File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/d88c4057ca23bbba5506fedc00cbe7/.command.err
Size
94.1 KB
Attempt
-ctat genome lib [/tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.ytuUpZ3bhu/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary
-sample contains 292772921 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir  -J /tmp/nxf.ytuUpZ3bhu/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.ytuUpZ3bhu/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes

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-building interval tree based on /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes

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-building interval tree based on /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes

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[3790000], rate=43798.15/min -building interval tree based on /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes

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[2690000],7/min 
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[2700000], rate=30303.03/min 
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[3500000], rate=34168.56/min 
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[3640000], rate=34854.77/min 
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[3680000], rate=35075.46/min 
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[3700000], rate=35187.83/min 
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[3720000], rate=35305.28/min 
[3730000], rate=35366.62/min 
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[3750000], rate=35483.36/min 
[3760000], rate=35544.35/min 
[3770000], rate=35599.62/min 
[3780000], rate=35660.38/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
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 4577777.78 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.ytuUpZ3bhu/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -4738371.890252
EM: Round [1] log likelihood: -4737877.034152
EM: Round [2] log likelihood: -4737699.303038
EM: Round [3] log likelihood: -4737615.501176
EM: Round [4] log likelihood: -4737570.756840
EM: Round [5] log likelihood: -4737545.093642
EM: Round [6] log likelihood: -4737529.533362
EM: Round [7] log likelihood: -4737519.601788
EM: Round [8] log likelihood: -4737512.943998
EM: Round [9] log likelihood: -4737508.270874
EM: Round [10] log likelihood: -4737504.851100
EM: Round [11] log likelihood: -4737502.255131
EM: Round [12] log likelihood: -4737500.221848
EM: Round [13] log likelihood: -4737498.586968
EM: Round [14] log likelihood: -4737497.243522
EM: Round [15] log likelihood: -4737496.119481
EM: Round [16] log likelihood: -4737495.164782
EM: Round [17] log likelihood: -4737494.343610
EM: Round [18] log likelihood: -4737493.629675
EM: Round [19] log likelihood: -4737493.003237
EM: Round [20] log likelihood: -4737492.449182
EM: Round [21] log likelihood: -4737491.955735
EM: Round [22] log likelihood: -4737491.513579
EM: Round [23] log likelihood: -4737491.115246
EM: Round [24] log likelihood: -4737490.754671
EM: Round [25] log likelihood: -4737490.426875
EM: Round [26] log likelihood: -4737490.127732
EM: Round [27] log likelihood: -4737489.853788
EM: Round [28] log likelihood: -4737489.602128
EM: Round [29] log likelihood: -4737489.370274
EM: Round [30] log likelihood: -4737489.156103
EM: Round [31] log likelihood: -4737488.957787
EM: Round [32] log likelihood: -4737488.773741
EM: Round [33] log likelihood: -4737488.602581
EM: Round [34] log likelihood: -4737488.443099
EM: Round [35] log likelihood: -4737488.294228
EM: Round [36] log likelihood: -4737488.155028
EM: Round [37] log likelihood: -4737488.024665
EM: Round [38] log likelihood: -4737487.902394
EM: Round [39] log likelihood: -4737487.787553
EM: Round [40] log likelihood: -4737487.679546
EM: Round [41] log likelihood: -4737487.577839
EM: Round [42] log likelihood: -4737487.481952
EM: Round [43] log likelihood: -4737487.391448
EM: Round [44] log likelihood: -4737487.305934
EM: Round [45] log likelihood: -4737487.225052
EM: Round [46] log likelihood: -4737487.148478
EM: Round [47] log likelihood: -4737487.075914
EM: Round [48] log likelihood: -4737487.007091
EM: Round [49] log likelihood: -4737486.941759
EM: Round [50] log likelihood: -4737486.879694
EM: Round [51] log likelihood: -4737486.820684
EM: Round [52] log likelihood: -4737486.764540
EM: Round [53] log likelihood: -4737486.711084
EM: Round [54] log likelihood: -4737486.660153
EM: Round [55] log likelihood: -4737486.611596
EM: Round [56] log likelihood: -4737486.565275
EM: Round [57] log likelihood: -4737486.521060
