File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/afbe924cb302ed9475d836d115f36b/.command.log
Size
1.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_FM_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/1c9697b0943c06d598c2a7564e0a55/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/bf972a0bda5bf893c8a913a8962083/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/afbe924cb302ed9475d836d115f36b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/afbe924cb302ed9475d836d115f36b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
DHRSX--IGH@-ext
starfusion
EXOC4--EXOC4
arriba
MAST2--IPP
arriba
TVP23C--CDRT4
arriba

  0%|          | 0/4 [00:00<?, ?it/s]
Processing DHRSX--IGH@-ext:   0%|          | 0/4 [00:00<?, ?it/s]
Processing DHRSX--IGH@-ext:  25%|██▌       | 1/4 [00:00<00:00,  9.22it/s]
Processing EXOC4--EXOC4:  25%|██▌       | 1/4 [00:00<00:00,  9.22it/s]   
Processing EXOC4--EXOC4:  50%|█████     | 2/4 [00:00<00:00,  9.46it/s]
Processing MAST2--IPP:  50%|█████     | 2/4 [00:00<00:00,  9.46it/s]  
Processing MAST2--IPP:  75%|███████▌  | 3/4 [00:00<00:00,  9.54it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 3/4 [00:00<00:00,  9.54it/s]
Processing TVP23C--CDRT4: 100%|██████████| 4/4 [00:00<00:00,  9.58it/s]
Processing TVP23C--CDRT4: 100%|██████████| 4/4 [00:00<00:00,  9.53it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory