Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5d6fc876c16ba284d60eee2cd75675/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/300dd46a95f6d7f8d02ee26558bc82/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/2f8b76f8eef9c6ab2c47588011c787/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/300dd46a95f6d7f8d02ee26558bc82/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 282185143
[W::hts_idx_load3] The index file is older than the data file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	282185143
Known Splicing Events:	277486496
Partial Novel Splicing Events:	1580144
Novel Splicing Events:	3036908
Filtered Splicing Events:	81595

Total splicing  Junctions:	559835
Known Splicing Junctions:	283507
Partial Novel Splicing Junctions:	175533
Novel Splicing Junctions:	100795

===================================================================
Create BED file ...
Create Interact file ...