EM: Round [58] log likelihood: -4737486.478830
EM: Round [59] log likelihood: -4737486.438476
EM: Round [60] log likelihood: -4737486.399892
EM: Round [61] log likelihood: -4737486.362983
EM: Round [62] log likelihood: -4737486.327658
EM: Round [63] log likelihood: -4737486.293834
EM: Round [64] log likelihood: -4737486.261433
EM: Round [65] log likelihood: -4737486.230380
EM: Round [66] log likelihood: -4737486.200607
EM: Round [67] log likelihood: -4737486.172049
EM: Round [68] log likelihood: -4737486.144647
EM: Round [69] log likelihood: -4737486.118343
EM: Round [70] log likelihood: -4737486.093083
EM: Round [71] log likelihood: -4737486.068819
EM: Round [72] log likelihood: -4737486.045502
EM: Round [73] log likelihood: -4737486.023088
EM: Round [74] log likelihood: -4737486.001534
EM: Round [75] log likelihood: -4737485.980802
EM: Round [76] log likelihood: -4737485.960854
EM: Round [77] log likelihood: -4737485.941655
EM: Round [78] log likelihood: -4737485.923170
EM: Round [79] log likelihood: -4737485.905369
EM: Round [80] log likelihood: -4737485.888221
EM: Round [81] log likelihood: -4737485.871698
EM: Round [82] log likelihood: -4737485.855773
EM: Round [83] log likelihood: -4737485.840421
EM: Round [84] log likelihood: -4737485.825617
EM: Round [85] log likelihood: -4737485.811338
EM: Round [86] log likelihood: -4737485.797563
EM: Round [87] log likelihood: -4737485.784270
EM: Round [88] log likelihood: -4737485.771440
EM: Round [89] log likelihood: -4737485.759054
EM: Round [90] log likelihood: -4737485.747093
EM: Round [91] log likelihood: -4737485.735542
EM: Round [92] log likelihood: -4737485.724383
EM: Round [93] log likelihood: -4737485.713602
EM: Round [94] log likelihood: -4737485.703183
EM: Round [95] log likelihood: -4737485.693112
EM: Round [96] log likelihood: -4737485.683376
EM: Round [97] log likelihood: -4737485.673961
EM: Round [98] log likelihood: -4737485.664857
EM: Round [99] log likelihood: -4737485.656050
EM: Round [100] log likelihood: -4737485.647530
EM: Round [101] log likelihood: -4737485.639285
EM: Round [102] log likelihood: -4737485.631307
EM: Round [103] log likelihood: -4737485.623584
EM: Round [104] log likelihood: -4737485.616107
EM: Round [105] log likelihood: -4737485.608868
EM: Round [106] log likelihood: -4737485.601858
EM: Round [107] log likelihood: -4737485.595068
EM: Round [108] log likelihood: -4737485.588491
EM: Round [109] log likelihood: -4737485.582119
EM: Round [110] log likelihood: -4737485.575944
EM: Round [111] log likelihood: -4737485.569960
EM: Round [112] log likelihood: -4737485.564160
EM: Round [113] log likelihood: -4737485.558538
EM: Round [114] log likelihood: -4737485.553087
EM: Round [115] log likelihood: -4737485.547802
EM: Round [116] log likelihood: -4737485.542676
EM: Round [117] log likelihood: -4737485.537705
EM: Round [118] log likelihood: -4737485.532883
EM: Round [119] log likelihood: -4737485.528205
EM: Round [120] log likelihood: -4737485.523666
EM: Round [121] log likelihood: -4737485.519261
EM: Round [122] log likelihood: -4737485.514987
EM: Round [123] log likelihood: -4737485.510838
EM: Round [124] log likelihood: -4737485.506810
EM: Round [125] log likelihood: -4737485.502900
EM: Round [126] log likelihood: -4737485.499104
EM: Round [127] log likelihood: -4737485.495418
EM: Round [128] log likelihood: -4737485.491838
EM: Round [129] log likelihood: -4737485.488361
EM: Round [130] log likelihood: -4737485.484984
EM: Round [131] log likelihood: -4737485.481703
EM: Round [132] log likelihood: -4737485.478516
EM: Round [133] log likelihood: -4737485.475418
EM: Round [134] log likelihood: -4737485.472409
EM: Round [135] log likelihood: -4737485.469484
EM: Round [136] log likelihood: -4737485.466641
EM: Round [137] log likelihood: -4737485.463878
EM: Round [138] log likelihood: -4737485.461192
EM: Round [139] log likelihood: -4737485.458581
EM: Round [140] log likelihood: -4737485.456042
EM: Round [141] log likelihood: -4737485.453573
EM: Round [142] log likelihood: -4737485.451172
EM: Round [143] log likelihood: -4737485.448837
EM: Round [144] log likelihood: -4737485.446566
EM: Round [145] log likelihood: -4737485.444357
EM: Round [146] log likelihood: -4737485.442208
EM: Round [147] log likelihood: -4737485.440117
EM: Round [148] log likelihood: -4737485.438083
EM: Round [149] log likelihood: -4737485.436104
EM: Round [150] log likelihood: -4737485.434178
EM: Round [151] log likelihood: -4737485.432303
EM: Round [152] log likelihood: -4737485.430479
EM: Round [153] log likelihood: -4737485.428704
EM: Round [154] log likelihood: -4737485.426975
