Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/e0e00ca2aa1b22bd944842b0f41586/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/e0e00ca2aa1b22bd944842b0f41586/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/701daa4b37cf390e7c0ee29f2b9d41/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/c3d341b012f556247a482ec2b7332d/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
MTAP--CDKN2B-AS1
starfusion
CDV3--MT-RNR2
starfusion
B4GALT6--DSC3
starfusion
arriba
TMEM65--ANXA13
starfusion
arriba
TMEM123--PDGFD
starfusion
PDCD1LG2--DYNC2H1
starfusion
RPSAP52--HMGA2
starfusion
CLTC--VMP1
starfusion
AL033504.1--SASH1
starfusion
arriba
TBC1D13--AL442224.1
starfusion
arriba
BIRC3--PDGFD
starfusion
TMEM123--DYNC2H1
starfusion
COL1A1--SLC45A4
starfusion
SH3BP5--AC002074.1
starfusion
arriba
AC239859.5--AC013734.1
starfusion
SRGAP2C--FCGR1B
starfusion
TLK2P1--AC110079.1
starfusion
PTPRM--TTC39C
starfusion
TMEM123--PPP2R2C
starfusion
TPTE--BAGE2
starfusion
TMEFF2--TEX41
starfusion
arriba
EIF4H--COL1A2
starfusion
TLK2--AC018638.8
starfusion
MAP3K20--RAPGEF4
starfusion
arriba
TMEM123--BIRC2
starfusion
NUP214--AP000851.1
arriba
NUP214--AP000851.2
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
UGDH--UGDH
arriba
STX16--NPEPL1
arriba
RCC2--CPS1
arriba
RCC2--AC012491.1
arriba
PDCD1LG2--AP001830.2
arriba
PDCD1LG2--MMP7
arriba
AC015911.9--SLFN12L
arriba
AP001347.1--ANKRD20A11P
arriba
PDGFD--MMP20
arriba
AC244669.1--SEC22B3P
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing MTAP--CDKN2B-AS1:   0%|          | 0/39 [00:00<?, ?it/s]
Processing MTAP--CDKN2B-AS1:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]
Processing CDV3--MT-RNR2:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]   
Processing CDV3--MT-RNR2:   5%|▌         | 2/39 [00:00<00:03,  9.47it/s]
Processing B4GALT6--DSC3:   5%|▌         | 2/39 [00:00<00:03,  9.47it/s]
Processing B4GALT6--DSC3:   8%|▊         | 3/39 [00:00<00:03,  9.55it/s]
Processing TMEM65--ANXA13:   8%|▊         | 3/39 [00:00<00:03,  9.55it/s]
Processing TMEM65--ANXA13:  10%|█         | 4/39 [00:00<00:03,  9.58it/s]
Processing TMEM123--PDGFD:  10%|█         | 4/39 [00:00<00:03,  9.58it/s]
Processing TMEM123--PDGFD:  13%|█▎        | 5/39 [00:00<00:03,  9.60it/s]
Processing PDCD1LG2--DYNC2H1:  13%|█▎        | 5/39 [00:00<00:03,  9.60it/s]
Processing PDCD1LG2--DYNC2H1:  15%|█▌        | 6/39 [00:00<00:03,  9.62it/s]
Processing RPSAP52--HMGA2:  15%|█▌        | 6/39 [00:00<00:03,  9.62it/s]   
Processing RPSAP52--HMGA2:  18%|█▊        | 7/39 [00:00<00:03,  9.63it/s]
Processing CLTC--VMP1:  18%|█▊        | 7/39 [00:00<00:03,  9.63it/s]    
Processing CLTC--VMP1:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing AL033504.1--SASH1:  21%|██        | 8/39 [00:00<00:03,  9.64it/s]
Processing AL033504.1--SASH1:  23%|██▎       | 9/39 [00:00<00:03,  9.64it/s]
Processing TBC1D13--AL442224.1:  23%|██▎       | 9/39 [00:00<00:03,  9.64it/s]
Processing TBC1D13--AL442224.1:  26%|██▌       | 10/39 [00:01<00:03,  9.64it/s]
Processing BIRC3--PDGFD:  26%|██▌       | 10/39 [00:01<00:03,  9.64it/s]       
Processing BIRC3--PDGFD:  28%|██▊       | 11/39 [00:01<00:02,  9.64it/s]
Processing TMEM123--DYNC2H1:  28%|██▊       | 11/39 [00:01<00:02,  9.64it/s]
Processing TMEM123--DYNC2H1:  31%|███       | 12/39 [00:01<00:02,  9.64it/s]
Processing COL1A1--SLC45A4:  31%|███       | 12/39 [00:01<00:02,  9.64it/s] 
Processing COL1A1--SLC45A4:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing SH3BP5--AC002074.1:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing SH3BP5--AC002074.1:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing AC239859.5--AC013734.1:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing AC239859.5--AC013734.1:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing SRGAP2C--FCGR1B:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]       
