Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/142626a8ed8cedf1c9e7a5ddbc22e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/25a7d19d5c3e1abf22eae41bf0171e/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/142626a8ed8cedf1c9e7a5ddbc22e6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/2cef7a0b4eac3ab60cd947f5124d85/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 109.7 bp
  Median Fragment Length: 104.0 bp
  pct_mito_est_counts: 0.002%
  pct_ribo_est_counts: 0.64%
  pct_hk_est_counts: 0.351%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.005%
  pct_ribo_tpm: 2.035%
  pct_hk_tpm: 0.592%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.01%