EM: Round [155] log likelihood: -4737485.425293
EM: Round [156] log likelihood: -4737485.423655
EM: Round [157] log likelihood: -4737485.422060
EM: Round [158] log likelihood: -4737485.420508
EM: Round [159] log likelihood: -4737485.418996
EM: Round [160] log likelihood: -4737485.417523
EM: Round [161] log likelihood: -4737485.416090
EM: Round [162] log likelihood: -4737485.414693
EM: Round [163] log likelihood: -4737485.413333
EM: Round [164] log likelihood: -4737485.412008
EM: Round [165] log likelihood: -4737485.410717
EM: Round [166] log likelihood: -4737485.409460
EM: Round [167] log likelihood: -4737485.408235
EM: Round [168] log likelihood: -4737485.407042
EM: Round [169] log likelihood: -4737485.405879
EM: Round [170] log likelihood: -4737485.404746
EM: Round [171] log likelihood: -4737485.403641
EM: Round [172] log likelihood: -4737485.402565
EM: Round [173] log likelihood: -4737485.401517
EM: Round [174] log likelihood: -4737485.400494
EM: Round [175] log likelihood: -4737485.399498
EM: Round [176] log likelihood: -4737485.398527
EM: Round [177] log likelihood: -4737485.397580
EM: Round [178] log likelihood: -4737485.396657
EM: Round [179] log likelihood: -4737485.395757
EM: Round [180] log likelihood: -4737485.394880
EM: Round [181] log likelihood: -4737485.394025
EM: Round [182] log likelihood: -4737485.393191
EM: Round [183] log likelihood: -4737485.392377
EM: Round [184] log likelihood: -4737485.391584
EM: Round [185] log likelihood: -4737485.390811
EM: Round [186] log likelihood: -4737485.390056
EM: Round [187] log likelihood: -4737485.389321
EM: Round [188] log likelihood: -4737485.388603
EM: Round [189] log likelihood: -4737485.387903
EM: Round [190] log likelihood: -4737485.387220
EM: Round [191] log likelihood: -4737485.386554
EM: Round [192] log likelihood: -4737485.385905
EM: Round [193] log likelihood: -4737485.385271
EM: Round [194] log likelihood: -4737485.384652
EM: Round [195] log likelihood: -4737485.384049
EM: Round [196] log likelihood: -4737485.383460
EM: Round [197] log likelihood: -4737485.382886
EM: Round [198] log likelihood: -4737485.382325
EM: Round [199] log likelihood: -4737485.381778
EM: Round [200] log likelihood: -4737485.381245
EM: Round [201] log likelihood: -4737485.380724
EM: Round [202] log likelihood: -4737485.380215
EM: Round [203] log likelihood: -4737485.379719
EM: Round [204] log likelihood: -4737485.379235
EM: Round [205] log likelihood: -4737485.378762
EM: Round [206] log likelihood: -4737485.378301
EM: Round [207] log likelihood: -4737485.377850
EM: Round [208] log likelihood: -4737485.377410
EM: Round [209] log likelihood: -4737485.376981
EM: Round [210] log likelihood: -4737485.376562
EM: Round [211] log likelihood: -4737485.376153
EM: Round [212] log likelihood: -4737485.375754
EM: Round [213] log likelihood: -4737485.375364
EM: Round [214] log likelihood: -4737485.374983
EM: Round [215] log likelihood: -4737485.374611
EM: Round [216] log likelihood: -4737485.374248
EM: Round [217] log likelihood: -4737485.373893
EM: Round [218] log likelihood: -4737485.373547
EM: Round [219] log likelihood: -4737485.373209
EM: Round [220] log likelihood: -4737485.372879
EM: Round [221] log likelihood: -4737485.372556
EM: Round [222] log likelihood: -4737485.372241
EM: Round [223] log likelihood: -4737485.371934
EM: Round [224] log likelihood: -4737485.371633
EM: Round [225] log likelihood: -4737485.371340
EM: Round [226] log likelihood: -4737485.371053
EM: Round [227] log likelihood: -4737485.370773
EM: Round [228] log likelihood: -4737485.370500
EM: Round [229] log likelihood: -4737485.370232
EM: Round [230] log likelihood: -4737485.369971
EM: Round [231] log likelihood: -4737485.369716
EM: Round [232] log likelihood: -4737485.369467
EM: Round [233] log likelihood: -4737485.369224
EM: Round [234] log likelihood: -4737485.368986
EM: Round [235] log likelihood: -4737485.368754
EM: Round [236] log likelihood: -4737485.368527
EM: Round [237] log likelihood: -4737485.368305
EM: Round [238] log likelihood: -4737485.368088
EM: Round [239] log likelihood: -4737485.367876
EM: Round [240] log likelihood: -4737485.367669
EM: Round [241] log likelihood: -4737485.367467
EM: Round [242] log likelihood: -4737485.367269
EM: Round [243] log likelihood: -4737485.367076
EM: Round [244] log likelihood: -4737485.366887
EM: Round [245] log likelihood: -4737485.366703
EM: Round [246] log likelihood: -4737485.366522
EM: Round [247] log likelihood: -4737485.366346
EM: Round [248] log likelihood: -4737485.366174
EM: Round [249] log likelihood: -4737485.366006
EM: Round [250] log likelihood: -4737485.365841
EM: Round [251] log likelihood: -4737485.365680