Processing SRGAP2C--FCGR1B:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  41%|████      | 16/39 [00:01<00:02,  9.65it/s]
Processing TLK2P1--AC110079.1:  44%|████▎     | 17/39 [00:01<00:02,  9.65it/s]
Processing PTPRM--TTC39C:  44%|████▎     | 17/39 [00:01<00:02,  9.65it/s]     
Processing PTPRM--TTC39C:  46%|████▌     | 18/39 [00:01<00:02,  9.65it/s]
Processing TMEM123--PPP2R2C:  46%|████▌     | 18/39 [00:01<00:02,  9.65it/s]
Processing TMEM123--PPP2R2C:  49%|████▊     | 19/39 [00:01<00:02,  9.65it/s]
Processing TPTE--BAGE2:  49%|████▊     | 19/39 [00:01<00:02,  9.65it/s]     
Processing TPTE--BAGE2:  51%|█████▏    | 20/39 [00:02<00:01,  9.64it/s]
Processing TMEFF2--TEX41:  51%|█████▏    | 20/39 [00:02<00:01,  9.64it/s]
Processing TMEFF2--TEX41:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing EIF4H--COL1A2:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing EIF4H--COL1A2:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]
Processing TLK2--AC018638.8:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]
Processing TLK2--AC018638.8:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]
Processing MAP3K20--RAPGEF4:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]
Processing MAP3K20--RAPGEF4:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]
Processing TMEM123--BIRC2:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]  
Processing TMEM123--BIRC2:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing NUP214--AP000851.1:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing NUP214--AP000851.1:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing NUP214--AP000851.2:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing NUP214--AP000851.2:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]     
Processing TVP23C--CDRT4:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]
Processing AC092807.3--DDAH1:  72%|███████▏  | 28/39 [00:02<00:01,  9.65it/s]
Processing AC092807.3--DDAH1:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]
Processing UGDH--UGDH:  74%|███████▍  | 29/39 [00:03<00:01,  9.65it/s]       
Processing UGDH--UGDH:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing STX16--NPEPL1:  77%|███████▋  | 30/39 [00:03<00:00,  9.65it/s]
Processing STX16--NPEPL1:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]
Processing RCC2--CPS1:  79%|███████▉  | 31/39 [00:03<00:00,  9.65it/s]   
Processing RCC2--CPS1:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]
Processing RCC2--AC012491.1:  82%|████████▏ | 32/39 [00:03<00:00,  9.65it/s]
Processing RCC2--AC012491.1:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing PDCD1LG2--AP001830.2:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing PDCD1LG2--AP001830.2:  87%|████████▋ | 34/39 [00:03<00:00,  9.65it/s]
Processing PDCD1LG2--MMP7:  87%|████████▋ | 34/39 [00:03<00:00,  9.65it/s]      
Processing PDCD1LG2--MMP7:  90%|████████▉ | 35/39 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  90%|████████▉ | 35/39 [00:03<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  92%|█████████▏| 36/39 [00:03<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P:  92%|█████████▏| 36/39 [00:03<00:00,  9.65it/s]
Processing AP001347.1--ANKRD20A11P:  95%|█████████▍| 37/39 [00:03<00:00,  9.65it/s]
Processing PDGFD--MMP20:  95%|█████████▍| 37/39 [00:03<00:00,  9.65it/s]           
Processing PDGFD--MMP20:  97%|█████████▋| 38/39 [00:03<00:00,  9.65it/s]
Processing AC244669.1--SEC22B3P:  97%|█████████▋| 38/39 [00:03<00:00,  9.65it/s]
Processing AC244669.1--SEC22B3P: 100%|██████████| 39/39 [00:04<00:00,  9.65it/s]
Processing AC244669.1--SEC22B3P: 100%|██████████| 39/39 [00:04<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory