5940.817639 EM: Round [788] log likelihood: -5940.817165 EM: Round [789] log likelihood: -5940.816693 EM: Round [790] log likelihood: -5940.816222 EM: Round [791] log likelihood: -5940.815752 EM: Round [792] log likelihood: -5940.815283 EM: Round [793] log likelihood: -5940.814816 EM: Round [794] log likelihood: -5940.814349 EM: Round [795] log likelihood: -5940.813883 EM: Round [796] log likelihood: -5940.813419 EM: Round [797] log likelihood: -5940.812955 EM: Round [798] log likelihood: -5940.812493 EM: Round [799] log likelihood: -5940.812031 EM: Round [800] log likelihood: -5940.811571 EM: Round [801] log likelihood: -5940.811112 EM: Round [802] log likelihood: -5940.810654 EM: Round [803] log likelihood: -5940.810196 EM: Round [804] log likelihood: -5940.809740 EM: Round [805] log likelihood: -5940.809285 EM: Round [806] log likelihood: -5940.808831 EM: Round [807] log likelihood: -5940.808378 EM: Round [808] log likelihood: -5940.807927 EM: Round [809] log likelihood: -5940.807476 EM: Round [810] log likelihood: -5940.807026 EM: Round [811] log likelihood: -5940.806577 EM: Round [812] log likelihood: -5940.806129 EM: Round [813] log likelihood: -5940.805683 EM: Round [814] log likelihood: -5940.805237 EM: Round [815] log likelihood: -5940.804792 EM: Round [816] log likelihood: -5940.804349 EM: Round [817] log likelihood: -5940.803906 EM: Round [818] log likelihood: -5940.803464 EM: Round [819] log likelihood: -5940.803024 EM: Round [820] log likelihood: -5940.802584 EM: Round [821] log likelihood: -5940.802145 EM: Round [822] log likelihood: -5940.801708 EM: Round [823] log likelihood: -5940.801271 EM: Round [824] log likelihood: -5940.800835 EM: Round [825] log likelihood: -5940.800401 EM: Round [826] log likelihood: -5940.799967 EM: Round [827] log likelihood: -5940.799534 EM: Round [828] log likelihood: -5940.799103 EM: Round [829] log likelihood: -5940.798672 EM: Round [830] log likelihood: -5940.798242 EM: Round [831] log likelihood: -5940.797814 EM: Round [832] log likelihood: -5940.797386 EM: Round [833] log likelihood: -5940.796959 EM: Round [834] log likelihood: -5940.796533 EM: Round [835] log likelihood: -5940.796108 EM: Round [836] log likelihood: -5940.795685 EM: Round [837] log likelihood: -5940.795262 EM: Round [838] log likelihood: -5940.794840 EM: Round [839] log likelihood: -5940.794419 EM: Round [840] log likelihood: -5940.793999 EM: Round [841] log likelihood: -5940.793579 EM: Round [842] log likelihood: -5940.793161 EM: Round [843] log likelihood: -5940.792744 EM: Round [844] log likelihood: -5940.792328 EM: Round [845] log likelihood: -5940.791912 EM: Round [846] log likelihood: -5940.791498 EM: Round [847] log likelihood: -5940.791085 EM: Round [848] log likelihood: -5940.790672 EM: Round [849] log likelihood: -5940.790260 EM: Round [850] log likelihood: -5940.789850 EM: Round [851] log likelihood: -5940.789440 EM: Round [852] log likelihood: -5940.789031 EM: Round [853] log likelihood: -5940.788623 EM: Round [854] log likelihood: -5940.788216 EM: Round [855] log likelihood: -5940.787810 EM: Round [856] log likelihood: -5940.787405 EM: Round [857] log likelihood: -5940.787001 EM: Round [858] log likelihood: -5940.786598 EM: Round [859] log likelihood: -5940.786195 EM: Round [860] log likelihood: -5940.785794 EM: Round [861] log likelihood: -5940.785393 EM: Round [862] log likelihood: -5940.784993 EM: Round [863] log likelihood: -5940.784594 EM: Round [864] log likelihood: -5940.784196 EM: Round [865] log likelihood: -5940.783799 EM: Round [866] log likelihood: -5940.783403 EM: Round [867] log likelihood: -5940.783008 EM: Round [868] log likelihood: -5940.782614 EM: Round [869] log likelihood: -5940.782220 EM: Round [870] log likelihood: -5940.781828 EM: Round [871] log likelihood: -5940.781436 EM: Round [872] log likelihood: -5940.781045 EM: Round [873] log likelihood: -5940.780655 EM: Round [874] log likelihood: -5940.780266 EM: Round [875] log likelihood: -5940.779878 EM: Round [876] log likelihood: -5940.779490 EM: Round [877] log likelihood: -5940.779104 EM: Round [878] log likelihood: -5940.778718 EM: Round [879] log likelihood: -5940.778333 EM: Round [880] log likelihood: -5940.777949 EM: Round [881] log likelihood: -5940.777566 EM: Round [882] log likelihood: -5940.777184 EM: Round [883] log likelihood: -5940.776803 EM: Round [884] log likelihood: -5940.776422 EM: Round [885] log likelihood: -5940.776042 EM: Round [886] log likelihood: -5940.775664 EM: Round [887] log likelihood: -5940.775286 EM: Round [888] log likelihood: -5940.774908 EM: Round [889] log likelihood: -5940.774532 EM: Round [890] log likelihood: -5940.774157 EM: Round [891] log likelihood: -5940.773782 EM: Round [892] log likelihood: -5940.773408 EM: Round [893] log likelihood: -5940.773035 EM: Round [894] log likelihood: -5940.772663 EM: Round [895] log likelihood: -5940.772292 EM: Round [896] log likelihood: -5940.771921 EM: Round [897] log likelihood: -5940.771552 EM: Round [898] log likelihood: -5940.771183 EM: Round [899] log likelihood: -5940.770815 EM: Round [900] log likelihood: -5940.770447 EM: Round [901] log likelihood: -5940.770081 EM: Round [902] log likelihood: -5940.769715 EM: Round [903] log likelihood: -5940.769350 EM: Round [904] log likelihood: -5940.768986 EM: Round [905] log likelihood: -5940.768623 EM: Round [906] log likelihood: -5940.768261 EM: Round [907] log likelihood: -5940.767899 EM: Round [908] log likelihood: -5940.767538 EM: Round [909] log likelihood: -5940.767178 EM: Round [910] log likelihood: -5940.766819 EM: Round [911] log likelihood: -5940.766461 EM: Round [912] log likelihood: -5940.766103 EM: Round [913] log likelihood: -5940.765746 EM: Round [914] log likelihood: -5940.765390 EM: Round [915] log likelihood: -5940.765035 EM: Round [916] log likelihood: -5940.764680 EM: Round [917] log likelihood: -5940.764327 EM: Round [918] log likelihood: -5940.763974 EM: Round [919] log likelihood: -5940.763622 EM: Round [920] log likelihood: -5940.763270 EM: Round [921] log likelihood: -5940.762920 EM: Round [922] log likelihood: -5940.762570 EM: Round [923] log likelihood: -5940.762221 EM: Round [924] log likelihood: -5940.761872 EM: Round [925] log likelihood: -5940.761525 EM: Round [926] log likelihood: -5940.761178 EM: Round [927] log likelihood: -5940.760832 EM: Round [928] log likelihood: -5940.760487 EM: Round [929] log likelihood: -5940.760142 EM: Round [930] log likelihood: -5940.759798 EM: Round [931] log likelihood: -5940.759455 EM: Round [932] log likelihood: -5940.759113 EM: Round [933] log likelihood: -5940.758772 EM: Round [934] log likelihood: -5940.758431 EM: Round [935] log likelihood: -5940.758091 EM: Round [936] log likelihood: -5940.757752 EM: Round [937] log likelihood: -5940.757413 EM: Round [938] log likelihood: -5940.757075 EM: Round [939] log likelihood: -5940.756738 EM: Round [940] log likelihood: -5940.756402 EM: Round [941] log likelihood: -5940.756066 EM: Round [942] log likelihood: -5940.755731 EM: Round [943] log likelihood: -5940.755397 EM: Round [944] log likelihood: -5940.755064 EM: Round [945] log likelihood: -5940.754731 EM: Round [946] log likelihood: -5940.754399 EM: Round [947] log likelihood: -5940.754068 EM: Round [948] log likelihood: -5940.753737 EM: Round [949] log likelihood: -5940.753408 EM: Round [950] log likelihood: -5940.753078 EM: Round [951] log likelihood: -5940.752750 EM: Round [952] log likelihood: -5940.752422 EM: Round [953] log likelihood: -5940.752096 EM: Round [954] log likelihood: -5940.751769 EM: Round [955] log likelihood: -5940.751444 EM: Round [956] log likelihood: -5940.751119 EM: Round [957] log likelihood: -5940.750795 EM: Round [958] log likelihood: -5940.750471 EM: Round [959] log likelihood: -5940.750149 EM: Round [960] log likelihood: -5940.749827 EM: Round [961] log likelihood: -5940.749505 EM: Round [962] log likelihood: -5940.749185 EM: Round [963] log likelihood: -5940.748865 EM: Round [964] log likelihood: -5940.748546 EM: Round [965] log likelihood: -5940.748227 EM: Round [966] log likelihood: -5940.747909 EM: Round [967] log likelihood: -5940.747592 EM: Round [968] log likelihood: -5940.747276 EM: Round [969] log likelihood: -5940.746960 EM: Round [970] log likelihood: -5940.746645 EM: Round [971] log likelihood: -5940.746330 EM: Round [972] log likelihood: -5940.746017 EM: Round [973] log likelihood: -5940.745703 EM: Round [974] log likelihood: -5940.745391 EM: Round [975] log likelihood: -5940.745079 EM: Round [976] log likelihood: -5940.744768 EM: Round [977] log likelihood: -5940.744458 EM: Round [978] log likelihood: -5940.744148 EM: Round [979] log likelihood: -5940.743839 EM: Round [980] log likelihood: -5940.743531 EM: Round [981] log likelihood: -5940.743223 EM: Round [982] log likelihood: -5940.742916 EM: Round [983] log likelihood: -5940.742610 EM: Round [984] log likelihood: -5940.742304 EM: Round [985] log likelihood: -5940.741999 EM: Round [986] log likelihood: -5940.741694 EM: Round [987] log likelihood: -5940.741391 EM: Round [988] log likelihood: -5940.741087 EM: Round [989] log likelihood: -5940.740785 EM: Round [990] log likelihood: -5940.740483 EM: Round [991] log likelihood: -5940.740182 EM: Round [992] log likelihood: -5940.739881 EM: Round [993] log likelihood: -5940.739582 EM: Round [994] log likelihood: -5940.739282 EM: Round [995] log likelihood: -5940.738984 EM: Round [996] log likelihood: -5940.738686 EM: Round [997] log likelihood: -5940.738388 EM: Round [998] log likelihood: -5940.738092 EM: Round [999] log likelihood: -5940.737796 EM: Round [1000] log likelihood: -5940.737500 EM: Round [1001] log likelihood: -5940.737206 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/EM_adj_counts.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM -total frags in /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz: 294313126 Execution Time = 5.24 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/add_FFPM.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa --gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/fi_workdir/microH.dat Execution Time = 0.02 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fa --gtf /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gtf > /tmp/nxf.6Rr8fozmq3/fi_workdir/microH.dat Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/microH.dat.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.6Rr8fozmq3/fi_workdir/microH.dat /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.6Rr8fozmq3/fi_workdir/microH.dat /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/append_microH_info.ok Running: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/cp_final.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/final.abridged.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.6Rr8fozmq3 --json_outfile /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --file_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.6Rr8fozmq3 --json_outfile /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --file_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/create_fi_igvjs.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --input_file_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --html_output /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.html Warning - not locating file: /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.gmap_trinity_GG.fusions.gff3.bed Execution Time = 0.04 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.json --input_file_prefix 1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1 --html_output /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.fusion_inspector_web.html Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/fusion_reports_html.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/fusion_annotator.ok Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect WARNING, no entry stored in dbm for [ENSG00000273897.1] WARNING, no entry stored in dbm for [ENSG00000273897.1] WARNING, no entry stored in dbm for [ENSG00000273897.1] WARNING, no entry stored in dbm for [ENSG00000273897.1] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000154874.15] WARNING, no entry stored in dbm for [ENSG00000154874.15] WARNING, no entry stored in dbm for [ENSG00000154874.15] WARNING, no entry stored in dbm for [ENSG00000226240.2] WARNING, no entry stored in dbm for [ENSG00000123201.14] WARNING, no entry stored in dbm for [ENSG00000210082.2] WARNING, no entry stored in dbm for [ENSG00000253784.1] WARNING, no entry stored in dbm for [ENSG00000250735.5] Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated --genome_lib_dir /tmp/nxf.6Rr8fozmq3/ctat_genome_lib_build_dir > /tmp/nxf.6Rr8fozmq3/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect Running: touch /tmp/nxf.6Rr8fozmq3/chckpts_dir/fusion_coding_region_effect.ok ls: cannot access 'IGV_inputs': No such file or directory