EM: Round [252] log likelihood: -4737485.365523
EM: Round [253] log likelihood: -4737485.365369
EM: Round [254] log likelihood: -4737485.365219
EM: Round [255] log likelihood: -4737485.365072
EM: Round [256] log likelihood: -4737485.364928
EM: Round [257] log likelihood: -4737485.364788
EM: Round [258] log likelihood: -4737485.364651
EM: Round [259] log likelihood: -4737485.364517
EM: Round [260] log likelihood: -4737485.364385
EM: Round [261] log likelihood: -4737485.364257
EM: Round [262] log likelihood: -4737485.364132
EM: Round [263] log likelihood: -4737485.364009
EM: Round [264] log likelihood: -4737485.363889
EM: Round [265] log likelihood: -4737485.363772
EM: Round [266] log likelihood: -4737485.363657
EM: Round [267] log likelihood: -4737485.363545
EM: Round [268] log likelihood: -4737485.363436
EM: Round [269] log likelihood: -4737485.363328
EM: Round [270] log likelihood: -4737485.363224
EM: Round [271] log likelihood: -4737485.363121
EM: Round [272] log likelihood: -4737485.363021
EM: Round [273] log likelihood: -4737485.362923
EM: Stopping iterations at round 273 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -4735517.685220
EM: Round [1] log likelihood: -4735121.534906
EM: Round [2] log likelihood: -4734982.929668
EM: Round [3] log likelihood: -4734918.085964
EM: Round [4] log likelihood: -4734883.696958
EM: Round [5] log likelihood: -4734864.156626
EM: Round [6] log likelihood: -4734852.451528
EM: Round [7] log likelihood: -4734845.090467
EM: Round [8] log likelihood: -4734840.240285
EM: Round [9] log likelihood: -4734836.900322
EM: Round [10] log likelihood: -4734834.504853
EM: Round [11] log likelihood: -4734832.723117
EM: Round [12] log likelihood: -4734831.355283
EM: Round [13] log likelihood: -4734830.276583
EM: Round [14] log likelihood: -4734829.406494
EM: Round [15] log likelihood: -4734828.691310
EM: Round [16] log likelihood: -4734828.094070
EM: Round [17] log likelihood: -4734827.588589
EM: Round [18] log likelihood: -4734827.155840
EM: Round [19] log likelihood: -4734826.781675
EM: Round [20] log likelihood: -4734826.455368
EM: Round [21] log likelihood: -4734826.168646
EM: Round [22] log likelihood: -4734825.915028
EM: Round [23] log likelihood: -4734825.689368
EM: Round [24] log likelihood: -4734825.487528
EM: Round [25] log likelihood: -4734825.306146
EM: Round [26] log likelihood: -4734825.142458
EM: Round [27] log likelihood: -4734824.994173
EM: Round [28] log likelihood: -4734824.859375
EM: Round [29] log likelihood: -4734824.736449
EM: Round [30] log likelihood: -4734824.624023
EM: Round [31] log likelihood: -4734824.520923
EM: Round [32] log likelihood: -4734824.426142
EM: Round [33] log likelihood: -4734824.338807
EM: Round [34] log likelihood: -4734824.258159
EM: Round [35] log likelihood: -4734824.183537
EM: Round [36] log likelihood: -4734824.114358
EM: Round [37] log likelihood: -4734824.050111
EM: Round [38] log likelihood: -4734823.990343
EM: Round [39] log likelihood: -4734823.934654
EM: Round [40] log likelihood: -4734823.882685
EM: Round [41] log likelihood: -4734823.834119
EM: Round [42] log likelihood: -4734823.788669
EM: Round [43] log likelihood: -4734823.746081
EM: Round [44] log likelihood: -4734823.706124
EM: Round [45] log likelihood: -4734823.668590
EM: Round [46] log likelihood: -4734823.633293
EM: Round [47] log likelihood: -4734823.600063
EM: Round [48] log likelihood: -4734823.568745
EM: Round [49] log likelihood: -4734823.539200
EM: Round [50] log likelihood: -4734823.511302
EM: Round [51] log likelihood: -4734823.484933
EM: Round [52] log likelihood: -4734823.459988
EM: Round [53] log likelihood: -4734823.436370
EM: Round [54] log likelihood: -4734823.413990
EM: Round [55] log likelihood: -4734823.392766
EM: Round [56] log likelihood: -4734823.372624
EM: Round [57] log likelihood: -4734823.353495
EM: Round [58] log likelihood: -4734823.335314
EM: Round [59] log likelihood: -4734823.318024
EM: Round [60] log likelihood: -4734823.301570
EM: Round [61] log likelihood: -4734823.285903
EM: Round [62] log likelihood: -4734823.270974
EM: Round [63] log likelihood: -4734823.256742
EM: Round [64] log likelihood: -4734823.243167
EM: Round [65] log likelihood: -4734823.230210
EM: Round [66] log likelihood: -4734823.217838
EM: Round [67] log likelihood: -4734823.206019
EM: Round [68] log likelihood: -4734823.194721
EM: Round [69] log likelihood: -4734823.183918
EM: Round [70] log likelihood: -4734823.173583
EM: Round [71] log likelihood: -4734823.163691
EM: Round [72] log likelihood: -4734823.154219
EM: Round [73] log likelihood: -4734823.145146
EM: Round [74] log likelihood: -4734823.136452
EM: Round [75] log likelihood: -4734823.128117
EM: Round [76] log likelihood: -4734823.120124
EM: Round [77] log likelihood: -4734823.112456
EM: Round [78] log likelihood: -4734823.105097
EM: Round [79] log likelihood: -4734823.098032
EM: Round [80] log likelihood: -4734823.091248
EM: Round [81] log likelihood: -4734823.084731
EM: Round [82] log likelihood: -4734823.078469
EM: Round [83] log likelihood: -4734823.072449
EM: Round [84] log likelihood: -4734823.066662
EM: Round [85] log likelihood: -4734823.061096
EM: Round [86] log likelihood: -4734823.055741
EM: Round [87] log likelihood: -4734823.050587
EM: Round [88] log likelihood: -4734823.045627
EM: Round [89] log likelihood: -4734823.040852
EM: Round [90] log likelihood: -4734823.036253
EM: Round [91] log likelihood: -4734823.031822
EM: Round [92] log likelihood: -4734823.027554
EM: Round [93] log likelihood: -4734823.023440
EM: Round [94] log likelihood: -4734823.019475
EM: Round [95] log likelihood: -4734823.015651
EM: Round [96] log likelihood: -4734823.011964
EM: Round [97] log likelihood: -4734823.008407
EM: Round [98] log likelihood: -4734823.004976
EM: Round [99] log likelihood: -4734823.001664
EM: Round [100] log likelihood: -4734822.998468
EM: Round [101] log likelihood: -4734822.995383
EM: Round [102] log likelihood: -4734822.992403
EM: Round [103] log likelihood: -4734822.989526
EM: Round [104] log likelihood: -4734822.986747
EM: Round [105] log likelihood: -4734822.984062
EM: Round [106] log likelihood: -4734822.981467
EM: Round [107] log likelihood: -4734822.978960
EM: Round [108] log likelihood: -4734822.976536
EM: Round [109] log likelihood: -4734822.974193
EM: Round [110] log likelihood: -4734822.971927
EM: Round [111] log likelihood: -4734822.969736
EM: Round [112] log likelihood: -4734822.967616
EM: Round [113] log likelihood: -4734822.965566
EM: Round [114] log likelihood: -4734822.963582
EM: Round [115] log likelihood: -4734822.961662
EM: Round [116] log likelihood: -4734822.959804
EM: Round [117] log likelihood: -4734822.958005
EM: Round [118] log likelihood: -4734822.956264
EM: Round [119] log likelihood: -4734822.954578
EM: Round [120] log likelihood: -4734822.952945
EM: Round [121] log likelihood: -4734822.951363
EM: Round [122] log likelihood: -4734822.949831
EM: Round [123] log likelihood: -4734822.948347
EM: Round [124] log likelihood: -4734822.946908
EM: Round [125] log likelihood: -4734822.945515
EM: Round [126] log likelihood: -4734822.944164
EM: Round [127] log likelihood: -4734822.942855
EM: Round [128] log likelihood: -4734822.941585
EM: Round [129] log likelihood: -4734822.940354
EM: Round [130] log likelihood: -4734822.939161
EM: Round [131] log likelihood: -4734822.938004
EM: Round [132] log likelihood: -4734822.936881
EM: Round [133] log likelihood: -4734822.935792
EM: Round [134] log likelihood: -4734822.934736
EM: Round [135] log likelihood: -4734822.933711
EM: Round [136] log likelihood: -4734822.932717
EM: Round [137] log likelihood: -4734822.931751
EM: Round [138] log likelihood: -4734822.930815
EM: Round [139] log likelihood: -4734822.929905
EM: Round [140] log likelihood: -4734822.929023
EM: Round [141] log likelihood: -4734822.928166
EM: Round [142] log likelihood: -4734822.927334
EM: Round [143] log likelihood: -4734822.926526
EM: Round [144] log likelihood: -4734822.925741
EM: Round [145] log likelihood: -4734822.924979
EM: Round [146] log likelihood: -4734822.924239
EM: Round [147] log likelihood: -4734822.923519
EM: Round [148] log likelihood: -4734822.922821
EM: Round [149] log likelihood: -4734822.922142
EM: Round [150] log likelihood: -4734822.921482
EM: Round [151] log likelihood: -4734822.920841
EM: Round [152] log likelihood: -4734822.920218
EM: Round [153] log likelihood: -4734822.919612
EM: Round [154] log likelihood: -4734822.919024
EM: Round [155] log likelihood: -4734822.918451
EM: Round [156] log likelihood: -4734822.917895
EM: Round [157] log likelihood: -4734822.917354
EM: Round [158] log likelihood: -4734822.916828
EM: Round [159] log likelihood: -4734822.916316
EM: Round [160] log likelihood: -4734822.915819
EM: Round [161] log likelihood: -4734822.915335
EM: Round [162] log likelihood: -4734822.914864
EM: Round [163] log likelihood: -4734822.914406
EM: Round [164] log likelihood: -4734822.913960
EM: Round [165] log likelihood: -4734822.913527
EM: Round [166] log likelihood: -4734822.913105
EM: Round [167] log likelihood: -4734822.912695
EM: Round [168] log likelihood: -4734822.912295
EM: Round [169] log likelihood: -4734822.911907
EM: Round [170] log likelihood: -4734822.911528
EM: Round [171] log likelihood: -4734822.911160
