AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 296
Pass (FILTER=PASS): 73 (24.7%)
Fail (FILTER=FAIL): 223 (75.3%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 7
All 7 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 59
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 37
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 17
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 16
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 14
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 14
confidence_below_min(low<high): 9
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 6
total_reads_below_min(6.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 5
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 4
Breakdown by confidence:
high: 73 pass, 11 fail (total: 84)
low: 0 pass, 94 fail (total: 94)
medium: 0 pass, 118 fail (total: 118)
Arriba filter: 296 rows -> 73 PASS; wrote 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered.tsv and 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filter_summary.txt