EM: Round [172] log likelihood: -4734822.910801
EM: Round [173] log likelihood: -4734822.910452
EM: Round [174] log likelihood: -4734822.910113
EM: Round [175] log likelihood: -4734822.909782
EM: Round [176] log likelihood: -4734822.909460
EM: Round [177] log likelihood: -4734822.909146
EM: Round [178] log likelihood: -4734822.908841
EM: Round [179] log likelihood: -4734822.908543
EM: Round [180] log likelihood: -4734822.908253
EM: Round [181] log likelihood: -4734822.907971
EM: Round [182] log likelihood: -4734822.907696
EM: Round [183] log likelihood: -4734822.907428
EM: Round [184] log likelihood: -4734822.907167
EM: Round [185] log likelihood: -4734822.906913
EM: Round [186] log likelihood: -4734822.906666
EM: Round [187] log likelihood: -4734822.906424
EM: Round [188] log likelihood: -4734822.906189
EM: Round [189] log likelihood: -4734822.905960
EM: Round [190] log likelihood: -4734822.905737
EM: Round [191] log likelihood: -4734822.905519
EM: Round [192] log likelihood: -4734822.905307
EM: Round [193] log likelihood: -4734822.905100
EM: Round [194] log likelihood: -4734822.904898
EM: Round [195] log likelihood: -4734822.904702
EM: Round [196] log likelihood: -4734822.904510
EM: Round [197] log likelihood: -4734822.904323
EM: Round [198] log likelihood: -4734822.904141
EM: Round [199] log likelihood: -4734822.903964
EM: Round [200] log likelihood: -4734822.903790
EM: Round [201] log likelihood: -4734822.903622
EM: Round [202] log likelihood: -4734822.903457
EM: Round [203] log likelihood: -4734822.903296
EM: Round [204] log likelihood: -4734822.903140
EM: Round [205] log likelihood: -4734822.902987
EM: Round [206] log likelihood: -4734822.902838
EM: Round [207] log likelihood: -4734822.902692
EM: Round [208] log likelihood: -4734822.902551
EM: Round [209] log likelihood: -4734822.902412
EM: Round [210] log likelihood: -4734822.902277
EM: Round [211] log likelihood: -4734822.902146
EM: Round [212] log likelihood: -4734822.902017
EM: Round [213] log likelihood: -4734822.901892
EM: Round [214] log likelihood: -4734822.901769
EM: Round [215] log likelihood: -4734822.901650
EM: Round [216] log likelihood: -4734822.901534
EM: Round [217] log likelihood: -4734822.901420
EM: Round [218] log likelihood: -4734822.901309
EM: Round [219] log likelihood: -4734822.901201
EM: Round [220] log likelihood: -4734822.901095
EM: Round [221] log likelihood: -4734822.900992
EM: Round [222] log likelihood: -4734822.900891
EM: Round [223] log likelihood: -4734822.900793
EM: Stopping iterations at round 223 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 292772921 > /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir > /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir --annotate /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir
-done, see /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 395, filtered: 2870)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.ytuUpZ3bhu/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ytuUpZ3bhu/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000231426.7]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000279821.1]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000249752.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000250111.3]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000260827.1]
WARNING, no entry stored in dbm for [ENSG00000281103.2]
WARNING, no entry stored in dbm for [ENSG00000272235.1]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000274615.1]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000263345.1]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000242435.1]
WARNING, no entry stored in dbm for [ENSG00000067601.8]
WARNING, no entry stored in dbm for [ENSG00000275139.1]
WARNING, no entry stored in dbm for [ENSG00000234771.3]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000230795.3]
WARNING, no entry stored in dbm for [ENSG00000228078.1]
WARNING, no entry stored in dbm for [ENSG00000272645.3]
WARNING, no entry stored in dbm for [ENSG00000234712.1]
WARNING, no entry stored in dbm for [ENSG00000203825.4]
WARNING, no entry stored in dbm for [ENSG00000272150.5]
WARNING, no entry stored in dbm for [ENSG00000250111.3]
WARNING, no entry stored in dbm for [ENSG00000205212.5]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000284783.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000245904.4]
WARNING, no entry stored in dbm for [ENSG00000273314.1]
WARNING, no entry stored in dbm for [ENSG00000283662.1]
WARNING, no entry stored in dbm for [ENSG00000236540.7]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000267606.1]
WARNING, no entry stored in dbm for [ENSG00000237234.7]
WARNING, no entry stored in dbm for [ENSG00000225205.5]
WARNING, no entry stored in dbm for [ENSG00000285888.1]
WARNING, no entry stored in dbm for [ENSG00000287225.1]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000260128.6]
WARNING, no entry stored in dbm for [ENSG00000180438.15]
WARNING, no entry stored in dbm for [ENSG00000197308.9]
WARNING, no entry stored in dbm for [ENSG00000284977.2]
WARNING, no entry stored in dbm for [ENSG00000229348.1]
WARNING, no entry stored in dbm for [ENSG00000231312.7]
WARNING, no entry stored in dbm for [ENSG00000234577.1]
WARNING, no entry stored in dbm for [ENSG00000258667.2]
WARNING, no entry stored in dbm for [ENSG00000234106.3]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000251667.1]
WARNING, no entry stored in dbm for [ENSG00000246465.1]
WARNING, no entry stored in dbm for [ENSG00000261490.1]
WARNING, no entry stored in dbm for [ENSG00000261490.1]
WARNING, no entry stored in dbm for [ENSG00000256827.1]
WARNING, no entry stored in dbm for [ENSG00000203645.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000253541.1]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000237787.5]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000243609.1]
WARNING, no entry stored in dbm for [ENSG00000241913.1]
WARNING, no entry stored in dbm for [ENSG00000235354.1]
WARNING, no entry stored in dbm for [ENSG00000270449.1]
WARNING, no entry stored in dbm for [ENSG00000278909.1]
WARNING, no entry stored in dbm for [ENSG00000263558.2]
WARNING, no entry stored in dbm for [ENSG00000266192.3]
WARNING, no entry stored in dbm for [ENSG00000208892.1]
WARNING, no entry stored in dbm for [ENSG00000225189.1]
WARNING, no entry stored in dbm for [ENSG00000225466.1]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000273760.1]
WARNING, no entry stored in dbm for [ENSG00000256615.1]
WARNING, no entry stored in dbm for [ENSG00000279050.1]
WARNING, no entry stored in dbm for [ENSG00000204261.9]
WARNING, no entry stored in dbm for [ENSG00000215414.4]
WARNING, no entry stored in dbm for [ENSG00000253298.2]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000275131.3]
WARNING, no entry stored in dbm for [ENSG00000254539.1]
WARNING, no entry stored in dbm for [ENSG00000247774.7]
WARNING, no entry stored in dbm for [ENSG00000261612.1]
WARNING, no entry stored in dbm for [ENSG00000259884.1]
WARNING, no entry stored in dbm for [ENSG00000106133.18]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259813.1]
WARNING, no entry stored in dbm for [ENSG00000276206.1]
WARNING, no entry stored in dbm for [ENSG00000238222.3]
WARNING, no entry stored in dbm for [ENSG00000283544.1]
WARNING, no entry stored in dbm for [ENSG00000236854.2]
WARNING, no entry stored in dbm for [ENSG00000280402.1]
WARNING, no entry stored in dbm for [ENSG00000225282.1]
WARNING, no entry stored in dbm for [ENSG00000279196.1]
WARNING, no entry stored in dbm for [ENSG00000228063.2]
WARNING, no entry stored in dbm for [ENSG00000242529.1]
WARNING, no entry stored in dbm for [ENSG00000253983.3]
WARNING, no entry stored in dbm for [ENSG00000229088.1]
WARNING, no entry stored in dbm for [ENSG00000251432.7]
WARNING, no entry stored in dbm for [ENSG00000263146.2]
WARNING, no entry stored in dbm for [ENSG00000287356.1]
WARNING, no entry stored in dbm for [ENSG00000249500.1]
WARNING, no entry stored in dbm for [ENSG00000264247.2]
WARNING, no entry stored in dbm for [ENSG00000256690.1]
WARNING, no entry stored in dbm for [ENSG00000260776.6]
WARNING, no entry stored in dbm for [ENSG00000260941.1]
WARNING, no entry stored in dbm for [ENSG00000254266.6]
WARNING, no entry stored in dbm for [ENSG00000286675.1]
WARNING, no entry stored in dbm for [ENSG00000286675.1]
WARNING, no entry stored in dbm for [ENSG00000250412.1]
WARNING, no entry stored in dbm for [ENSG00000260109.1]
WARNING, no entry stored in dbm for [ENSG00000259746.1]
WARNING, no entry stored in dbm for [ENSG00000230651.8]
WARNING, no entry stored in dbm for [ENSG00000250133.2]
WARNING, no entry stored in dbm for [ENSG00000255856.2]
WARNING, no entry stored in dbm for [ENSG00000235655.3]
WARNING, no entry stored in dbm for [ENSG00000218502.3]
WARNING, no entry stored in dbm for [ENSG00000272645.3]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000257277.2]
WARNING, no entry stored in dbm for [ENSG00000198468.9]
WARNING, no entry stored in dbm for [ENSG00000179743.4]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000262831.1]
WARNING, no entry stored in dbm for [ENSG00000275871.1]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000268119.6]
WARNING, no entry stored in dbm for [ENSG00000253833.1]
WARNING, no entry stored in dbm for [ENSG00000231560.1]
WARNING, no entry stored in dbm for [ENSG00000286867.1]
WARNING, no entry stored in dbm for [ENSG00000280927.1]
WARNING, no entry stored in dbm for [ENSG00000255874.2]
WARNING, no entry stored in dbm for [ENSG00000237773.7]
WARNING, no entry stored in dbm for [ENSG00000271382.1]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000260896.6]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000264334.1]
WARNING, no entry stored in dbm for [ENSG00000268034.1]
WARNING, no entry stored in dbm for [ENSG00000243389.1]
WARNING, no entry stored in dbm for [ENSG00000234567.1]
WARNING, no entry stored in dbm for [ENSG00000255856.2]
WARNING, no entry stored in dbm for [ENSG00000223745.8]
WARNING, no entry stored in dbm for [ENSG00000244144.1]
WARNING, no entry stored in dbm for [ENSG00000224186.8]
WARNING, no entry stored in dbm for [ENSG00000271717.1]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000279407.1]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000233995.1]
WARNING, no entry stored in dbm for [ENSG00000250539.1]
WARNING, no entry stored in dbm for [ENSG00000213239.3]
WARNING, no entry stored in dbm for [ENSG00000287315.1]
WARNING, no entry stored in dbm for [ENSG00000231702.2]
WARNING, no entry stored in dbm for [ENSG00000242176.1]
WARNING, no entry stored in dbm for [ENSG00000217801.10]
WARNING, no entry stored in dbm for [ENSG00000271551.2]
WARNING, no entry stored in dbm for [ENSG00000258034.1]
WARNING, no entry stored in dbm for [ENSG00000258878.1]
WARNING, no entry stored in dbm for [ENSG00000247970.2]
WARNING, no entry stored in dbm for [ENSG00000230537.2]
WARNING, no entry stored in dbm for [ENSG00000286116.1]
WARNING, no entry stored in dbm for [ENSG00000262619.2]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000216781.2]
WARNING, no entry stored in dbm for [ENSG00000234227.1]
WARNING, no entry stored in dbm for [ENSG00000283098.2]
WARNING, no entry stored in dbm for [ENSG00000201807.1]
WARNING, no entry stored in dbm for [ENSG00000286787.1]
WARNING, no entry stored in dbm for [ENSG00000279616.1]
WARNING, no entry stored in dbm for [ENSG00000287918.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000280195.1]
WARNING, no entry stored in dbm for [ENSG00000263707.1]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000215861.6]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000205584.6]
WARNING, no entry stored in dbm for [ENSG00000188101.5]
WARNING, no entry stored in dbm for [ENSG00000287090.1]
WARNING, no entry stored in dbm for [ENSG00000235421.1]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000253806.1]
WARNING, no entry stored in dbm for [ENSG00000125631.7]
WARNING, no entry stored in dbm for [ENSG00000278275.2]
WARNING, no entry stored in dbm for [ENSG00000267920.1]
WARNING, no entry stored in dbm for [ENSG00000259970.1]
WARNING, no entry stored in dbm for [ENSG00000261613.2]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000270978.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000231359.3]
WARNING, no entry stored in dbm for [ENSG00000213942.3]
WARNING, no entry stored in dbm for [ENSG00000287462.1]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000268047.1]
WARNING, no entry stored in dbm for [ENSG00000235972.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000267788.1]
WARNING, no entry stored in dbm for [ENSG00000267105.1]
WARNING, no entry stored in dbm for [ENSG00000230359.5]
WARNING, no entry stored in dbm for [ENSG00000267383.7]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000216895.9]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000263343.1]
WARNING, no entry stored in dbm for [ENSG00000280063.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000262292.2]
WARNING, no entry stored in dbm for [ENSG00000244513.7]
WARNING, no entry stored in dbm for [ENSG00000267009.6]
WARNING, no entry stored in dbm for [ENSG00000264421.1]
WARNING, no entry stored in dbm for [ENSG00000204929.13]
WARNING, no entry stored in dbm for [ENSG00000224063.6]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000261490.1]
WARNING, no entry stored in dbm for [ENSG00000267623.3]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000228113.7]
WARNING, no entry stored in dbm for [ENSG00000284130.1]
WARNING, no entry stored in dbm for [ENSG00000284060.1]
WARNING, no entry stored in dbm for [ENSG00000266192.3]
WARNING, no entry stored in dbm for [ENSG00000245105.4]
WARNING, no entry stored in dbm for [ENSG00000233473.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.ytuUpZ3bhu/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)